BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11660.1 Length=1991 Score E Sequences producing significant alignments: (Bits) Value Ahg943031 jgi|Araly1|943031|scaffold_603575.1 1823 0.0 Ahg327303 jgi|Araly1|327303|fgenesh1_pm.C_scaffold_6002523 270 2e-71 > Ahg943031 jgi|Araly1|943031|scaffold_603575.1 Length=1179 Score = 1823 bits (987), Expect = 0.0 Identities = 1112/1172 (95%), Gaps = 9/1172 (1%) Strand=Plus/Plus Query 365 GATCTATAACTCATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGC 424 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13 GATCTAAAACTCATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGA 72 Query 425 GGCGGTGGAGCTGGTTGTAGCGCCGGGAATagtggtggaagtagtggatgtggtgctggt 484 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73 GGCGGTGGAGCTGGTTGTAGCGCCGGGAATAGTGGTGGAAGTAGTGGATGTGGTGCTGGC 132 Query 485 ggtggcggtggtggtagtggtggaggtggtggCGGAGGAGGAGATTCACAGAGGTCAATT 544 || |||||||||||||||||||||||||| || |||||||||||||| |||||||||||| Sbjct 133 GGCGGCGGTGGTGGTAGTGGTGGAGGTGGCGGAGGAGGAGGAGATTCGCAGAGGTCAATT 192 Query 545 CCGACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTTTACGACGAATTG 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 193 CCGACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTTTACGACGAATTG 252 Query 605 ATCTCGTGGAACGAAGATGGAACCACTTTTATTGTGTGGCGACCAGCTGAATTCGCTAGA 664 || |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 253 ATATCGTGGAACGAAGATGGAACAACTTTTATTGTGTGGCGACCAGCTGAATTCGCCAGA 312 Query 665 GATCTTCTTCCCAAATACTTCAAACATAATAACTTCTCGAGTTTTGTTCGTCAGCTCAAT 724 |||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||| Sbjct 313 GATCTTCTTCCCAAATACTTCAAACACAACAATTTCTCTAGTTTTGTTCGTCAGCTCAAT 372 Query 725 ACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGATTGTTTTAAG 784 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 373 ACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGACTGTTTTAAG 432 Query 785 AGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATG 844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 433 AGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATG 492 Query 845 GCCGCGGCTGCTGCAGCGGCGGCGGCAGCCGTAGCGGCTTCGGCTGTTACAGTAGCAGCT 904 |||||||| |||||||||||||||||||| |||| ||||||||||||||| || ||||| Sbjct 493 GCCGCGGCCGCTGCAGCGGCGGCGGCAGCAGTAGTGGCTTCGGCTGTTACGGTGGCAGCG 552 Query 905 GTTCCTGTTGTAGCTCATATTGTTTCTCCATCGAACTCTGGAGAAGAACAGGTTATATCG 964 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 553 GTTCCTGTTGTAGCTCACGCTGTTTCTCCGTCGAACTCTGGAGAAGAACAGGTTATATCA 612 Query 965 TCTAATTCTTCGCCTGCGGCTGCTGCTGCTGCTATAGGAGGAGTGGTTGGTGGTGGTTCT 1024 ||||||||||||||||||||||| || ||||||||||||||||||||||||||| | || Sbjct 613 TCTAATTCTTCGCCTGCGGCTGCAGCCGCTGCTATAGGAGGAGTGGTTGGTGGT--T-CT 669 Query 1025 TTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATGAGCGATTG 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 670 TTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATGAGCGGTTG 729 Query 1085 AGGAAAGATAATGAGCGATTGAGGAAAGAGATGACAAAGCTTAAAGGATTGTATGCGAAT 1144 ||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||||| Sbjct 730 AGGAAAGATAATGAGCGATTGAGGAGAGAGTTGACAAAGTTTAAAGGATTATATGCGAAT 789 Query 1145 ATCTACACATTAATGGCGAATTTCACACCGGGTCAAGAAGATTGTGCGCATTTGTTACCT 1204 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 790 ATCTACACATTAATGGCGAATTTCACACCGGGTCGAGAAGATTGTGCGCATTTGTTAGCA 849 Query 1205 GAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGAGATGAGTGAAGCCATT--A-TG 1261 |||||||||||||||||||||||||||||||||||||| |||||||||||||| | || Sbjct 850 GAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGATATGAGTGAAGCCATGGCAATG 909 Query 1262 GCTTCT-GAAATAGAGACAGGGATTGGTCTGAAACTTGGTGAGGATTTGACTCCAAGGTT 1320 |||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||| ||||| Sbjct 910 GCTTCTAGAA-TAGAGACAGGGATTGGTTTGAAACTTGATGAGGATTTGACTCCGAGGTT 968 Query 1321 GTTTGGGGTTTCTATTGGGGTCAAGCGAGCTAGAAGAGAAGAAGAATTGGGTGCTGCAGA 1380 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 969 GTTTGGGGTTTCTATTGGGGTTAAGCGAGCTAGGAGAGAAGAAGAATTGGGTGCTGCAGG 1028 Query 1381 GGAAGAAGATGATGATAGACGAGAAGCTGCTGCCCAAGAGGGAGAACAAAGTTCTGATGT 1440 |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1029 GGAAGAGGATGATGATAGACGAGAAGCGGTTGCCCAAGAGGGAGAACAAAGTTCTGATGT 1088 Query 1441 TAAGGCAGAGCCAATGGAGGAGAATAACTCCGGTAACCATAATGGGTCGTGGCTTGAACT 1500 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1089 TAAGGCAGAGCCCATGGAGGAGAATAACTCCGCTAACCATAATGGGTCGTGGCTTGAACT 1148 Query 1501 CGGAAAATGAAAAACACTTGCCGATTCAGAGG 1532 ||||||||||||| ||||| ||| |||||||| Sbjct 1149 CGGAAAATGAAAA-CACTTACCGGTTCAGAGG 1179 > Ahg327303 jgi|Araly1|327303|fgenesh1_pm.C_scaffold_6002523 Length=2931 Score = 270 bits (146), Expect = 2e-71 Identities = 154/158 (97%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 1684 CTACCATCCTGAGTTGTTCCTGATTTCAGATGTTGCCTCCTGAATCTTCTTCTTGATGGA 1743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2931 CTACCATCCTGAGTTGTTCCTGATTTCAGATGTTGCCTCCTGAATCTTCTTCTTGATGGA 2872 Query 1744 ACTGAAACTATTCTGGCTTGCTGTGCTCCAGTGAGTGGATGTGCTTCTCACGATTTCGGA 1803 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 2871 ACTGAAACTATTCTGGCTTGTTGTGCTCCAGTGGGTGGATGTGCTTCTCACGATTTCGGA 2812 Query 1804 TAAAGCAGGCAGATTCAATGTTACATCTTCATATTCTG 1841 |||||||||||||||| |||||||||||||||| |||| Sbjct 2811 TAAAGCAGGCAGATTCGATGTTACATCTTCATACTCTG 2774 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74847331425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5