BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10180.1
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489866 jgi|Araly1|489866|fgenesh2_kg.6__3000__AT4G10180.1 2645 0.0
> Ahg489866 jgi|Araly1|489866|fgenesh2_kg.6__3000__AT4G10180.1
Length=1768
Score = 2645 bits (1432), Expect = 0.0
Identities = 1670/1782 (94%), Gaps = 28/1782 (2%)
Strand=Plus/Plus
Query 3 CTCACATCGTCTCCTCCATTTTCACCACTAAAACCAGACCAAAAACCTTCCTTTATTCGT 62
||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 1 CTCCCATCGTCTCCTCCATTTTCACCACTAAAACCAGAACACAAACCTTCCTTTATT-GT 59
Query 63 GCCCTTCTGGGCCAACAAATGTTCACAAGCGGTAACGTCACCGCTCGGGTCTTCGAACGT 122
|||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 60 GCCCTTTTGGGCCAACAAATGTTCACAAGCGGTAACGTCACCGCTAGGGTTTTCGAACGT 119
Query 123 CAGATTCGAACTCCTCCTCCCGGCGCTTCCGTAAATCGTGCAAGACACTTCTACGAAAAC 182
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 CAGATTCGTACTCCTCCTCCCGGCGCTTCCGTAAATCGCGCAAGACACTTCTACGAAAAC 179
Query 183 CTAGTCCCAAGCTACACACTCTACGATGTCGAATCTCCCGATCACTGTTTCCGCAAATTC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTAGTCCCAAGCTACACACTCTACGATGTCGAATCTCCCGATCACTGTTTCCGCAAATTC 239
Query 243 ACAGAAGACGGACTCTTCCTCATTAGTTTCAGCCGTAACCATCAAGAACTCATAGTCTAT 302
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 ACAGAAGACGGACTCTTCCTCATTAGTTTCAGCCGTAACCACCAAGAACTCATAGTCTAT 299
Query 303 CGTCCTTCTTGGCTCACTTACTCCACAA---CCGATGATTCCACAACCACCCTACCTCCT 359
||||||||||||||||| || || |||| ||||||| | | | || | |||||
Sbjct 300 CGTCCTTCTTGGCTCACATATTCAACAACCTCCGATGA-T-GATGA--TTCC-A-CTCCT 353
Query 360 CTACCTCGCCGTGCTTCGAAATTCGACAGCTTTTTCACTCAACTCTACTCAGTCAATCTC 419
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 354 CTACCTCGCCGTGCTTCGAAATTCGATAGCTTCTTCACTCAACTCTACTCAGTCAATCTT 413
Query 420 GCTTCTTCTAACGAACTCATCTGCAAAGACTTCTTCCTCTATCACCAAACTCGTCGTTTC 479
||||| || |||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 414 GCTTCATCGAACGAACTTATCTGCAAAGACTTCTTCCTCTACCACAAAACTCGTCGTTTC 473
Query 480 GGTCTTTTCGCTACTTCAACAGCTCAGATCCATGATTCATCATCTCCTTCTAATGACGCT 539
||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 474 GGTCTTTTCGCTACTTCAACAGCTCAGATCCATGA-T--TCATCTCCTACTAATGACGCG 530
Query 540 GTTCCTGGTGTTCCTTCCATTGATAAGATTACTTTCGTACTTCTTCGATTAGATGATGGT 599
|||||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||
Sbjct 531 GTTCCTGGTGTTCCATCGATTGATAAGATCACTTTCCTACTTCTTCGATTAGATGATGGT 590
Query 600 GTTGTTCTTGATGAGAGGGTTTTTCTTCATGATTTCGTTAATCTGGCTCATAATATGGGT 659
| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 591 GATGTTCTTGATGAGAGGGTTTTTCTTCATGATTTCGTCAATTTGGCTCATAATATGGGT 650
Query 660 GTGTTTCTTTATGATGATCTTTTAGCGATTTTGTCGTTGCGTTATCAGAGGATTCATCTT 719
|||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 651 GTGTTTCTCTATGATGATCTTTTAGCGATTCTATCGTTGCGTTATCAGAGGATTCATCTT 710
Query 720 CTTCAGATTAGAGATTCTGGTCATCTTGTTGATGCTCGTGCTATTGGTTACTTTTGTCGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CTTCAGATTAGAGATTCTGGTCATCTTGTTGATGCTCGTGCTATTGGTTACTTTTGTCGT 770
Query 780 GAAGATGATGAGCTTTTCCTCAATTCTAGCTCTCAGGCAATGATGAGTCAAGATAAGAGT 839
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 771 GAAGATGATGAGCTTTTCCTCAATTCGAGTTCTCAGGCAATGATGAGTCAAGATAAGAAC 830
Query 840 AAACAGCAGAGTTTATCTGGGAGTAAGGA--A-GATGATACTG-GAGAGAATGGGTTGCG 895
|||||||| |||||||| |||| |||||| | |||||| || | |||||||||||||
Sbjct 831 AAACAGCAAAGTTTATCGGGGAATAAGGATGACGATGATGTTGCG-GAGAATGGGTTGCA 889
Query 896 TCATAGTCTAAG--TCAGCC-AAGTGGTTCGAATTCGTTTCTTAGTGGTGTTAAGCAACG 952
| ||||| | | |||||| || || | |||||||||||||||||||| ||||||||||
Sbjct 890 TTGTAGTC-A-GCCTCAGCCGAA-TGCTACGAATTCGTTTCTTAGTGGTATTAAGCAACG 946
Query 953 GTTACTTTCTTTTATCTTCAGGGAGATTTGGAATGAAGAATCAGATAACGTAATGAGAGT 1012
||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||
Sbjct 947 ATTACTTTCTTTTATCTTCAGGGAGATTTGGAATGAAGAATCGGATAATGTACTGAGGGT 1006
Query 1013 TCAAAGTCTTAAGAAGAAGTTTTATTTCCATTTCCAGGATTATGTCGACTTGATTATATG 1072
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1007 TCAAAGTCTTAAGAAGAAGTTCTATTTCCATTTCCAGGATTATGTCGACTTGATTATTTG 1066
Query 1073 GAAGGTTCAGTTTTTGGATCGACAACACCTGCTAATCAAATTTGGAAGTGTAGACGGTGG 1132
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 1067 GAAGGTTCAGTTTTTGGATCGACAACACCTGCTACTCAAATTTGGCAGTGTAGATGGTGG 1126
Query 1133 GGTAACAAGAAGTGCTGATCATCATCCAGCTTTCTTCGCGGTGTATAATATGGAGACTAC 1192
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1127 GGTAACAAGAAGTGCTGATCATCATCCAGCTTTCTTTGCGGTGTATAATATGGAGACAAC 1186
Query 1193 TGACATTGTAGCATTCTATCAGAACTCAGCAGAAGATCTTTACCAATTATTTGAGCAGTT 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 TGACATTGTAGCATTCTATCAGAACTCAGCAGAAGATCTTTACCAATTATTTGAGCAGTT 1246
Query 1253 CAGTGATCACTTTACAGTATCAAGTAGTACACCGTTCATGAACTTTGTAACATCGCATTC 1312
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1247 CAGTGATCACTTTACCGTATCAAGTAGTACACCATTCATGAACTTTGTAACATCGCATTC 1306
Query 1313 TAACAACGTCTATGCCCTTGAACAACTAAAATACACGAAGAACAAATCAAACAGTTTTTC 1372
||||| |||| |||| || ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1307 TAACAGCGTCCATGCTCTGGAACAACTAAAGTACATGAAGAACAAATCAAACAGTTTTTC 1366
Query 1373 TCAGTTTGTGAAGAAGATGTTACTCTCTTTGCCTTTCAGTTGTCAGTCACAAAGTCCCTC 1432
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1367 TCAGTTTGTGAAGAAGATGTTGCTCTCTTTACCTTTCAGTTGTCAGTCACAAAGTCCCTC 1426
Query 1433 CCCATATTTCGACCAGTCTCTCTTCCGGTTCGATGAAAAGTTAATATCCGCAGCAGATAG 1492
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1427 CCCATATTTCGACCAATCTCTCTTCCGGTTCGATGAAAAGTTAATTTCCGCAGCAGATAG 1486
Query 1493 GCATAGGCAATCCTCAGACAACCCAATCAAGTTCATATCTCGAAGGCAACCGCAAACCCT 1552
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1487 GCATAGGCAATCCTCAGACAATCCAATCAAGTTCATATCTCGAAGGCAACCGCAAACGCT 1546
Query 1553 GAAATTCAAGATAAAACCAGGACCAGAGTGTGGAACTGCAGATGGTCGAAGCAAGAAGAT 1612
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1547 GAAATTCAAGATAAAACCAGGACCAGAGTGTGGAACTGCAGATGGTCGGAGCAAGAAGAT 1606
Query 1613 ATGTTCATTCTTGTTCCATCCTCATTTACCACTTGCCATCTCTATTCAACAAACACTTTT 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 ATGTTCATTCTTGTTCCATCCTCATTTACCACTTGCCATCTCTATTCAACAAACACTTTT 1666
Query 1673 CATGCCACCTTCTGTCGTCAATATCCATTTTAGGCGATGAC-TCTTTTTGGTTTCTATCA 1731
|||||| |||||||||||||||||||||||| ||||||||| |||| | |||| | ||||
Sbjct 1667 CATGCCGCCTTCTGTCGTCAATATCCATTTTCGGCGATGACCTCTTGTGGGTTCC-ATCA 1725
Query 1732 GTCTAGTAGTCT-TCCTACATGTTGTAATCTATTGTTTGTAA 1772
|||||||||||| || ||||||||||||||||||||||||||
Sbjct 1726 GTCTAGTAGTCTGTC-TACATGTTGTAATCTATTGTTTGTAA 1766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69171884920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5