BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11220.1 Length=1298 Score E Sequences producing significant alignments: (Bits) Value Ahg942960 jgi|Araly1|942960|scaffold_603504.1 1219 0.0 Ahg945747 jgi|Araly1|945747|scaffold_701976.1 680 0.0 > Ahg942960 jgi|Araly1|942960|scaffold_603504.1 Length=856 Score = 1219 bits (660), Expect = 0.0 Identities = 780/838 (93%), Gaps = 8/838 (1%) Strand=Plus/Plus Query 208 ATCGGAAACAATGGCGGATGAACATAAGCATGAAGAATCTTCACCTAATTTGGATCCAGC 267 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11 ATCGGTAACAATGGCGGATGAACATAAGCATGAAGAATCTTCACCTAATTTGGATCCAGC 70 Query 268 AGTGGAGGTTGTAGAGAGGGAATCGTTGATGGAGAAGTTATCGGAGAAGATCCATCACAA 327 ||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 71 GGTGGAAGTTGTAGAGAGGGAATCGTTGATGGAGAAGATATCGGAGAAGATTCATCACAA 130 Query 328 AGGTGATTCGTCGTCTTCATCATCATCAGATGACGA--A-AACGAGAAGAAGTCTTCGTC 384 ||||||||| ||||| || || ||||||||||| || | || || ||||||||||| || Sbjct 131 AGGTGATTCTTCGTCGTCGTCTTCATCAGATGATGATGAGAAAGAAAAGAAGTCTTC-TC 189 Query 385 ATCGTCTCCAAAGTCTTTGAAATCGAAGGTTTATCGTTTGTTCGGAAGAGAGAGACCTGT 444 ||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 190 --CGTCTCCGAAGTCTTTGAAATCGAAGGTTTATCGTTTGTTTGGTAGAGAGAGACCTGT 247 Query 445 TCATAAGGTTCTCGGCGGCGGAAAACCGGCAGATATATTTATGTGGAAGGACAAGAAAAT 504 |||||| |||||||||| ||||||||||| |||||||||||||||||| ||||||| || Sbjct 248 GCATAAGATTCTCGGCGGTGGAAAACCGGCGGATATATTTATGTGGAAGAACAAGAAGAT 307 Query 505 GTCAGGAGGTGTATTTGGCGGTGCTACAGTGGCATGGGTGCTATTTGAATTGATGGAGTA 564 |||||| ||||||||||| ||||||||||| || |||||| ||||||||||||||||||| Sbjct 308 GTCAGGTGGTGTATTTGGTGGTGCTACAGTAGCGTGGGTGTTATTTGAATTGATGGAGTA 367 Query 565 TCATCTTCTTACTCTGTTATGTCACGTTATGATCGTTGCTCTTGCTGTGTTGTTTCTATG 624 |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 368 TCATCTTCTTACTCTGCTATGTCACGTTATGATCGTTGCGCTTGCTGTGTTGTTTCTATG 427 Query 625 GTCTAATGCCACTATGTTCATTCACAAGTCTCCACCAAAGATTCCTGAAGTTCATATCCC 684 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 428 GTCTAATGCCACTATGTTCATTCACAAGTCTCCACCAAAGATTCCCCAAGTACATATCCC 487 Query 685 TGAAGAACCTCTTCTTCAGCTTGCTTCGGGTCTTAGAATCGAAATCAACCGTGGGATCTC 744 |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 488 TGAAGAACCTTTTCTTCAGCTTGCTTCGGGTCTTAGAATCGAAATCAACCGTGGGTTCTC 547 Query 745 TTCTCTTCGTGAGATTGCGTCGGGGAGGGATATCAAGAAGTTCCTCTCTGCTATTGCCGG 804 |||||||||||||||||| || || |||||| ||||||| |||||||||||||||||||| Sbjct 548 TTCTCTTCGTGAGATTGCATCTGGAAGGGATCTCAAGAAATTCCTCTCTGCTATTGCCGG 607 Query 805 ATTGTGGGTTCTATC-GATCTTGGGCGGCTGCTATAGTTTCTTGACATTGGCATACATAG 863 |||||||||| |||| | |||||||||| |||| | |||||||||||||||||||||||| Sbjct 608 ATTGTGGGTTTTATCAG-TCTTGGGCGGATGCTGTTGTTTCTTGACATTGGCATACATAG 666 Query 864 CTCTGGTTCTGCTCTTCACTGTTCCTCTTTTCTACGACAAGTACGAAGACAAAGTAGACT 923 ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 667 CTCTGGTTCTGCTCTTCACTGTTCCTCTTCTCTACGACAAATACGAAGACAAAGTAGACG 726 Query 924 CATACGGTGAGAAAGCAATGGCTGAGTTGAAGAAGCAATACGCTGTGTTGGACGCAAAGG 983 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 727 CATACGGTGAGAAAGCAATGGCGGAGTTGAAGAAGCAATACGCTGTGTTCGACGCAAAGG 786 Query 984 TATTCAGCAAAATCCCAAGAGGACCGTTGAAAGACAAGAAGAAGGATTAGtttttttt 1041 |||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 787 TATTGAGCAAAATCCCAAGGGGACCTTTGAAAGACAAGAAGAAGGATTAGTTTTTTTT 844 > Ahg945747 jgi|Araly1|945747|scaffold_701976.1 Length=860 Score = 680 bits (368), Expect = 0.0 Identities = 699/852 (82%), Gaps = 49/852 (6%) Strand=Plus/Plus Query 212 GAAACAATGGCGGATGAACATAAGCATGAAGAATCT-TCA-C-CTAATTTGGATCCAGCA 268 ||||| |||||||| ||||||||||||||||||||| | | | || | || ||||| Sbjct 15 GAAACGATGGCGGAAGAACATAAGCATGAAGAATCTGTGATCGCT--CCT-GAGCCAGCT 71 Query 269 GTGGAGGTTGTAGAGAGGGAATCGTTGATGGAGAAGTTATCGGAGAAGATCCATCACAAA 328 || |||||||| ||||| ||| | |||| ||| |||||||||||||||||||| Sbjct 72 GTTGAGGTTGTGGAGAGAGAA-C-----TGGACAAGATATCGGAGAAGATCCATCACGGT 125 Query 329 GGTGA---TTCGTCGTCTTCATCATCATCAGATGACGAAAAC--G-AGAAGAAGTCT--- 379 ||||| ||| ||||| || ||||| || ||||| ||| || | |||||||| || Sbjct 126 GGTGATTCTTCTTCGTCATCTTCATCTTCTGATGATGAAGACGAGAAGAAGAAGACTAAG 185 Query 380 TCGTCATCGTCTCCAAAGTCTTTGAAATCGAAGGTTTATCGTTTGTTCGGAAGAGAG-AG 438 | | || ||||| |||| |||||||||| ||||| || |||||||| |||||| || Sbjct 186 AAGCCGTCTTCTCCTTCGTCTATGAAATCGAAAGTTTACCGCTTGTTCGGTAGAGAGCAG 245 Query 439 ACCTGTTCATAAGGTTCTCGGCGGCGGAAAACCGGCAGATATATTTATGTGGAAGGACAA 498 ||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||| |||| Sbjct 246 -CCTGTTCATAAGGTTCTTGGCGGTGGAAAGCCGGCTGATATATTCATGTGGAAGAACAA 304 Query 499 GAAAATGTCAGGAGGTGTATTTGGCGGTGCTACAG-TGGCATGGG-TGCTATTTGAATTG 556 ||| ||||| || |||||| |||| |||||||||| | || |||| || | ||||||||| Sbjct 305 GAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCT-GCTTGGGTTG-TGTTTGAATTG 362 Query 557 ATGGAGTATCATCTTCTTACTCTG-TTATGTCACGTTATGATCGTTGCTCTTGCTGTGTT 615 |||||||| |||||||| |||||| || || ||||| ||||| |||| |||||||||| | Sbjct 363 ATGGAGTACCATCTTCTCACTCTGCTT-TGCCACGTGATGATTGTTGTTCTTGCTGTGCT 421 Query 616 GTTTCTATGGTCTAATGCCACTATGTTCATTCACAAGTCTCCACCAAAGATTCCTGAAGT 675 |||| | |||||||||||||| ||||||||| ||||||| |||||||||||||||||||| Sbjct 422 GTTTTTGTGGTCTAATGCCACCATGTTCATTAACAAGTCCCCACCAAAGATTCCTGAAGT 481 Query 676 TCATATCCCTGAAGAACCTCTTCTTCAGCTTGCTTC-GGGTCTTAGAATCGAAATCAACC 734 ||||||||||||||| ||| ||||||||||||| || ||| || |||||||| ||||||| Sbjct 482 TCATATCCCTGAAGAGCCTATTCTTCAGCTTGCGTCTGGG-CTCAGAATCGAGATCAACC 540 Query 735 GTGGGAT-CTCTTCTCTTCGTGAGATTGCGTCGGGGAGGGATATCAAGAAGTTCCTC-TC 792 |||| || ||||||||||||||| ||||| || || |||||| ||||||| |||||| | Sbjct 541 GTGG-ATTCTCTTCTCTTCGTGAAATTGCATCTGGAAGGGATCTCAAGAAATTCCTCAT- 598 Query 793 TGCTATTGCCGGATTGTGGGTTCTATCGATCTTGGGCGGCTGCTAT-AGTTTCTTGACAT 851 |||||||||||| |||||||||||||| |||||||| || |||| | | |||||||||| Sbjct 599 TGCTATTGCCGGTTTGTGGGTTCTATCAATCTTGGGTGGTTGCT-TCAACTTCTTGACAT 657 Query 852 TGGCATACATAGCTCTGGT-TCTGCTCTTCACTGTTCCTCTTTTCTACGACAAGTACGAA 910 |||||||||||||||| || | |||||||||| ||||||||| ||| |||||||| ||| Sbjct 658 TGGCATACATAGCTCTTGTGT-TGCTCTTCACGGTTCCTCTTGCCTATGACAAGTATGAA 716 Query 911 GACAAAGTAGACTCAT-ACGGTGAGAAAGCAATGG-CTGAGTTGAAGAAGCAATACGCTG 968 |||||||| ||| ||| | ||||||||||| || | ||| | || ||||| || || | Sbjct 717 GACAAAGTCGACCCATTA-GGTGAGAAAGCGGTGATC-GAGCTCAAAAAGCAGTATGCAG 774 Query 969 TGTTGGACGCA-AAGGTATTCAGCAAAATCCCAA-GAGGACCGTTGAAAGA-CAAGAAGA 1025 ||||||| | | ||||| || ||||| |||||| | || || ||||| || |||||||| Sbjct 775 TGTTGGATG-AGAAGGTGTTGAGCAAGATCCCACTG-GGCCCATTGAA-GAACAAGAAGA 831 Query 1026 AGGATTAGtttt 1037 | |||||| ||| Sbjct 832 AAGATTAGGTTT 843 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48530473341 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5