BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10790.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489923 jgi|Araly1|489923|fgenesh2_kg.6__3057__AT4G10790.1 2172 0.0
> Ahg489923 jgi|Araly1|489923|fgenesh2_kg.6__3057__AT4G10790.1
Length=1598
Score = 2172 bits (1176), Expect = 0.0
Identities = 1495/1639 (91%), Gaps = 61/1639 (4%)
Strand=Plus/Plus
Query 1 GGAAAATCGAATTAGGGTTTT-CTGAAAATGGTTGATACTGTTGACAAATTAGGTTACTT 59
|||||||| |||||||||||| | || ||||||||||||||| |||||||||||||||||
Sbjct 1 GGAAAATCAAATTAGGGTTTTGC-GATAATGGTTGATACTGTCGACAAATTAGGTTACTT 59
Query 60 CCAAGCGATTACAGGTCTCGAAGATGCTGATTTGTGTACTGAGATCCTTCAAGCTCATGG 119
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 60 CCAAGCGATTACAGGTCTTGAAGATGCCGATTTGTGCACTGAGATCCTTCAAGCTCATGG 119
Query 120 TTGGGACCTAGAACTAGCAATCTCTTCATTCACATCTTCTGATCAAGACGCTTCGTCTTC 179
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 TTGGGACCTAGAACTCGCAATCTCTTCATTCACATCTTCTGATCATGACGCTTCGTCTTC 179
Query 180 CGCCGTCGAT-GGTGGTGGTAACAATCGCGATCACGATCACAATAACGCCACCGTGACTC 238
||||| || | | |||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 180 CGCCGCCG-TCGATGGTGGTAACAATCACGATCACGATCACGATAACGCCGCCGTGACTC 238
Query 239 CTGATTATCCACCTCGCGGGATCGTTGACGATACAGAGCTTGTTATGCGTGATGATGGAG 298
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTGATTATCAACCTCGTGGGATCGTTGACGATACAGAGCTTGTTATGCGTGATGATGGAG 298
Query 299 GAGGAAATCGAGGTCCAGGAGTTGCGTGGAGGATTATTACTTTACCGATTTCGATTGTTT 358
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 GAGGCAATCGAGGTCCTGGAGTGGCGTGGAGGATTATTACTTTACCGATTTCGATTGTTT 358
Query 359 CTGGTAGCTTAGGGTTAGTTTCTGGAGCGATCGGGTTAGGTATTTGGGCCGCTGGTGGTG 418
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 359 CTGGTAGCTTAGGGTTAGTTTCCGGAGCGATCGGGTTAGGGATTTGGGCTGCTGGTGGTG 418
Query 419 TTTTATCGTATT-CTCTTGGTATGTTAGGGTTTAGATCAGGGAGA---GGTGG-T----- 468
|||||||||||| || ||||||||||||||||||||||||||||| ||||| |
Sbjct 419 TTTTATCGTATTCCT-TTGGTATGTTAGGGTTTAGATCAGGGAGAGGTGGTGGTTCGGCG 477
Query 469 GGTTCG--G-AATCGGCTCGGCTTGTTTCGGTTTCTTCTGCTGTTGGTGAAGCGATGGAG 525
|||||| | |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 478 GGTTCGTCGTCGTCGGCTCGGCTTGTTTCGGTTTCTTCGGCTGCTGGTGAAGCGATGGAG 537
Query 526 TTTGTTGCTTTGTTTGATAGAGATTA-TGG-G-AGTAATAATGCTTTTAAGATTGATTTT 582
|||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||||
Sbjct 538 TTTGTTGCTTTGTTTGATAGAGATTATTGGAGTAATAATAATGCTTTTAAGATTGATTTT 597
Query 583 GTTGTGGAAGGATTTATGGATGCGCTTCAGCGATCTAGGAGTTCGTTTAAGCTCTTGTTT 642
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 598 GTAGTGGAAGGATTTATGGATGCGCTTCAGCGATCTAGGAGCTCGTTTAAGCTCTTGTTT 657
Query 643 GTTTACTTGCATTCTCCGGATCATCCTGATACACCTGTGTTTTGTGGTGGAACGCTTTGT 702
|||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||
Sbjct 658 GTTTACTTGCATTCTCCGGATCATCCTGATACGCCTATGTTTTGTGATGGGACGCTTTGT 717
Query 703 AATGAAGCCGTTGTAGCGTTTGTTAATGAGAATTTTGTTTCTTGGGGAGGTAGTATTCGA 762
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AATGAAGCGGTTGTAGCGTTTGTTAATGAGAATTTTGTTTCTTGGGGAGGTAGTATTCGA 777
Query 763 TCTAGTGAAGGGTTTAAGATGAGTAATAGCTTGAAGGCATCGAGGTTCCCGTTTTGCGCT 822
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 778 TCTAGTGAAGGATTTAAGATGAGTAATAGCTTGAAAGCATCGAGGTTTCCGTTTTGCGCT 837
Query 823 GTGGTTATGCCTGCTGCTAACCAGAGAATTGCTCTTCTTCAGCAGGTCGAGGGACCAAAA 882
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 838 GTTGTTATGCCTGCTGCTAATCAGAGAATTGCTCTTCTTCAGCAGGTTGAGGGACCAAAA 897
Query 883 TCTCCGGAAGAGATGCTTGCCATACTCCAGAGAATTGTAGAAGATAGCTCACCTACTTTG 942
||||| ||||| |||||||| ||||| |||||| ||||||||||||| |||||||| ||
Sbjct 898 TCTCCAGAAGAAATGCTTGCTATACTACAGAGAGTTGTAGAAGATAGTTCACCTACCCTG 957
Query 943 GTAACTGCTAGGGTTGAGGCGGAGGAAAGAAGAACCAATCTGCGTCTGAGAGAGGAACAA 1002
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 958 GTAACTGCTAGGGTTGAGGCAGAGGAAAGAAGAACCAATCTGCGTCTGAGAGAGGAACAA 1017
Query 1003 GATGCTGCTTACCGTGCTGCTCTTGAAGCCGATCAAGCAAGggagcaacagagacaggag 1062
|||||||||||||| ||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 1018 GATGCTGCTTACCGGGCTGCTCTTGAAGCCGATCAAGCAAGGGAGCGAGAGAGACGGGAA 1077
Query 1063 gagaaagagcgtttagagagagaagctgctgaggcagagaggaaactcaaagaagaagaa 1122
||| |||| ||||||||||| ||||||||||||| | | | || || | |
Sbjct 1078 GAGGAAGAACGTTTAGAGAGGGAAGCTGCTGAGG-A-A-A--AA-------GA-G--G-- 1120
Query 1123 gaggctcgggagagagcagcgcgtgaagctgaagagagaCAAGCTGCTAGAGTGCGAATG 1182
||| ||||||||||| |||||||||| ||||| | |||||||||||||| |||||
Sbjct 1121 ----CTCAGGAGAGAGCAGAACGTGAAGCTGCAGAGAAAGAAGCTGCTAGAGTGAGAATG 1176
Query 1183 AGACAAGAGAAAGCTCTTGCTCTTGGAGAAGAACCTGAGAAAGGCCCTGATGTTACACAA 1242
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1177 AGACAAGAGAAAGCACTTGCTATTGGAGATGAACCTGAGAAAGGCCCTGATGTTACACAA 1236
Query 1243 GTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGCGAAACCAAG 1302
|| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1237 GTTTTGGTACGGTTCCCGAATGGAGAAAGGAAAGGGAGGATGTTTAAGAGCGAAACCAAG 1296
Query 1303 ATCCAGACATTGTATGACTACGTGGATTCACTTGGACTCTTAGATACAGAAGAGTACAGC 1362
|||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1297 ATCCAGACATTGTACGACTACGTTGATTCACTTGGAGTCTTAGATACAGAAGAGTACAGC 1356
Query 1363 TTAATCACAAACTTCCCAAGGACAGTGTATGGGAGAGACAAAGAGTCAATGTCACTGAAA 1422
|||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct 1357 TTAATCACAAACTTCCCAAGGACAGTTTACGGAAGAGACAAAGAGTCAATGTCACTAAAA 1416
Query 1423 GACGCAGGTTTGCATCCTCAGGCAAGTCTCTTCATCGAGATCAACTAAAAT-TGCTGATT 1481
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1417 GACGCAGGTTTGCATCCTCAGGCAAGTCTCTTCATCGAGATCAACTAAAAACTGCTGATT 1476
Query 1482 CTTCTGTTTCTTTCTCCTTTAGCCCCTCGTTAATTTTCAGTTTTTTCTCTATTTGAA-AT 1540
|||||| ||||||||||||| | || | ||| |||||||||||| || ||
Sbjct 1477 CTTCTGCTTCTTTCTCCTTT------T--TT--T---CAGGTTTTTCTCTATT--AAGAT 1521
Query 1541 ATATAGTTTGTTGCTTCAATGATACATTGGACGAGATATTACATATATAATATACGTACA 1600
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||
Sbjct 1522 ATTTAGTTTGTTGCTTCAGTGATACATTGGACGTGATATTACATATATAATATAC--ACA 1579
Query 1601 CATATATTCAGAAGTTGCG 1619
|||||||||||||||||||
Sbjct 1580 CATATATTCAGAAGTTGCG 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5