BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10610.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489908 jgi|Araly1|489908|fgenesh2_kg.6__3042__AT4G10610.1 2220 0.0
Ahg473465 jgi|Araly1|473465|fgenesh2_kg.1__3419__AT1G32790.2 553 2e-156
> Ahg489908 jgi|Araly1|489908|fgenesh2_kg.6__3042__AT4G10610.1
Length=1416
Score = 2220 bits (1202), Expect = 0.0
Identities = 1349/1419 (95%), Gaps = 14/1419 (1%)
Strand=Plus/Plus
Query 11 TTCATTGTATTCCTCAAATCTCTTTACTTGATCGTTGGTTCTCTCAAAAATCAGATTTTT 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCATTGTATTCCTCAAATCTCTTTACTTGATCGTTGGTTCTCTCAAAAATCAGATTTTT 60
Query 71 ATTTCTGGGTTTTGTTCGA--TTTTGTGATCATGGCGGTCATTGAGAGCGTCGGAGCTAA 128
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 61 ATTTCTGGGTTTTGTTCGAAATTTTCTGATCATGGCGGTCATTGAGAGCGTCGGAGCTAA 120
Query 129 TACTACTGTGGAAGCTGGTGGTTTGATCTCGCCGTCGCCGCCGTCTTCCGTCACCAGTCA 188
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACTACGGTGGAAGCTGGTGGTTTGATCTCGCCGTCGCCGCCGTCTTCCGTCACCAGTCA 180
Query 189 AGAATCAGGAG-CTTCTTCTAACAACGATCACGGTGGAAATGGAATCCATGATGAGATCG 247
||||||||||| || ||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 181 AGAATCAGGAGTCT-CTTCTAACAACGATCACGGTGGAAATGAAATCCACGGTGAGATCG 239
Query 248 GAGTCCACGTGGCGAGATCCGACGGTGGTGAGAGTTTTAAGCGTGATATGAGAGAGCTTC 307
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 GAGTCCACGTGGCGAGATCCGACGGTGATGAGAGTTTTAAGCGTGATATGAGAGAGCTTC 299
Query 308 ACGAGCTCTTGTCTAAGCTTAATCCTATGGCTAAAGAGTTTATTCCTCCTTCACTTACTA 367
| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||
Sbjct 300 ATGAGCTCTTGTCTAAGCTTAATCCCATGGCTAAAGAGTTTGTTCCTCCTTCACTCACTA 359
Query 368 AGCCAGTTGTTAATGGTTTTAACGGCGGTTTCTTCGCCGTTAATAATGGCTTTGTTGCTG 427
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 360 AGCCAGTTGTTAATGGTTTTAACGGTGGTTTCTTCGCCGTTAATAATGGCTTTGGTGCTG 419
Query 428 CCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGAAGAAGTCGTTCGGACAAC 487
|||||||||||||||| |||||||||||| | ||||| || |||||||||||||||||||
Sbjct 420 CCGGAAATTTCCCCGTTAACGAAGACGGTGGTTTTCGCCGTAAGAAGTCGTTCGGACAAC 479
Query 488 AAGGGAAACGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATAAGAA 547
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 AAGGGAAAAGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATTCGAA 539
Query 548 GAACTGTCTATGTGTCTGATATTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAACTGTCTATGTGTCTGATATTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGT 599
Query 608 TTATCGGCTTTGGACAGGTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTA 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTATCGGCTTTGGACAGGTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTA 659
Query 668 GGTTTGCTTTCATCGAGTTCACTGATGAAGTGGGTGCAAGGACTGCTCTGAATTTGTCTG 727
||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 660 GGTTTGCTTTCATTGAGTTCACTGATGAAGTGGGTGCAAGGGCTGCGCTGAGTTTGTCTG 719
Query 728 GGACGATGCTTGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGG 787
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGACGATGCTGGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGG 779
Query 788 TTAACCCAACCTTCTTGCCAAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCT 847
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 TTAACCCGACATTCTTGCCAAGGACTGAAGATGAGCGTGAGATGTGTGCGAGAACTATCT 839
Query 848 ACTGCACTAACATTGACAAGAAGCTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTG 907
||||||||||||| |||||||||||||||||| | ||||| |||||||| ||||||||||
Sbjct 840 ACTGCACTAACATCGACAAGAAGCTCACTCAAGCAGACATAAAACTCTTTTTTGAGTCTG 899
Query 908 TGTGTGGCGAGGTGTACCGTCTGAGGCTACTGGGCGATTATCATCATCCAACTCGCATCG 967
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 900 TGTGTGGAGAGGTGTACCGTCTGAGGCTGCTCGGCGATTATCATCATCCAACTCGCATTG 959
Query 968 GCTTCGTGGAGTTTGTCATGGCTGAAAGCGCGATAGCGGCTCTCAACTGCAGTGGTGTCC 1027
| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 960 GTTTTGTGGAGTTTGTCATGGCTGAAAGTGCGATAGCTGCTCTGAACTGCAGTGGCGTCC 1019
Query 1028 TTCTTGGTTCTTTACCGATAAGGGTGAGTCCATCAAAGACACCGGTTCGTTCCCGTGCTA 1087
||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1020 TTCTTGGCTCTTTACCGATAAGGGTGAGTCCGTCAAAGACACCTGTTCGTTCCCGTGCTG 1079
Query 1088 TCCCGCGACATCAAATGCATTAACCGTAG---CTACAAGTTTTATATATATTTCTGCTCC 1144
|||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1080 TCCCGCGACAACAAATGCATTAACCGTAGTAGCTACAAGTTTTATAAATATTTCTGCTCC 1139
Query 1145 TCACAGACATGTAAAGAATGTTTGTCTGAAACTTCTGGTTCTTCTGTTTTCCCGTATGTA 1204
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1140 TCACAGACATGTAAAGAATGTTTGTCTGAAACTTCTGGTTCTTTTGTTTTCCCTTATGTA 1199
Query 1205 ATGCTAGAAGCTTGATGATGCTTCTGTTGCCTTTTGCTTTTGGGTAAATCTCTTAGGGAG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATGCTAGAAGCTTGATGATGCTTCTGTTGCCTTTTGCTTTTGGGTAAATCTCTTAGGGAG 1259
Query 1265 AG-TTTTTTCGATTTGGGTTCCTACGTTTAGTAGTTTACACAGAGCAGAAGAGTA-AAAC 1322
|| |||||||||||||||||| ||||||||| |||| |||||||||||||||||| |||
Sbjct 1260 AGGTTTTTTCGATTTGGGTTCTTACGTTTAGAAGTT-ACACAGAGCAGAAGAGTATAAAA 1318
Query 1323 -ACTGAGAGAGGCTTTTGAAGATTGTCTCTGTTTTTTAGTTATTTATACTCT-T-ACCCC 1379
||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct 1319 GACTGAGAGAGGCTTTTGAAGATTGTCTCTGTTTTT-AGTTATTTATACTCTCTTACCCC 1377
Query 1380 TGAAGTTATTAGAAACTTGCTTTGGTGCTTAAAAGTTTC 1418
||||||||||||||||||||||| ||||||||| |||||
Sbjct 1378 TGAAGTTATTAGAAACTTGCTTTTGTGCTTAAATGTTTC 1416
> Ahg473465 jgi|Araly1|473465|fgenesh2_kg.1__3419__AT1G32790.2
Length=1688
Score = 553 bits (299), Expect = 2e-156
Identities = 573/702 (82%), Gaps = 32/702 (5%)
Strand=Plus/Plus
Query 448 GAAGACGGTAGCTTTCGTCGGAAGAAGTCG-TTCGGACAACAAGGGAAACGGAGAATGAA 506
||| ||||| | ||||||||||||||| | || || ||||||||||| || |||||
Sbjct 643 GAAAACGGTGGTTTTCGTCGGAAGAAG-AGCTTTGG---TCAAGGGAAACGAAGGATGAA 698
Query 507 TCCTAGGACAAGTTTGGCTCAGCGTGAAGA-GATCATAAGAAGAACTGTCTATGTGTCTG 565
| || | ||||| ||||||| || ||||| | | || | ||||| |||||||| ||||
Sbjct 699 TGCTCGAACAAGCATGGCTCAACGAGAAGATG-TTATCCGTAGAACCGTCTATGTCTCTG 757
Query 566 ATATTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCG-GCTTTGGACAG 624
|| | || |||||||||||||| ||||||||||||||||||||| | | ||| |||||||
Sbjct 758 ATCTCGATCAACAGGTCACTGAAGAGCAGCTTGCTGGTTTGTTTGT-GAGCTGTGGACAG 816
Query 625 GTTGTTGACTGTCGTATATGTGGTGATCCC-AACTCAGTACTTAGGTTTGCTTTCATCGA 683
|||||||||||||| ||||||||||| ||| |||||||| ||| ||||||| ||||| ||
Sbjct 817 GTTGTTGACTGTCGCATATGTGGTGA-CCCAAACTCAGTGCTTCGGTTTGCATTCATTGA 875
Query 684 GTTCACTGATGAAGTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTT-GGAT 742
|||||||||||||| |||||||| ||||||||||||||| || ||||| ||| || ||||
Sbjct 876 GTTCACTGATGAAGAGGGTGCAATGACTGCTCTGAATTTATCGGGGACTATG-TTGGGAT 934
Query 743 TCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCAACCTTCT 802
| ||||||||||| ||| |||| || || |||||||| |||||||||||||| || || |
Sbjct 935 TTTATCCTGTGAAAGTTCTGCCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTT 994
Query 803 TGCCAAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTG 862
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 995 TGCCCAGGACTGAAGATGAGCGTGAGATGTGTGCGAGAACTATCTACTGTACTAACATTG 1054
Query 863 ACAAGAAGCTCACTCAAACCGACATTAA-ACTCTTCTTTGAGTC-TGTGTGTGGCGAGGT 920
|||||||| | |||||| | || | || | ||||||| || || | | || || |||||
Sbjct 1055 ACAAGAAGGTGACTCAATCAGATGTGAAGA-TCTTCTTCGAATCCT-TCTGCGGAGAGGT 1112
Query 921 GTACCGTCTGAGGCTACTGGGCGATTATCATCA-TCCAACTCGCATCGGCTTC-GTGGAG 978
|| || |||||||| || || ||||| || || || | |||| || | ||| || |||
Sbjct 1113 TTATCGCCTGAGGCTTCTTGGAGATTACCAACACTCGA-CTCGAATTG-CTTTTGTAGAG 1170
Query 979 TTTGTCATGGCTGAAAGCGCGATAGCGGCTCTCAACTGCAGTGGTGTCCTTCTTGGTTCT 1038
|| || ||||| ||||| || |||||||||||||||||||| || || |||||||||||
Sbjct 1171 TTCGTAATGGCAGAAAGTGCAATAGCGGCTCTCAACTGCAGCGGAGTTGTTCTTGGTTCT 1230
Query 1039 TTACCGATAAGG---G-TGAGTCCATCAAAGACACCGGTTCGTTCCCGTGCTATC-CCGC 1093
||||| |||||| | ||||||| |||||||| || |||||| || | | ||| |||
Sbjct 1231 TTACCAATAAGGTCAGGTGAGTCCTTCAAAGACGCCTGTTCGT-CC-GAG--ATCACCGA 1286
Query 1094 GACATCAAATGCATTAACCGTAGCT-ACAAGTTTT-ATATAT 1133
| |||| |||||||| | | ||||| ||| ||||| | ||||
Sbjct 1287 GGCATCCAATGCATTGATCTTAGCTTACAGGTTTTCACATAT 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5