BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10695.1 Length=705 Score E Sequences producing significant alignments: (Bits) Value Ahg489914 jgi|Araly1|489914|fgenesh2_kg.6__3048__AT4G10695.1 833 0.0 Ahg489854 jgi|Araly1|489854|fgenesh2_kg.6__2988__AT4G10660.1 761 0.0 Ahg942886 jgi|Araly1|942886|scaffold_603430.1 302 3e-81 Ahg895453 jgi|Araly1|895453|Al_scaffold_0006_3449 60.2 2e-08 > Ahg489914 jgi|Araly1|489914|fgenesh2_kg.6__3048__AT4G10695.1 Length=613 Score = 833 bits (451), Expect = 0.0 Identities = 565/619 (91%), Gaps = 12/619 (2%) Strand=Plus/Plus Query 1 ATGTCTTATCTTGGT-TTAAAAGATAACATTCGTGCATCCGCGGTCTGCCGA-GCATGGC 58 |||||||||| | || ||| ||||||||||||||| || || ||||| | | ||||||| Sbjct 1 ATGTCTTATC-TCGTCCTAAGAGATAACATTCGTGCGTCGGCTGTCTG-CAAGGCATGGC 58 Query 59 GTAAAGCCGCTGAATCAGTTCGGGTTGTGGAGAAGCATCCATGGGTTATCAGCTTTCCG- 117 ||||||| |||||||| |||||||||||||| |||||||| |||||||||| ||||||| Sbjct 59 GTAAAGCGGCTGAATCTGTTCGGGTTGTGGAAAAGCATCCGTGGGTTATCACCTTTCCGA 118 Query 118 AGACATTACGGCGTGACTATTCTCTTCGATCCATTGGGAAGGAAGAGTTACACACTGAAT 177 || ||| ||||| ||||||||||||||||||| |||| ||||||||| |||||||||||| Sbjct 119 AG-CATGACGGCTTGACTATTCTCTTCGATCCTTTGGAAAGGAAGAGGTACACACTGAAT 177 Query 178 TTACCCGAGTTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTT-ATGCG 236 ||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 178 TTACCCGAGTTAGCTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTG-TTGATGCG 236 Query 237 AAGATCCAGTTTAGTGGACATGTTCTTCCTCAACCCGTATACTAGGGAGCTTATAAACTT 296 ||||||| |||||||||||||||||||| ||||||| |||||| | |||||||||||||| Sbjct 237 AAGATCCGGTTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAACTT 296 Query 297 GCCAAAGTGTGAGTTGTCCTTTCAGGCTGTTGCTTTCTCTTC-GGTACCTACATCAGGTA 355 ||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||| Sbjct 297 GCCAAAGTGTGAGTTGTCCTTTCAGGCAATTGCTTTCTCTTCAGCT-CCTACATCAGGTA 355 Query 356 CTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATTTATCATTCGTATAAGCATTTGCT 415 |||||| ||||||||| |||||||||||||||||||| |||||||||| ||||||||| Sbjct 356 CTTGTGTGGTAATAGCACTAAGACCTTTTACGAGATTTGTCATTCGTATTAGCATTTGC- 414 Query 416 TTCC-TGGAGCAACTGAGTGGATTACTCAAGATTTTTCTTGCTCTCATGGATTTGAGCCG 474 | || |||||||||||||||| ||||||||||||||||||||||||| |||||||| || Sbjct 415 TACCTTGGAGCAACTGAGTGGGTTACTCAAGATTTTTCTTGCTCTCACGGATTTGACCCA 474 Query 475 TACATGCATAGCAATCTTGTCTATGCCAATGGTCACTTCTATTGCTTCAGCTCGGGAGGT 534 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 475 TACATGCATAGCAACCTTGTCTATGCCAATGATCACTTCTATTGCTTCAGCTCGGGCGGT 534 Query 535 GTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGCATGGAATGAACAT 594 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 535 GTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGTATGGAATGAACAT 594 Query 595 ATATGCCCTTATATTCATA 613 | |||||||||||| |||| Sbjct 595 AGATGCCCTTATATGCATA 613 > Ahg489854 jgi|Araly1|489854|fgenesh2_kg.6__2988__AT4G10660.1 Length=922 Score = 761 bits (412), Expect = 0.0 Identities = 559/628 (89%), Gaps = 18/628 (3%) Strand=Plus/Plus Query 52 GCATGGCGTAAAGCCGCTGAATCA-GTTCGGGTTGTGGAGAAGCATCCATGGGTTATCAG 110 |||| ||||||||||||||||| | |||||||||| ||| ||||||||||||||||||| Sbjct 40 GCATTGCGTAAAGCCGCTGAAT-ATGTTCGGGTTGCGGAAAAGCATCCATGGGTTATCAC 98 Query 111 CTTTCCGAGACATTACGGCGTGACTATTC-TC-TTCGATCCATTGGGAA-GGAAGAGTTA 167 |||||||| |||| | | | |||| | || || || |||||||| |||| ||||||| || Sbjct 99 CTTTCCGAAACATGATGACTTGACCA-TCTTCATT-GATCCATT-GGAACGGAAGAGGTA 155 Query 168 CACACTGAATTTACCCGAGTTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTT 227 ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 156 CACACTGAATTTACCCGAGTTAGCTGGAACCGATGTTTGTTACTCGAAATACGGATGGTT 215 Query 228 GCTTATGCGAAGATCCAGTTTAGTGGACATGTTCTTCCTCAACCCGTATACTAGGGAGCT 287 |||||||||||||| | ||||||||||||||||||| ||||||| |||||| | ||||| Sbjct 216 GCTTATGCGAAGATTGAATTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCT 275 Query 288 TATAAACTTGCCAAAGTGTGAGTTGTCCTTTCAGGCTG-TTGCTTTCTCTTCGGTACCTA 346 |||||| || |||||||||||||||||||| ||||| | ||||||||||||| | |||| Sbjct 276 TATAAATTTACCAAAGTGTGAGTTGTCCTTCCAGGC-GATTGCTTTCTCTTCTGCCCCTA 334 Query 347 CATCAGGTACTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATTTATCATTCGTATAA 406 |||| |||||||||||||||||||||||||||||||||||||||| || | ||||||||| Sbjct 335 CATCGGGTACTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATATAGCGTTCGTATAA 394 Query 407 GCATTTGCT-TTCCTGGAGCAACTGAGTGGATTACTCAAGATTTTTCTTGCTCTCA-TGG 464 ||||||| | ||||||||| | ||||||||||||||||||||||||||||||| | ||| Sbjct 395 GCATTTG-TCATCCTGGAGCCATTGAGTGGATTACTCAAGATTTTTCTTGCTCT-ATTGG 452 Query 465 ATTTGAGCC-GTACATGCATAGCAATCTTGTCTATGCCAATGGTCACTTCTATTGCTTCA 523 |||||| || |||||||||||| | |||||||| ||||||| ||||||||||||||||| Sbjct 453 ATTTGA-CCTATACATGCATAGCGACCTTGTCTACGCCAATGATCACTTCTATTGCTTCA 511 Query 524 GCTCGGGAGGTGTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGCAT 583 ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 512 GCTCGGGCGGTGTTTTAGTAGACTTTGATCTATCTTCCCGCACAATGAGTCATCAAGCAT 571 Query 584 GGAATGAACATATATGCCCTTATATTCATA-TGTACAATGAAGAATGGTTTAGTCTTAGG 642 |||||||||||| ||||||||||||||||| || | ||||| |||||||||| | | | Sbjct 572 GGAATGAACATAGATGCCCTTATATTCATAATG-ATAATGATGAATGGTTTAATATGCTG 630 Query 643 AAGAGAATTTACTTGGCTGAGCAGAAAG 670 |||||||||||||| | ||||||||||| Sbjct 631 AAGAGAATTTACTTAGTTGAGCAGAAAG 658 > Ahg942886 jgi|Araly1|942886|scaffold_603430.1 Length=337 Score = 302 bits (163), Expect = 3e-81 Identities = 271/320 (85%), Gaps = 20/320 (6%) Strand=Plus/Plus Query 292 AACTTGCCAAAGTGTGAGTTGTCCTTTCAGGCTG-TTGCTTTCTCTTCGGT-ACCTACAT 349 ||||| ||||||||| |||||||||| ||| | | ||||||||||||| | || |||| Sbjct 33 AACTTACCAAAGTGTAAGTTGTCCTTCCAGAC-GATTGCTTTCTCTTC-ATCCCCAACAT 90 Query 350 CAGGTACTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATTTATCATTCGTA-TAAGC 408 | |||| |||||| |||||||||||||||||||| | ||||| || | | |||| | ||| Sbjct 91 CGGGTATTTGTGCTGTAATAGCGTTAAGACCTTTGATGAGATATAGCGTCCGTAGT-AGC 149 Query 409 ATTTGCTTTCCTGGAGCAACTGAGTGGATTACTCAAGATTTTTCTTGCTCTCATGGATTT 468 ||||||| || |||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 150 ATTTGCTATCTTGGAGCAATTGAGTGGATTACTCAAGATTTTCCTTGCTCTCATGGATTT 209 Query 469 GAGCCGTACATGCATAGCAATCTTGTCTATGCCAATGGTCACTTCTATTGCTTCAGCTCG 528 || || |||||||||||||| ||| |||||||||||| ||||||||||||||||||||| Sbjct 210 GATCCATACATGCATAGCAACCTTTTCTATGCCAATGATCACTTCTATTGCTTCAGCTC- 268 Query 529 GGAGGTGTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGCATGGAAT 588 | |||| || || || | || | |||||||||||||||||||||||||||||| Sbjct 269 -G-GGTG--GTA-TT---TTAG-TC--G--TCCCGCACAATGAGTCATCAAGCATGGAAT 315 Query 589 GAACATATATGCCCTTATAT 608 |||||| |||||||||||| Sbjct 316 AAACATAGATGCCCTTATAT 335 > Ahg895453 jgi|Araly1|895453|Al_scaffold_0006_3449 Length=702 Score = 60.2 bits (32), Expect = 2e-08 Identities = 38/41 (93%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 406 AGCATTTGCTTTCCTGGAGCAACTGAGTGGATTACTCAAGA 446 |||| |||| |||||||||||||||||||||||||||||| Sbjct 127 AGCACTTGCCATCCTGGAGCAACTGAGTGGATTACTCAAGA 167 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25923583560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5