BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10380.1 Length=1521 Score E Sequences producing significant alignments: (Bits) Value Ahg942850 jgi|Araly1|942850|scaffold_603394.1 1500 0.0 > Ahg942850 jgi|Araly1|942850|scaffold_603394.1 Length=955 Score = 1500 bits (812), Expect = 0.0 Identities = 906/953 (95%), Gaps = 0/953 (0%) Strand=Plus/Plus Query 295 aaaaaaaaaaCGTTGGAAATGGCTCCACCGGAGGCTGAGGTGGGTGCGGTAATGGTGATG 354 |||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 3 AAAAAATAAACGTTGGAAATGGCTCCACCGGAGGCTGAGGTGGGTTCGGTTGTGGTGATG 62 Query 355 GCTCCTCCAACGCCGGGGACACCGGGAACACCGGGAGGACCGTTGATCACGGGGATGAGA 414 |||||||| || ||||| || ||||||||||||||||| |||||||||||||| |||||| Sbjct 63 GCTCCTCCTACCCCGGGAACGCCGGGAACACCGGGAGGGCCGTTGATCACGGGAATGAGA 122 Query 415 GTGGATTCAATGTCGTTTGATCATCGGAAACCAACGCCTCGATGCAAATGCTTGCCGGTG 474 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GTGGATTCAATGTCATTCGATCATCGGAAACCAACGCCTCGATGCAAATGCTTGCCGGTG 182 Query 475 ATGGGATCAACTTGGGGTCAACATGACACATGCTTCACCGATTTTCCCTCTCCTGATGTC 534 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 183 ATGGGATCAACTTGGGGTCAACATGACACATGTTTCACCGATTTTCCCTCTCCTGATGTC 242 Query 535 TCCCTCACTCGCAAGCTTGGAGCCGAGTTCGTGGGAACATTCATCTTGATATTCACCGCG 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 TCCCTCACTCGCAAGCTTGGAGCCGAGTTCGTGGGAACATTCATCTTGATATTCACCGCG 302 Query 595 ACAGCCGGTCCAATCGTGAACCAGAAATACGATGGAGCAGAAACCCTAATCGGTAACGCT 654 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 303 ACAGCCGGTCCAATCGTGAACCAGAAATACGACGGAGCAGAAACCCTAATCGGTAACGCG 362 Query 655 GCATGCGCAGGACTCGCAGTGATGATCATAATACTCTCAACAGGTCATATCTCAGGGGCT 714 ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| Sbjct 363 GCATGCGCAGGACTCGCAGTGATGATCATAATACTATCAACGGGTCACATCTCAGGGGCT 422 Query 715 CACCTAAACCCATCACTGACCATAGCATTCGCTGCTCTAAGGCACTTCCCTTGGGCACAC 774 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 423 CATCTAAACCCATCACTGACCATAGCATTCGCAGCTCTAAGGCACTTCCCTTGGGCTCAC 482 Query 775 GTCCCTGCTTACATAGCGGCTCAAGTCTCAGCTTCCATTTGCGCTTCATTCGCACTTAAA 834 || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| Sbjct 483 GTGCCTGCTTACATTGCAGCTCAAGTCTCAGCTTCCATTTGTGCTTCATTCGCACTTAAA 542 Query 835 GGAGTGTTCCATCCTTTTATGTCCGGTGGTGTCACTATTCCATCTGTTAGCCTTGGACAA 894 |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| Sbjct 543 GGAGTGTTCCATCCTTTTATGTCCGGAGGTGTCACTGTTCCATCTGTTAGCCTCGGACAA 602 Query 895 GCCTTTGCTCTTGAGTTCATCATCACTTTCATTCTCCTCTTTGTTGTAACTGCCGTCGCT 954 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 603 GCCTTTGCTCTTGAGTTCATCATCACTTTCATTCTCCTCTTTGTCGTCACTGCCGTCGCC 662 Query 955 ACCGACACTCGTGCCGTTGGAGAATTGGCAGGTATAGCCGTTGGAGCCACGGTCATGCTC 1014 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 663 ACCGACACTCGTGCCGTTGGAGAATTAGCAGGTATAGCTGTTGGAGCCACGGTCATGCTC 722 Query 1015 AATATTCTAGTCGCAGGGCCATCGACTGGTGGATCTATGAATCCTGTGAGAACTCTAGGA 1074 || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 723 AACATTCTAGTCGCAGGGCCATCGACTGGTGGATCTATGAATCCCGTGAGGACTCTAGGA 782 Query 1075 CCAGCCGTTGCATCAGGAAACTATAGGTCACTATGGGTGTATCTGGTGGCTCCTACACTT 1134 ||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||| Sbjct 783 CCAGCCGTTGCATCAGGAAACTATAGGGCAGTTTGGGTTTATCTGGTGGCTCCTACACTT 842 Query 1135 GGTGCCATATCTGGTGCAGCGGTCTACACAGGTGTTAAGCTTAACGATAGCGTGACTGAC 1194 ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||| ||| ||| Sbjct 843 GGTGCAATATCCGGTGCAGCCGTCTACACAGGTGTTAAACTTAACGATAGCGAGACCGAC 902 Query 1195 CCGCCTCGTCCGGTTAGGAGCTTTCGTCGTTAAGTGAGTGAGAGACTTGTTTA 1247 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 903 CCGCCTCGTCAGGTTAGGAGCTTTCGTCGTTAAGTGAGTGAGAGACTTGTTTA 955 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56944916275 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5