BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10030.1 Length=1535 Score E Sequences producing significant alignments: (Bits) Value Ahg489848 jgi|Araly1|489848|fgenesh2_kg.6__2982__AT4G10030.1 1288 0.0 > Ahg489848 jgi|Araly1|489848|fgenesh2_kg.6__2982__AT4G10030.1 Length=1335 Score = 1288 bits (697), Expect = 0.0 Identities = 844/912 (93%), Gaps = 21/912 (2%) Strand=Plus/Plus Query 141 GTAATGTCGGCGGTCTCGTGCTCCACGGCGAGTTCTAGCGGAGGATGTGCATTTAGGTTT 200 |||||||||||||| || |||||||||||||| |||||||| ||||||| | |||||||| Sbjct 1 GTAATGTCGGCGGTATCTTGCTCCACGGCGAGCTCTAGCGGCGGATGTGGAATTAGGTTT 60 Query 201 CGATCAAAG--A-------CAT---C---AATCCATTCTCCTAATTTCATCAGAATTGGG 245 | ||||||| | ||| | || ||||||||||||| |||||||||| ||| Sbjct 61 CAATCAAAGACATTTGCTTCATCAGCAAAAACCCATTCTCCTAATCTCATCAGAATCGGG 120 Query 246 ACAAATTCTCAGAGTGACAGATTCTGTAAT-CATCGTTTGGAATTGGTACATGGAACT-C 303 | |||||||||||||||||||||||| || ||||||||||||||||||||||||||| | Sbjct 121 CCTAATTCTCAGAGTGACAGATTCTGT-ATGCATCGTTTGGAATTGGTACATGGAACTCC 179 Query 304 GTAAAGTGAAAGGAGCATCTGTACGTATGGCATTAGTTGAGGAGAGACAATCAACGAGCA 363 | ||||| | |||| ||||| ||||||||||||| ||||| ||||||||||||||||| | Sbjct 180 G-AAAGTCAGAGGAACATCTATACGTATGGCATTGGTTGATGAGAGACAATCAACGAGTA 238 Query 364 AAGATGTTGCTGAGCCTCCTCGGGTCCTGGCGTATGATCTTGTTCAAGGAGCACTTGTGA 423 ||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||| Sbjct 239 AAGATTTTGCTGAGCCTCCTCGGATTCTGGCGTATGATCTTGTTCAAGGGGCACTTGTGA 298 Query 424 AATGGAGATGGAAGGATGACAAATCTGTTCCAGATACACCTACTGCTGTTCTCCTACACG 483 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 299 AATGGAGATGGAAGGATGACAAATCTGTTCCAGATACACCTACCGCTGTTCTCTTACACG 358 Query 484 GAATTTTAGGGAGCGGGAAAAACTGGGGCACTTTTGCTCGTAGATTGGCTCATGAATTCC 543 ||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct 359 GAATTCTAGGGAGCGGGAAAAACTGGGGCACTTTTGCCCGAAGATTGGCTCATGAGTTCC 418 Query 544 CAACGTGGCAGTTTCTATTGGTAGACCTGCGTTGCCATGGGGATTCAACATCTCTCAAGA 603 |||| ||||||||||| |||||||| || |||||||||||||||||| |||||||||||| Sbjct 419 CAACTTGGCAGTTTCTCTTGGTAGATCTTCGTTGCCATGGGGATTCAGCATCTCTCAAGA 478 Query 604 AGAGAGGTCCACACTCGGTTGCTACTACTGCTTCTGATGTTCTAAAACTTGTTGGTCAGT 663 |||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| Sbjct 479 AGAGAGGTCCACACTCTGTTGCTACAACAGCTTCTGATGTTCTAAAACTTGTTGGTCAGT 538 Query 664 TGAGGTTAACACCTCGGGTCCTTGTTGGTCATAGCTTTGGGGGGAAAGTTGTATTAAGCA 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TGAGGTTAACACCTCGGGTCCTTGTTGGTCATAGCTTTGGGGGGAAAGTTGTATTAAGCA 598 Query 724 TGGTAGAGCAAGCAGCTAAGCCTCTTCCACGACCAGTCCGAGCTTGGGTATTGGATGCTA 783 |||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 599 TGGTGGAACAAGCAGCTAAGCCTCTTCCAAGACCAGTCCGGGCTTGGGTATTGGATGCTA 658 Query 784 CTCCTGGTAAAGTTCGTGCAGGAGGAGATGGAGAAGATCATCCACGAGAGCTTATATCAT 843 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CTCCTGGAAAAGTTCGTGCAGGAGGAGATGGAGAAGATCATCCACGAGAGCTTATATCAT 718 Query 844 TTCTACGTAAATTGCCAAAAGTGGTCTTGTCAAAGCGCGAGGTTCTTAAAGCTCTTATAA 903 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TTCTACGTAAATTGCCAAAAGTGGTCTTGTCAAAGCGCGAGGTTCTTAAAGCTCTTATAA 778 Query 904 ATGAAGGGTTTTCCAATGATGTCGCACAGTGGGTCATTACCAATCTCAGACCTACTGGAC 963 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 779 ATGAAGGGTTTTCCAATGATGTCGCGCAGTGGGTCATTACCAATCTCAAACCTACTGGAC 838 Query 964 CATCAGCTTCTAGCTTCTCGTGGACATTTGACCTAGACGGGATCGCTGAACTTTACCAG- 1022 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CATCGGCTTCTAGCTTCTCGTGGACATTTGACCTAGACGGGATCGCTGAACTTTACCAAA 898 Query 1023 TCTTACGAAGAG 1034 |||| | ||||| Sbjct 899 TCTTCC-AAGAG 909 Score = 545 bits (295), Expect = 3e-154 Identities = 421/475 (89%), Gaps = 36/475 (8%) Strand=Plus/Plus Query 1059 AATCTTCCAAGAGGAGTACATGTGAATTTTCTGAAAGCGGAAAGAAGCTTGCACCGTTGG 1118 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 AATCTTCCAAGA-G-GTACATGTGAATTTTCTGAAAGCGGAAAGAAGCTTGCACCGTTGG 954 Query 1119 GCCCTAGAAGACCTTCAGCGAATCCACGCCGCTGAAGAGCTAGCCTCTGAAGAAGGCGGT 1178 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 955 GCCCTAAAAGACCTTCAGCGAATCCACGCCGCTGAAGAGCTAGCCTCTGAAGAAGGCGGT 1014 Query 1179 GGTGTAGAAATGCATGTCTTGGAAGATGCCGGTCATTGGGTTCACACGGATAACCCGGAT 1238 || ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 1015 GGCGTAGAAATGCATGTCCTGGAAGATGCCGGTCATTGGGTTCACACAGATAACCCGGAT 1074 Query 1239 GGTCTCTTCAGGATCTTGTCATCTTCTTTCCAGGTTCTCAGAGCCTAGAGGTGCTGAACG 1298 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1075 GGTCTCTTCAGGATCTTGTCATCTTCTTTCCAGGTTCTCAGAGCCTAGTGGTGCTGAACG 1134 Query 1299 GTCTTGGTTCGGCTCTTTTTCTGTGTAATACTTGTGGAGAAGTTAGGTCTAAAAACAGTT 1358 ||| || | || || | |||||||||| | | || | | ||| | Sbjct 1135 --CTT--TT----T-TTGTT-T----AATACTTGTG-ACAT-TT-G----A----CAGAT 1169 Query 1359 GACAGATACAATATCATATACATCAACACTGTGTCCGTGTAATGTTCTGTGTGACATAAG 1418 | || ||| | |||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1170 G-CA-ATA---T--CATATACATCAACATTGTGTCCGTGTAATGTTTTGTGTGACATAAG 1222 Query 1419 TAATTCAGAAGTAACATCATATGGCTGTATCATCCGGTATTATTCTTGACTCGATGTCCT 1478 ||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 1223 TAATTAAGAAGTAGCATCATATGGCTGTATCATCCGGCATTATTCTTTACTCGATGTCCT 1282 Query 1479 TTACATTGCTTTTCtttttttGTGGTTCACTTGGTCAGAGAAAGTTCTAAAGCTC 1533 ||||||||||||||||||| || |||||||| ||| |||||||||||||||||| Sbjct 1283 TTACATTGCTTTTCTTTTT--GTCGTTCACTTAGTCGGAGAAAGTTCTAAAGCTC 1335 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57478179705 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5