BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09830.1
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352054 jgi|Araly1|352054|fgenesh1_pg.C_scaffold_6002647 928 0.0
> Ahg352054 jgi|Araly1|352054|fgenesh1_pg.C_scaffold_6002647
Length=573
Score = 928 bits (502), Expect = 0.0
Identities = 552/576 (96%), Gaps = 3/576 (1%)
Strand=Plus/Plus
Query 100 ATGGGGAAGAAGAGAAAATCAACAGCCACAAGCCTCGATGAGGTAGATCGGACTGTTTAC 159
||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTAAGAAGAGAAAATCTACAGCGACGAGCCTCGATGAGGTAGATCGGACTGTTTAC 60
Query 160 GCTTCTTTTCGCACCGCCGCTAACTCTTTATCTCAGCTTTATACTCAGTCTATGAATCAT 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTTCTTTTCGCACCGCCGCTAACTCTTTATCTCAGCTTTATACTCAGTCTATGAATCAT 120
Query 220 CAGAAGTTATCTTTTCAAGCCGGTGAACGCCATGGTTTGGAAAAACTGTACCAATGGATA 279
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGAAACTATCTTTTCAAGCCGGTGAACGCCATGGTTTGGAAAAACTGTACCAATGGATA 180
Query 280 TGGAGACAACAAGAAGGAGGGTCAAGAGTGACACCTATGGATATTGTCAATTATATTCAG 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGAGACAACAAGAAGGAGGGTCAAGAGTGACACCTATGGATATTGTCAATTATATTCAG 240
Query 340 AACGAGCTCGAATGCTGCATAGACGAGCCTCCAATATCCCCAAGAGCGCCACCACCGCAA 399
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 241 AACGAGCTCGAATGCTGCATAGACGAGCCTCCAATATCTCCAAGAGCGCCACCAACGCAA 300
Query 400 CCAACAATGCATGTCACGAATCCCGGGCTCATGACCACTTCAGGCACCTCTTTCCCAACA 459
||||||||||||||||| ||| ||||||||||| |||||||||| || ||||||||||||
Sbjct 301 CCAACAATGCATGTCACAAATTCCGGGCTCATGGCCACTTCAGGTACTTCTTTCCCAACA 360
Query 460 GCTGTTCCAGTGGTTAGGTCCGAGCAGTGTGAGAACCAGGCCAAGAACTCGGTTTTCTCA 519
|||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 361 CCTGTTCCAGTGGTTCGGTCTGAGCAATGTGAGAACCAGGCCAAGAACTCGGTTTTTTCA 420
Query 520 AACGCACTTTCAAGCCCAATACGGCGTAGTCTTCAGAACTACCAAATTCCGCAGGGAGGC 579
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACGCACTTTCCAGCCCAATCCGGCGTAGTCTTCAGAACTACCAAATTCCGCAGGGAGGC 480
Query 580 TACACATCCGGCGGAACCACCAGAAGCAGTGAAGTGAACAGGGGATCTAACTCTCCAGGT 639
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 TACACATCTGGCGGAACCA---GAAGCAGTGAAGTGAACAGGGGATCTAACTCTCCAGGT 537
Query 640 TCTATTGATTCTTCAATGGACATGCATGCAGAATAA 675
||||||||||||||||||||||||||||||||||||
Sbjct 538 TCTATTGATTCTTCAATGGACATGCATGCAGAATAA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5