BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11300.1 Length=1391 Score E Sequences producing significant alignments: (Bits) Value Ahg489963 jgi|Araly1|489963|fgenesh2_kg.6__3097__AT4G11300.1 1840 0.0 > Ahg489963 jgi|Araly1|489963|fgenesh2_kg.6__3097__AT4G11300.1 Length=1284 Score = 1840 bits (996), Expect = 0.0 Identities = 1224/1326 (92%), Gaps = 48/1326 (4%) Strand=Plus/Plus Query 19 TTTATCAAAATTCTCTCTTTTTCCCA-AAAAGATTCACAAATTTGTTGTAGTCTCGCCG- 76 |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||| Sbjct 1 TTTATCAAAATTCTCTCTTTTTCCCACAAAAGATTCTCAAATTTGTTGTAATCTCTCCGT 60 Query 77 TTAAGATGGCGCCGGCGACGGAGCATCAGAGCTCGTTCTTGAGTCGACTAAGCCGTCGCA 136 |||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||| Sbjct 61 TTAA-ATGGCGCCGGCGACGGAGCATCAGAGTTCGTTCTTGAGTCGAATCAGCCGTCGCA 119 Query 137 ATCAAGTGGTTTCCATGGAGGTTAACCACGAGCAAGAGCAAGAAGAACTCGAAGATTTTC 196 ||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 120 GTCAGGTTGTTTCCATGGAGGTTAATCACGAGCAAGAGCTCGAAGAACTCGAAGATTTTC 179 Query 197 AAAAACACGTAGCTGAACGTTTCGCGGAGCTCTTACCACCGTCGGATTCGCCGGAATCTT 256 | |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||| Sbjct 180 AGAAACACGTAGCTGAGCGTTTCACCGAGCTCTTACCACCGTCGGATTCGCCGGAATCTC 239 Query 257 ACCCGATTCTTTCGATCCAGTGGCTAAGGAAGCTTCTTGATGTTTTCATGTCTATAGAAT 316 ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 240 ACCCGATTCTTTCGATCCAGTGGCTGAGGAAGCTTCTTGATGCTTTCATGTCTATAGAAT 299 Query 317 CGGAGTTTCATTCGGTTTTAACATCGAATCCGTCTCAGATCTCGAAACCTCCGTTGGATA 376 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 300 CGGAGTTTCGTTCGGTTTTAACAACGAATCCGTCTCAGATCTCGAAACCTCCGTTGGATA 359 Query 377 AGCTTGTACCGGAGATGCTTGATCGGATTGTTAAAGCTCTTGATATTTGTACCGCCGTAG 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AGCTTGTACCGGAGATGCTTGATCGGATTGTTAAAGCTCTTGATATTTGTACCGCCGTAG 419 Query 437 TCAACGGCGTTGACTCAGTCAGACAAATCCAACGTTGTGCGGAGATTGCTGTTACGGCGT 496 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 420 TCAACGGCGTTGACTCAGTCAGACAAATCCAGCGTTGTGCGGAGATTGCTGTTACGGCGT 479 Query 497 TGAAACAAACGCCGTTAAGTGACGGAAGCGTTAGGAGAGCTAAAAGAGCTCTTACAAGCC 556 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 480 TGAAACAAACGCCGTTAAGTGACGGAAGCGTTAGGAGAGCTAAACGGGCTCTTACAAGCC 539 Query 557 TCCTCGCCGCTTTAAACGCTGATAAAAACAGCGGTAGCAGCGGCGGAGGAAGTGGTAGGA 616 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 540 TCCTCGCCGCTTTAAACGCCGATAAAAATAGCGGTAGCAGCGGCGGAGGAAGTGGTAGGA 599 Query 617 GGTCATCGACGGATCAGTGGTCGTCGTTTGGTCGACGTAGCGGCGGAAGCAGCggaggag 676 ||||||||||||| |||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 600 GGTCATCGACGGAGCAGTGGTCGTCGTTTGGTCGACGTAGCGGCGGAAGC-G-G-AGGAG 656 Query 677 gaggaggaggagCAGGGTGTGTGAGTAAGAATTGGTCAGCGGCGAAGCAGATTCAAGCAA 736 |||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GAGG-G-----------TGTGTGAGTAAGAATTGGTCAGCGGCGAAGCAGATTCAAGCAA 704 Query 737 TGACGGCGAATCTTGTAGCGCCACGTGGAGGAGAGGCGTCGCCGATGTATATAATGAGTA 796 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 705 TGACGGCGAATCTCGTAGCGCCACGTGGCGGAGAGGCGTCGCCGATGTATATAATGAGTA 764 Query 797 GTGTGATGGTAATGGTGATGTGGACGTTAGTTGTAGCGGTTCCTTGTCAGACAAGTAACG 856 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 765 GTGTGATGGTAATGGTGATGTGGACGTTAGTTGTAGCGGTTCCTTGTCAAACAAGTAACG 824 Query 857 GCTTAATGGTTCATGTACCGCTGCCGAAGAATCAGGTATGGGCTAACGCGGCCGTGAGTA 916 |||||||||||||| ||||| |||||||||||||||| ||||||| ||| |||||||| | Sbjct 825 GCTTAATGGTTCATTTACCGTTGCCGAAGAATCAGGTTTGGGCTAGCGCCGCCGTGAGCA 884 Query 917 TCTCGGAGAGGGTCGGAGAAGAGATGAAACGGAAGGAGACGCG-TGGTGGTGGACTGATG 975 ||||||||||| ||||||||||||||||||||||||||||||| || |||||| ||||| Sbjct 885 TCTCGGAGAGGATCGGAGAAGAGATGAAACGGAAGGAGACGCGGTGC-GGTGGATTGATG 943 Query 976 GAGGAGATGCAGAGGATGGAGAGGATCGGGTTGAAGCTGATGGAGTTCAGTGAAGGGTTT 1035 |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 944 GAGGAGATGCAGAGGATGGAGAGGATTGGGTTGAAGATGATGGAGTTCAGTGAAGGGTTT 1003 Query 1036 AGGTTTAATGGGGAGGAGGATGTGGTGGCGGAAGTGGCGGAGATGGAGGAGATTTGCCGG 1095 |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1004 AGGTTTAATGGGGAGGAGGATGTGACGGCGGAAGTGGCGGAGATGGAGGAGATATGCCGG 1063 Query 1096 AAAATGGAAGATGGGCTTGAGGGGTTACAGAGAAGAGTTAGAGAAGTGTTTCATAGGTTG 1155 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct 1064 AAAATGGAAGATGGGCTTGAAGGGTTACAAAGAAGAGTTAGAGAAGTGTTTCATAGATTG 1123 Query 1156 GTGAAAAGCAGAAGTGAGATACTTGAAGTGATTGATCACTGATTGTAATCTTTTAACTTT 1215 |||||||||||||||||||| ||||||||||||||||||||||||||||||| || | | Sbjct 1124 GTGAAAAGCAGAAGTGAGATTCTTGAAGTGATTGATCACTGATTGTAATCTT--AA-TCT 1180 Query 1216 GTTGTTGTGAAAATTTAATCTTTGAGTTAACTCTTTTGATTAAGAAAAGAGAACAAATTA 1275 ||| || || | | | || | ||||| | |||||||| | |||||| Sbjct 1181 -TTGA-GT-AAC-TCT--T-TT-G-GTTAA--------A----GAAAAGAGTA-AAATTA 1218 Query 1276 CAGGTTTTT-ATTGTTTTATTTATG--TGATAATCTTTGATGTATATAAATTACAATTCG 1332 ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1219 CAGGTTTTTGATTGTTTTATTTATGAATGATAATCTTTGATGTATATAAATTACAGTTCG 1278 Query 1333 TAATTA 1338 |||||| Sbjct 1279 TAATTA 1284 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51993184425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5