BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11650.1 Length=1039 Score E Sequences producing significant alignments: (Bits) Value Ahg489985 jgi|Araly1|489985|fgenesh2_kg.6__3119__AT4G11650.1 1170 0.0 Ahg943027 jgi|Araly1|943027|scaffold_603571.1 791 0.0 Ahg943024 jgi|Araly1|943024|scaffold_603568.1 451 4e-126 > Ahg489985 jgi|Araly1|489985|fgenesh2_kg.6__3119__AT4G11650.1 Length=801 Score = 1170 bits (633), Expect = 0.0 Identities = 747/803 (93%), Gaps = 4/803 (0%) Strand=Plus/Plus Query 1 ATCACACATACATAAAAGTAGTAGAACTAAAAAATGGCAAACC-TCTTGGTCTCTACTTT 59 |||||||||||| ||||| |||||||||||||||||||||||| || |||| ||| || Sbjct 1 ATCACACATACACAAAAGAAGTAGAACTAAAAAATGGCAAACCTTC-CAGTCTTTACGTT 59 Query 60 CATATTTTCCGCACTTTTGCTCATCTCCACCGCAACAGCCGCCACATTCGAAATCCTAAA 119 |||||| ||||||||||| |||||||||||||| |||||||| |||||||| |||||||| Sbjct 60 CATATTCTCCGCACTTTTTCTCATCTCCACCGCGACAGCCGCTACATTCGACATCCTAAA 119 Query 120 CCAATGTAGTTACACCGTGTGGGCTGCCGCAAGCCCTGGAGGTGGCCGACGTCTAGATGC 179 | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 120 CTGATGTAGTTACACCGTGTGGGCTGCCGCAAGCCCCGGAGGTGGCCGACGTCTAGATGC 179 Query 180 TGGCCAATCATGGAGGCTAGATGTCGCGGCGGGCACTAAAATGGCACGGATTTGGGGTAG 239 ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| | Sbjct 180 CGGCCAGTCATGGAGGCTAGATGTCGCGGCCGGCACTAAAATGGCACGTATTTGGGGTCG 239 Query 240 GACCAATTGTAACTTTGACTCCTCAGGTCGTGGCCGATGCCAAACTGGTGACTGCAGTGG 299 |||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 240 GACCAACTGTAACTTTGACTCCTCGGGCCGTGGCCGATGCCAAACTGGTGACTGCAGTGG 299 Query 300 TGGACTCCAATGTACTGGCTGGGGACAGCCACCAAACACGTTGGCTGAGTACGCTTTGAA 359 |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 300 TGGACTTCAATGTACTGGTTGGGGACAGCCACCAAACACGTTGGCTGAATACGCTTTGAA 359 Query 360 CCAATTCAACAACTTAGACTTCTACGATATCTCACTTGTCGATGGATTTAACATACCTAT 419 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 360 CCAATTCAACAACTTAGACTTCTACGACATCTCACTTGTCGATGGCTTTAACATTCCTAT 419 Query 420 GGAGTTTAGCCCAACTAGTTCGAACTGCCATCGGATACTATGTACCGCAGACATAAACGG 479 |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 420 GGAGTTTAGCCCAACTAGCTCGAACTGCCATCGGATATTATGTACCGCAGACATAAATGG 479 Query 480 ACAATGTCCAAACGTGTTGAGAGCCCCAGGTGGATGCAACAACCCGTGTACTGTATTTCA 539 ||| ||||| ||||| ||| ||||||||| |||||||||||||||||||| |||||||| Sbjct 480 ACAGTGTCCGAACGTACTGAAAGCCCCAGGCGGATGCAACAACCCGTGTACGGTATTTCA 539 Query 540 GACGAACCAATACTGTTGTACGAACGGTCAGGGATCATGTAGCGATACTGAGTACTCAAG 599 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 GACGAACCAATACTGTTGTACGAACGGTCAGGGATCATGTAGCGACACTGAGTACTCAAG 599 Query 600 ATTCTTTAAGCAGAGATGCCCTGACGCTTACAGCTATCCACAAGATGACCCGACTAGCAC 659 |||||| || |||||||| |||||||| ||||||||||||||||| |||||||| ||||| Sbjct 600 ATTCTTCAAACAGAGATGTCCTGACGCCTACAGCTATCCACAAGACGACCCGACCAGCAC 659 Query 660 TTTCACTTGCACCAACACTAACTACAGGGTCGTGTTTTGTCCAAG-GTCTAGGCTCGGTG 718 |||||||||||||||||||||||||||||||||||||||||| || | ||||| ||| || Sbjct 660 TTTCACTTGCACCAACACTAACTACAGGGTCGTGTTTTGTCCTAGAG-CTAGGGTCGCTG 718 Query 719 CTACTGGATCCCACCAGCTCCCGATCAAGATGGTCACCGAGGAGAATTAATAGACTCGTA 778 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| Sbjct 719 CTACTGGATCCCACCAGCTCCCGATCAAGATGGTCACAGAGGAGAATTATTAGACTGGTA 778 Query 779 TCTACTGTAtgtgtgtgtgtgtg 801 |||||||||| |||||||||||| Sbjct 779 TCTACTGTATATGTGTGTGTGTG 801 > Ahg943027 jgi|Araly1|943027|scaffold_603571.1 Length=714 Score = 791 bits (428), Expect = 0.0 Identities = 613/703 (87%), Gaps = 10/703 (1%) Strand=Plus/Plus Query 25 AACTAAAAAATGGCAAACCTCTTGGTCTCTACTTTCATATTTTCC-GCACTTTTGCTCAT 83 ||| |||||||||||||| ||| |||||| ||||| || ||| || |||| ||||| Sbjct 15 AAC-AAAAAATGGCAAACATCTCACACTCTACGTTCATGTTCTCCATCA-TTTTCCTCAT 72 Query 84 CTCCACCGCAACAGCCGCCACATTCGAAATCCTAAACCAATGTAGTTACACCGTGTGGGC 143 ||| ||||| || || ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 73 CTCAACCGCGACGGCTGCCACATTCGACATCCTAAACCGATGTAGTTACACCGTGTGGGC 132 Query 144 TGCCGCAAGCCCTGGAGGTGGCCGACGTCTAGATGCTGGCCAATCATGGAGGCTAGATGT 203 |||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| || Sbjct 133 TGCCGCAAGCCCCGGAGGTGGCCGGCGTCTTGATGCGGGCCAGTCATGGAGGCTAGACGT 192 Query 204 CGCGGCGGGCACTAAAATGGCACGGATTTGGGGTAGGACCAATTGTAACTTTGACTCCTC 263 ||| || || |||||||||||||||||||||||| ||||||| |||||||||||| |||| Sbjct 193 CGCAGCCGGTACTAAAATGGCACGGATTTGGGGTCGGACCAACTGTAACTTTGACCCCTC 252 Query 264 AGGTCGTGGCCGATGCCAAACTGGTGACTGCAGTGGTGGACTCCAATGTACTGGCTGGGG 323 || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 253 GGGACGTGGCCGATGCCAAACTGGTGACTGCAGTGGTGGACTTCAATGTACTGGTTGGGG 312 Query 324 ACAGCCACCAAACACGTTGGCTGAGTACGCTTTGAACCAATTCAACAACTTAGACTTCTA 383 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 313 ACAGCCACCAAACACGTTGGCTGAGTATGCTTTGAACCAGTTCAACAACTTAGACTTCTA 372 Query 384 CGATATCTCACTTGTCGATGGATTTAACATACCTATGGAGTTTAGCCCAACTAGTTCGAA 443 ||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 373 CGACATCTCACTTGTCGATGGATTTAACATTCCTATGGAGTTTAGCCCAACAAGCTCGAA 432 Query 444 CTGCCATCGGATAC-TATGTACCGCAGACATAAACGGACAATGTCCAAACGTGTTGAGAG 502 |||||| ||||| | |||| | ||| |||||||| ||||| ||||| || | ||||| || Sbjct 433 CTGCCACCGGAT-CGTATGCAACGCGGACATAAATGGACAGTGTCCGAATGAGTTGAAAG 491 Query 503 CCCCAGGTGGATGCAACAACCCGTGTACTGTATTTCAGACGAACCAATACTGTTGTACGA 562 |||| ||||| |||||||||||||| || || ||| ||||||| | || |||||||||| Sbjct 492 CCCCGGGTGGTTGCAACAACCCGTGCACGGTTTTTAAGACGAATGAGTATTGTTGTACGA 551 Query 563 ACGGTCAGGGATCATGTAGC-GATACTGAGTACTCAAGATTCTTTAAGCAGAGATG-CCC 620 |||| || || ||||||||| | |||| || |||||||||||| || ||||| || ||| Sbjct 552 ACGGGCAAGGTTCATGTAGCAGC-ACTGGGTTCTCAAGATTCTTCAAACAGAGGTGTCCC 610 Query 621 TGACGCTTACAGCTATCCACAAGATGACCCGACTAGCACTTTCACTTGCACCAACACTAA 680 ||||| ||||||||||||||||| |||||||| |||||||||||||| | |||||| Sbjct 611 -GACGCCTACAGCTATCCACAAGACGACCCGACCAGCACTTTCACTTGTAGTTCCACTAA 669 Query 681 CTACAGGGTCGTGTTTTGTCCA-AGGTCTAGGCTCGGTGCTAC 722 ||||||||| ||||||||||| ||| ||| ||||| |||||| Sbjct 670 CTACAGGGTGGTGTTTTGTCCTTAGGGCTAAGCTCGATGCTAC 712 > Ahg943024 jgi|Araly1|943024|scaffold_603568.1 Length=613 Score = 451 bits (244), Expect = 4e-126 Identities = 332/374 (89%), Gaps = 7/374 (2%) Strand=Plus/Plus Query 58 TTCATATTTTCCGCA-C-TTTTGCTCATCTCCACCGCAACAGCCGCCACATTCGAAATCC 115 |||||| |||| || | |||| |||||||||||||| || || ||||||||||| |||| Sbjct 51 TTCATA--TTCCCCATCATTTTCCTCATCTCCACCGCGACGGCTGCCACATTCGATATCC 108 Query 116 TAAACCAATGTAGTTACACCGTGTGGGCTGCCGCAAGCCCTGGAGGTGGCCGACGTCTAG 175 | |||| |||||| |||||||||||||| ||||| ||||| ||||||||||| |||||| Sbjct 109 TTAACCGATGTAGCTACACCGTGTGGGCCGCCGCTAGCCCCGGAGGTGGCCGTCGTCTAA 168 Query 176 ATGCTGGCCAATCATGGAGGCTAGATGTCGC-GGCGGGCACTAAAATGGCACGGATTTGG 234 || | ||||| |||||||||||||||||||| | |||| || ||||||||||| |||||| Sbjct 169 ATCCCGGCCAGTCATGGAGGCTAGATGTCGCTGCCGGG-ACAAAAATGGCACGTATTTGG 227 Query 235 GGTAGGACCAATTGTAACTTTGACTCCTCAGGTCGTGGCCGATGCCAAACTGGTGACTGC 294 ||| ||||||| ||||||||||||||||| || |||||||||||| |||| ||||||||| Sbjct 228 GGTCGGACCAACTGTAACTTTGACTCCTCGGGCCGTGGCCGATGCGAAACCGGTGACTGC 287 Query 295 AGTGGTGGACTCCAATGTACTGGCTGGGGACAGCCACCAAACACGTTGGCTGAGTACGCT 354 ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct 288 AGTGGTGGACTTCAATGTACTGGTTGGGGCCAGCCTCCAAACACGTTGGCTGAGTACGCT 347 Query 355 TTGAACCAATTCAACAACTTAGACTTCTACGATATCTCACTTGTCGATGGATTTAACATA 414 |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 348 TTGAACCAATACAATAACTTAGACTTCTACGACATCTCACTTGTCGATGGATTTAACATT 407 Query 415 CCTATGGAGTTTAG 428 || ||| ||||||| Sbjct 408 CCAATG-AGTTTAG 420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38656637838 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5