BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11410.1 Length=1310 Score E Sequences producing significant alignments: (Bits) Value Ahg942999 jgi|Araly1|942999|scaffold_603543.1 1531 0.0 Ahg946628 jgi|Araly1|946628|scaffold_702857.1 99.0 8e-20 > Ahg942999 jgi|Araly1|942999|scaffold_603543.1 Length=997 Score = 1531 bits (829), Expect = 0.0 Identities = 946/1002 (94%), Gaps = 9/1002 (1%) Strand=Plus/Plus Query 127 GAAGATAGAAACAA-AACAAACATGTGGCCTTTTTGGTGGAAAGGAGCATCTGGGTTCTC 185 ||||| | |||||| | |||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1 GAAGACA-AAACAACATCAAA-ATGTGGCCATTTTGGTGGAAAGGAGCATCTGGGTTCTC 58 Query 186 TGCTCGTTCCACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACTGCTAT 245 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 59 AGCTCGTTCCACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACAGCTAT 118 Query 246 CGTCACAGGAGCATCAAGTGGTATTGGGGAAGAGACTACTCGTGTTCTTGCTCTTCGTGG 305 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 119 CGTCACAGGAGCATCAAGTGGTATTGGGGAAGAGACTACGCGTGTTCTTTCTCTTCGTGG 178 Query 306 TGTTCATGTTGTAATGGCGGTAAGGAATACAGATTCTGGTAATCAAGTCAGAGATAAGAT 365 ||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||| Sbjct 179 TGTTCATGTTGTAATGGCGGTAAGGAACATAGATTCTGGTAATCAAGTTAGAGAAAAGAT 238 Query 366 ACTTAAGGAAATACCTCAGGCTAAGATTGATGTAATGAAGTTGGATCTTAGCTCTATGGC 425 ||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 239 ACTTAAGGAAACACCTGAGGCTAAGATTGATGTAATGAAGTTAGATCTTAGCTCTATGGC 298 Query 426 TTCTGTCAGGAGCTTTGCATCAGAGTATC-AGTCTTTGGACCTTCCCTTGAATCTTCTCA 484 ||||||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||| Sbjct 299 TTCTGTCAGGAGCTTTGCATCAGAGTA-CAAGTCTTTGAACCATCCCTTGAATCTTCTCA 357 Query 485 TCAATAATGCGGGGATTATGGCATGTCCCTTCTTGCTTTCTAGCGACAACATTGAATTAC 544 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 358 TCAATAATGCAGGGATTATGGCATGTCCCTTCATGCTTTCTAGCGACAACATTGAATTAC 417 Query 545 AGTTTGCAACCAATCATTTGGGTCATTTTCTGTTGACAAACCTTCTTTTGGAGAGGATGA 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 418 AGTTTGCAACCAATCATTTGGGTCATTTTCTGTTGACAAACCTTCTTTTGGAGACAATGA 477 Query 605 AGAAAACAGCTAGTGAAAGCAATAGAGAAGGAAGAATTGTTATTGTCTCATCAGAAGGTC 664 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 478 AGAAAACAGCTAATGAAAGCAATAGAGAAGGAAGAATTGTTATTGTCTCGTCAGAAGGTC 537 Query 665 ATCGATTTGCTTACCGGGAAGGTGTTCAGTTTGACAAAATAAATGATGAAGCAAGGTACA 724 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 538 ATCGATTTGCTTACCGGGAAGGTGTTCGGTTTGACAAAATAAATGATGAAGCAAGTTACA 597 Query 725 ATACTTTGCAAGCATATGGTCAGTCAAAGCTCG-GTAACATCTTGCACGCTACTGAGCTC 783 ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| Sbjct 598 ATACTTTGCAAGCATATGGTCAGTCAAAGCT-GTGTAACATATTGCACGCTACTGAGCTC 656 Query 784 GCTAGGCTATTCAAGGAACAAGGTGTGAATATCACTGCTAATTCACTTCATCCTGGATCC 843 ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 657 GCTAGGCAAATCAAGGAACAAGGTGTGAATATCACTGCTAATTCACTTCATCCCGGATCC 716 Query 844 ATTATGACCAATCTTTTACGCTACCACAGCTTCATAAATACAATTGGTAATGCGGTGGGG 903 ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 717 ATTATGACCAATCTTTTGCGCTACCACAGCTTCATAAATACGATTGGTAATGCGGTGGGA 776 Query 904 AAGTATGTGCTGAAGAGCATTCCACAGGGAGCGGCAACTACCTGTTATGCTGCGCTTCAT 963 ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||| Sbjct 777 AAGTATGTGCTGAAGAGTATTCCCCAGGGAGCGGCAACTACGTGTTATGCTGCGCTACAT 836 Query 964 CCTCAGGCAAAAGGAGTGAGTGGAGAATACTTGATGGACAACAACATATCTGACCCTAAT 1023 |||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || Sbjct 837 CCTCAGGCAAAAAGAGTGAGTGGAGAATACTTGATGGACAGCAACATATCTAACCCTCAT 896 Query 1024 TCTCAGGGTAAAGACAAAGATCTGGCCAAAAAACTATGGGAGTTTAGCTTGAGGCT-AAC 1082 ||||||||||||||||||||| | ||||| |||||||||||||| ||||||| || ||| Sbjct 897 TCTCAGGGTAAAGACAAAGATTTAGCCAAGAAACTATGGGAGTTCAGCTTGAC-CTTAAC 955 Query 1083 TGGTGAAGAAGAATCATAGATACTTTTTCGAAGTTACAGTCT 1124 ||||||||||||||||||||||||||| | |||||||| ||| Sbjct 956 TGGTGAAGAAGAATCATAGATACTTTTGCTAAGTTACAATCT 997 > Ahg946628 jgi|Araly1|946628|scaffold_702857.1 Length=329 Score = 99.0 bits (53), Expect = 8e-20 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 195 CACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACTGCTATCGTCACAG 253 ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1 CACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACAGCTATTGTCACAG 59 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48987948345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5