BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G11660.1

Length=1991
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943031 jgi|Araly1|943031|scaffold_603575.1                       1823    0.0  
  Ahg327303 jgi|Araly1|327303|fgenesh1_pm.C_scaffold_6002523           270    2e-71


> Ahg943031 jgi|Araly1|943031|scaffold_603575.1
Length=1179

 Score = 1823 bits (987),  Expect = 0.0
 Identities = 1112/1172 (95%), Gaps = 9/1172 (1%)
 Strand=Plus/Plus

Query  365   GATCTATAACTCATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGC  424
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  13    GATCTAAAACTCATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGA  72

Query  425   GGCGGTGGAGCTGGTTGTAGCGCCGGGAATagtggtggaagtagtggatgtggtgctggt  484
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  73    GGCGGTGGAGCTGGTTGTAGCGCCGGGAATAGTGGTGGAAGTAGTGGATGTGGTGCTGGC  132

Query  485   ggtggcggtggtggtagtggtggaggtggtggCGGAGGAGGAGATTCACAGAGGTCAATT  544
             || |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct  133   GGCGGCGGTGGTGGTAGTGGTGGAGGTGGCGGAGGAGGAGGAGATTCGCAGAGGTCAATT  192

Query  545   CCGACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTTTACGACGAATTG  604
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  193   CCGACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTTTACGACGAATTG  252

Query  605   ATCTCGTGGAACGAAGATGGAACCACTTTTATTGTGTGGCGACCAGCTGAATTCGCTAGA  664
             || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  253   ATATCGTGGAACGAAGATGGAACAACTTTTATTGTGTGGCGACCAGCTGAATTCGCCAGA  312

Query  665   GATCTTCTTCCCAAATACTTCAAACATAATAACTTCTCGAGTTTTGTTCGTCAGCTCAAT  724
             |||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct  313   GATCTTCTTCCCAAATACTTCAAACACAACAATTTCTCTAGTTTTGTTCGTCAGCTCAAT  372

Query  725   ACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGATTGTTTTAAG  784
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  373   ACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGACTGTTTTAAG  432

Query  785   AGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATG  844
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  433   AGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATG  492

Query  845   GCCGCGGCTGCTGCAGCGGCGGCGGCAGCCGTAGCGGCTTCGGCTGTTACAGTAGCAGCT  904
             |||||||| |||||||||||||||||||| |||| ||||||||||||||| || ||||| 
Sbjct  493   GCCGCGGCCGCTGCAGCGGCGGCGGCAGCAGTAGTGGCTTCGGCTGTTACGGTGGCAGCG  552

Query  905   GTTCCTGTTGTAGCTCATATTGTTTCTCCATCGAACTCTGGAGAAGAACAGGTTATATCG  964
             |||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||| 
Sbjct  553   GTTCCTGTTGTAGCTCACGCTGTTTCTCCGTCGAACTCTGGAGAAGAACAGGTTATATCA  612

Query  965   TCTAATTCTTCGCCTGCGGCTGCTGCTGCTGCTATAGGAGGAGTGGTTGGTGGTGGTTCT  1024
             ||||||||||||||||||||||| || |||||||||||||||||||||||||||  | ||
Sbjct  613   TCTAATTCTTCGCCTGCGGCTGCAGCCGCTGCTATAGGAGGAGTGGTTGGTGGT--T-CT  669

Query  1025  TTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATGAGCGATTG  1084
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  670   TTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATGAGCGGTTG  729

Query  1085  AGGAAAGATAATGAGCGATTGAGGAAAGAGATGACAAAGCTTAAAGGATTGTATGCGAAT  1144
             ||||||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||
Sbjct  730   AGGAAAGATAATGAGCGATTGAGGAGAGAGTTGACAAAGTTTAAAGGATTATATGCGAAT  789

Query  1145  ATCTACACATTAATGGCGAATTTCACACCGGGTCAAGAAGATTGTGCGCATTTGTTACCT  1204
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | 
Sbjct  790   ATCTACACATTAATGGCGAATTTCACACCGGGTCGAGAAGATTGTGCGCATTTGTTAGCA  849

Query  1205  GAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGAGATGAGTGAAGCCATT--A-TG  1261
             |||||||||||||||||||||||||||||||||||||| ||||||||||||||   | ||
Sbjct  850   GAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGATATGAGTGAAGCCATGGCAATG  909

Query  1262  GCTTCT-GAAATAGAGACAGGGATTGGTCTGAAACTTGGTGAGGATTTGACTCCAAGGTT  1320
             |||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct  910   GCTTCTAGAA-TAGAGACAGGGATTGGTTTGAAACTTGATGAGGATTTGACTCCGAGGTT  968

Query  1321  GTTTGGGGTTTCTATTGGGGTCAAGCGAGCTAGAAGAGAAGAAGAATTGGGTGCTGCAGA  1380
             ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| 
Sbjct  969   GTTTGGGGTTTCTATTGGGGTTAAGCGAGCTAGGAGAGAAGAAGAATTGGGTGCTGCAGG  1028

Query  1381  GGAAGAAGATGATGATAGACGAGAAGCTGCTGCCCAAGAGGGAGAACAAAGTTCTGATGT  1440
             |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  1029  GGAAGAGGATGATGATAGACGAGAAGCGGTTGCCCAAGAGGGAGAACAAAGTTCTGATGT  1088

Query  1441  TAAGGCAGAGCCAATGGAGGAGAATAACTCCGGTAACCATAATGGGTCGTGGCTTGAACT  1500
             |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1089  TAAGGCAGAGCCCATGGAGGAGAATAACTCCGCTAACCATAATGGGTCGTGGCTTGAACT  1148

Query  1501  CGGAAAATGAAAAACACTTGCCGATTCAGAGG  1532
             ||||||||||||| ||||| ||| ||||||||
Sbjct  1149  CGGAAAATGAAAA-CACTTACCGGTTCAGAGG  1179


> Ahg327303 jgi|Araly1|327303|fgenesh1_pm.C_scaffold_6002523
Length=2931

 Score =  270 bits (146),  Expect = 2e-71
 Identities = 154/158 (97%), Gaps = 0/158 (0%)
 Strand=Plus/Minus

Query  1684  CTACCATCCTGAGTTGTTCCTGATTTCAGATGTTGCCTCCTGAATCTTCTTCTTGATGGA  1743
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2931  CTACCATCCTGAGTTGTTCCTGATTTCAGATGTTGCCTCCTGAATCTTCTTCTTGATGGA  2872

Query  1744  ACTGAAACTATTCTGGCTTGCTGTGCTCCAGTGAGTGGATGTGCTTCTCACGATTTCGGA  1803
             |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct  2871  ACTGAAACTATTCTGGCTTGTTGTGCTCCAGTGGGTGGATGTGCTTCTCACGATTTCGGA  2812

Query  1804  TAAAGCAGGCAGATTCAATGTTACATCTTCATATTCTG  1841
             |||||||||||||||| |||||||||||||||| ||||
Sbjct  2811  TAAAGCAGGCAGATTCGATGTTACATCTTCATACTCTG  2774



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 74847331425


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5