BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G11410.1

Length=1310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942999 jgi|Araly1|942999|scaffold_603543.1                       1531    0.0  
  Ahg946628 jgi|Araly1|946628|scaffold_702857.1                       99.0    8e-20


> Ahg942999 jgi|Araly1|942999|scaffold_603543.1
Length=997

 Score = 1531 bits (829),  Expect = 0.0
 Identities = 946/1002 (94%), Gaps = 9/1002 (1%)
 Strand=Plus/Plus

Query  127   GAAGATAGAAACAA-AACAAACATGTGGCCTTTTTGGTGGAAAGGAGCATCTGGGTTCTC  185
             ||||| | |||||| | |||| |||||||| |||||||||||||||||||||||||||||
Sbjct  1     GAAGACA-AAACAACATCAAA-ATGTGGCCATTTTGGTGGAAAGGAGCATCTGGGTTCTC  58

Query  186   TGCTCGTTCCACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACTGCTAT  245
              ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  59    AGCTCGTTCCACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACAGCTAT  118

Query  246   CGTCACAGGAGCATCAAGTGGTATTGGGGAAGAGACTACTCGTGTTCTTGCTCTTCGTGG  305
             ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct  119   CGTCACAGGAGCATCAAGTGGTATTGGGGAAGAGACTACGCGTGTTCTTTCTCTTCGTGG  178

Query  306   TGTTCATGTTGTAATGGCGGTAAGGAATACAGATTCTGGTAATCAAGTCAGAGATAAGAT  365
             ||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct  179   TGTTCATGTTGTAATGGCGGTAAGGAACATAGATTCTGGTAATCAAGTTAGAGAAAAGAT  238

Query  366   ACTTAAGGAAATACCTCAGGCTAAGATTGATGTAATGAAGTTGGATCTTAGCTCTATGGC  425
             ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct  239   ACTTAAGGAAACACCTGAGGCTAAGATTGATGTAATGAAGTTAGATCTTAGCTCTATGGC  298

Query  426   TTCTGTCAGGAGCTTTGCATCAGAGTATC-AGTCTTTGGACCTTCCCTTGAATCTTCTCA  484
             ||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||
Sbjct  299   TTCTGTCAGGAGCTTTGCATCAGAGTA-CAAGTCTTTGAACCATCCCTTGAATCTTCTCA  357

Query  485   TCAATAATGCGGGGATTATGGCATGTCCCTTCTTGCTTTCTAGCGACAACATTGAATTAC  544
             |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  358   TCAATAATGCAGGGATTATGGCATGTCCCTTCATGCTTTCTAGCGACAACATTGAATTAC  417

Query  545   AGTTTGCAACCAATCATTTGGGTCATTTTCTGTTGACAAACCTTCTTTTGGAGAGGATGA  604
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  418   AGTTTGCAACCAATCATTTGGGTCATTTTCTGTTGACAAACCTTCTTTTGGAGACAATGA  477

Query  605   AGAAAACAGCTAGTGAAAGCAATAGAGAAGGAAGAATTGTTATTGTCTCATCAGAAGGTC  664
             |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  478   AGAAAACAGCTAATGAAAGCAATAGAGAAGGAAGAATTGTTATTGTCTCGTCAGAAGGTC  537

Query  665   ATCGATTTGCTTACCGGGAAGGTGTTCAGTTTGACAAAATAAATGATGAAGCAAGGTACA  724
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct  538   ATCGATTTGCTTACCGGGAAGGTGTTCGGTTTGACAAAATAAATGATGAAGCAAGTTACA  597

Query  725   ATACTTTGCAAGCATATGGTCAGTCAAAGCTCG-GTAACATCTTGCACGCTACTGAGCTC  783
             ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct  598   ATACTTTGCAAGCATATGGTCAGTCAAAGCT-GTGTAACATATTGCACGCTACTGAGCTC  656

Query  784   GCTAGGCTATTCAAGGAACAAGGTGTGAATATCACTGCTAATTCACTTCATCCTGGATCC  843
             ||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  657   GCTAGGCAAATCAAGGAACAAGGTGTGAATATCACTGCTAATTCACTTCATCCCGGATCC  716

Query  844   ATTATGACCAATCTTTTACGCTACCACAGCTTCATAAATACAATTGGTAATGCGGTGGGG  903
             ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  717   ATTATGACCAATCTTTTGCGCTACCACAGCTTCATAAATACGATTGGTAATGCGGTGGGA  776

Query  904   AAGTATGTGCTGAAGAGCATTCCACAGGGAGCGGCAACTACCTGTTATGCTGCGCTTCAT  963
             ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||
Sbjct  777   AAGTATGTGCTGAAGAGTATTCCCCAGGGAGCGGCAACTACGTGTTATGCTGCGCTACAT  836

Query  964   CCTCAGGCAAAAGGAGTGAGTGGAGAATACTTGATGGACAACAACATATCTGACCCTAAT  1023
             |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct  837   CCTCAGGCAAAAAGAGTGAGTGGAGAATACTTGATGGACAGCAACATATCTAACCCTCAT  896

Query  1024  TCTCAGGGTAAAGACAAAGATCTGGCCAAAAAACTATGGGAGTTTAGCTTGAGGCT-AAC  1082
             ||||||||||||||||||||| | ||||| |||||||||||||| |||||||  || |||
Sbjct  897   TCTCAGGGTAAAGACAAAGATTTAGCCAAGAAACTATGGGAGTTCAGCTTGAC-CTTAAC  955

Query  1083  TGGTGAAGAAGAATCATAGATACTTTTTCGAAGTTACAGTCT  1124
             ||||||||||||||||||||||||||| | |||||||| |||
Sbjct  956   TGGTGAAGAAGAATCATAGATACTTTTGCTAAGTTACAATCT  997


> Ahg946628 jgi|Araly1|946628|scaffold_702857.1
Length=329

 Score = 99.0 bits (53),  Expect = 8e-20
 Identities = 57/59 (97%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  195  CACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACTGCTATCGTCACAG  253
            ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct  1    CACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACAGCTATTGTCACAG  59



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 48987948345


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5