BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10270.1 Length=477 Score E Sequences producing significant alignments: (Bits) Value Ahg895156 jgi|Araly1|895156|Al_scaffold_0006_3152 396 9e-110 Ahg922431 jgi|Araly1|922431|scaffold_103712.1 141 4e-33 > Ahg895156 jgi|Araly1|895156|Al_scaffold_0006_3152 Length=270 Score = 396 bits (214), Expect = 9e-110 Identities = 254/273 (93%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 72 ATGAGTTCTACAAGCAAAGCATGGACAGTGGCAGTGAGCATCGGAGCCGTAGAGGCATTA 131 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1 ATGAGTTCTACAAGCAAAGCATGGACGGTGGCAGTGAGCATCGGAGCTGTAGAGGCATTA 60 Query 132 AAAGACCAACTAGGTCTTTGTCGGTGGAACTACATACTCCGGTCGGTTAATCAACATCTC 191 ||||||||| ||||||||||| |||||||||||||||||||||| || ||||||||||| Sbjct 61 AAAGACCAATTAGGTCTTTGTAGGTGGAACTACATACTCCGGTCAGTGAATCAACATCTA 120 Query 192 CGGAACAACGTTAGATCTGTTTCTCAAGGGAAAAGGTTCTCTTCGTCTTCTGTCTCCGCA 251 ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 121 CGGAACAACGTCAGATCTGTTTCTCAAGGGAAAAGGTTTTCTTCG---TCTGTCTCCGCC 177 Query 252 GCCGTTACCTCCTCTGGTGAGAGCGAGAAGGCTAAGAAGGCTGAAGAATCTCTTAGAACA 311 || ||||||||||| |||||||| |||||||| || |||||||||||||| ||||||||| Sbjct 178 GCGGTTACCTCCTCCGGTGAGAGTGAGAAGGCGAAAAAGGCTGAAGAATCGCTTAGAACA 237 Query 312 GTCATGTACTTGAGCTGTTGGGGTCCTAATTAA 344 ||||||||||||||||||||||||||||||||| Sbjct 238 GTCATGTACTTGAGCTGTTGGGGTCCTAATTAA 270 > Ahg922431 jgi|Araly1|922431|scaffold_103712.1 Length=324 Score = 141 bits (76), Expect = 4e-33 Identities = 214/278 (77%), Gaps = 19/278 (7%) Strand=Plus/Plus Query 68 AAAGATGAGTTCTACAAGCAAAGCATGGACAGTGGCAGTGAGCATCGGAGCCGTAGAGGC 127 |||||||||||| ||||||||||||||| ||| || | |||||||||||||| || || Sbjct 17 AAAGATGAGTTCAACAAGCAAAGCATGGTTAGTAGCTGCAAGCATCGGAGCCGTTGAAGC 76 Query 128 ATTAAAAGACCAACTAGGTC-TTTGTCGGTGGAACTACAT-ACTCCGGTCGGTTAATCAA 185 | || |||||| |||| | | ||||| ||||||||| | | |||| || || |||||| Sbjct 77 GTCCAAGGACCAATTAGG-CATGTGTCGCTGGAACTACTTGA-TCCGATCAGTGAATCAA 134 Query 186 CATCTCCGGAACAACGTTAGATCTGTTTCTCAAGG-GAAAAGGTTCTCTTCGTCTTCTGT 244 | | |||| |||||||| ||||| | ||||| ||| || || |||||||| || | || Sbjct 135 CGTATCCGTAACAACGTGAGATCCGCTTCTC-AGGCCAACAGATTCTCTTCTTCAACCGT 193 Query 245 C-TCCGCAG-CCGTTACCTCCTCTGGTGAGAGCGAGAAGGCTAAGAAGGCTGAAGAATCT 302 | | ||| | |||||| | | | | | | ||||| ||| ||||||| || || Sbjct 194 CGT-CGC-GTCCGTTA--AGGAC-GAT-A-A-C---AAGGCAAAGCAGGCTGAGGAGTCA 242 Query 303 CTTAGAACAGTCATGTACTTGAGCTGTTGGGGTCCTAA 340 ||||| || ||||||||||||||||||||||||||||| Sbjct 243 CTTAGGACGGTCATGTACTTGAGCTGTTGGGGTCCTAA 280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17284481817 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5