BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10250.1 Length=949 Score E Sequences producing significant alignments: (Bits) Value Ahg489869 jgi|Araly1|489869|fgenesh2_kg.6__3003__AT4G10250.1 1013 0.0 > Ahg489869 jgi|Araly1|489869|fgenesh2_kg.6__3003__AT4G10250.1 Length=827 Score = 1013 bits (548), Expect = 0.0 Identities = 601/627 (96%), Gaps = 2/627 (0%) Strand=Plus/Plus Query 155 TTTGGTTTCAACCTTCTACAA-TAAATCCAAATCACTAACCATGATGAAGCACTTGCTAA 213 ||||||||||||||||| ||| |||| |||| ||||||||||||||||||| ||||||| Sbjct 106 TTTGGTTTCAACCTTCTTCAAGAAAAT-CAAACCACTAACCATGATGAAGCATTTGCTAA 164 Query 214 GCATCTTCTTCATAGGAGCTTTGTTGCTTGGAAACATCAAAACAAGTGAAGGGTCTTTGT 273 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 165 GCATCTTCTTCATAGGAGCTTTGTTACTTGGAAACATCAAAACAAGTGAAGGATCTTTGT 224 Query 274 CTTCTGCACTTGAAACTACTCCAGGCAGCTTGCTATCCGATCTCTGGCTAGACCGGTTCC 333 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 225 CTTCTGCACTTGAAACTACTCCAGGCAGCTTGCTATCTGATCTCTGGCTAGACCGGTTCC 284 Query 334 CTGATCCATTCAAGATCTTGGAGAGAATCCCATTAGGACTCGAGAGGGACACAAGCGTGG 393 |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| Sbjct 285 CTGATCCATTCAAGATCTTGGAGAGAATCCCATTAGAACTCGAGAGGGACACGAGTGTGG 344 Query 394 CTCTGTCTCCAGCAAGAGTAGACTGGAAAGAAACAGCAGAAGGGCATGAGATAATGCTCG 453 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 CTCTGTCTCCAGCGAGAGTAGACTGGAAAGAAACAGCAGAAGGGCATGAGATAATGCTCG 404 Query 454 ATATCCCCGGTTTGAAGAAGGATGAAGTAaagatagaagtggaggagaacggagttttac 513 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 405 ATATCCCCGGTTTAAAGAAGGATGAAGTAAAGATAGAAGTGGAGGAGAACCGAGTTTTGC 464 Query 514 gagtcagtggagagaggaaaagagaagaagagaagaaaggagatcaatggcatagagtgg 573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 GAGTCAGTGGAGAGAGGAAAAGAGAAGAAGAGAAGAAAGGAGATCAATGGCATAGAGTGG 524 Query 574 agagaTCATATGGAAAATTCTGGAGACAGTTCAAGCTACCTGATAATGTAGATATGGAAT 633 |||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| Sbjct 525 AGAGATCATATGGAAAGTTCTGGAGACAGTTCAAGCTACCTGATAATGTGGATACGGAAT 584 Query 634 CAGTCAAGGCCAAGCTTGAGAATGGTGTGCTCACTATTAACCTCACGAAACTATCTCCTG 693 |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| Sbjct 585 CAGTCAAGGCCAAGCTAGAGAATGGTGTGCTTACTATTAACCTCACAAAACTATCTCCTG 644 Query 694 AAAAAGTTAAGGGTCCAAGAGTTGTTAACATTGCAGCTGAAGAAGACCAAACTGCAAAAA 753 |||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 645 AAAAGGTCAAGGGTCCAAGGGTTGTTAACATTGCAGCTGAAGAAGACCAAACTGCAAAAA 704 Query 754 TCAGCTCTTCTGAATCCAAAGAACTCT 780 ||||||||||||||||||| ||||||| Sbjct 705 TCAGCTCTTCTGAATCCAAGGAACTCT 731 Score = 137 bits (74), Expect = 1e-31 Identities = 100/111 (90%), Gaps = 7/111 (6%) Strand=Plus/Plus Query 14 TCTCTGCAAAACTCTACCAAAAGAAAGATATTTCAAGAAACTTCTTCATTCTTCATACAA 73 |||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| Sbjct 2 TCTCTGCAAAACTCTAGC---A-AAAGATATTTCAAGAAACTTCTTCATTCTTCATACAA 57 Query 74 TGTGTATTATATATACACCAGAGAATTGAGACTAACCATCATAGAAAACAA 124 ||||||| ||||| |||||||||||||||||| | | ||||||||||||| Sbjct 58 TGTGTAT-ATATA--CACCAGAGAATTGAGACTTATCTTCATAGAAAACAA 105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35225575308 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5