BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11660.1
Length=1991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943031 jgi|Araly1|943031|scaffold_603575.1 1823 0.0
Ahg327303 jgi|Araly1|327303|fgenesh1_pm.C_scaffold_6002523 270 2e-71
> Ahg943031 jgi|Araly1|943031|scaffold_603575.1
Length=1179
Score = 1823 bits (987), Expect = 0.0
Identities = 1112/1172 (95%), Gaps = 9/1172 (1%)
Strand=Plus/Plus
Query 365 GATCTATAACTCATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGC 424
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 GATCTAAAACTCATGCCGGGGGAACAAACCGGAGAAACTCCGACGGTGGCCGGAGTTGGA 72
Query 425 GGCGGTGGAGCTGGTTGTAGCGCCGGGAATagtggtggaagtagtggatgtggtgctggt 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 GGCGGTGGAGCTGGTTGTAGCGCCGGGAATAGTGGTGGAAGTAGTGGATGTGGTGCTGGC 132
Query 485 ggtggcggtggtggtagtggtggaggtggtggCGGAGGAGGAGATTCACAGAGGTCAATT 544
|| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 133 GGCGGCGGTGGTGGTAGTGGTGGAGGTGGCGGAGGAGGAGGAGATTCGCAGAGGTCAATT 192
Query 545 CCGACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTTTACGACGAATTG 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CCGACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTTTACGACGAATTG 252
Query 605 ATCTCGTGGAACGAAGATGGAACCACTTTTATTGTGTGGCGACCAGCTGAATTCGCTAGA 664
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 253 ATATCGTGGAACGAAGATGGAACAACTTTTATTGTGTGGCGACCAGCTGAATTCGCCAGA 312
Query 665 GATCTTCTTCCCAAATACTTCAAACATAATAACTTCTCGAGTTTTGTTCGTCAGCTCAAT 724
|||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct 313 GATCTTCTTCCCAAATACTTCAAACACAACAATTTCTCTAGTTTTGTTCGTCAGCTCAAT 372
Query 725 ACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGATTGTTTTAAG 784
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 373 ACTTACGGATTTCGAAAAGTAGTTCCAGATCGTTGGGAGTTTTCTAATGACTGTTTTAAG 432
Query 785 AGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 AGAGGTGAGAAGATTCTGCTTCGGGATATTCAACGGCGGAAAATCTCTCAGCCTGCTATG 492
Query 845 GCCGCGGCTGCTGCAGCGGCGGCGGCAGCCGTAGCGGCTTCGGCTGTTACAGTAGCAGCT 904
|||||||| |||||||||||||||||||| |||| ||||||||||||||| || |||||
Sbjct 493 GCCGCGGCCGCTGCAGCGGCGGCGGCAGCAGTAGTGGCTTCGGCTGTTACGGTGGCAGCG 552
Query 905 GTTCCTGTTGTAGCTCATATTGTTTCTCCATCGAACTCTGGAGAAGAACAGGTTATATCG 964
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 553 GTTCCTGTTGTAGCTCACGCTGTTTCTCCGTCGAACTCTGGAGAAGAACAGGTTATATCA 612
Query 965 TCTAATTCTTCGCCTGCGGCTGCTGCTGCTGCTATAGGAGGAGTGGTTGGTGGTGGTTCT 1024
||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||
Sbjct 613 TCTAATTCTTCGCCTGCGGCTGCAGCCGCTGCTATAGGAGGAGTGGTTGGTGGT--T-CT 669
Query 1025 TTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATGAGCGATTG 1084
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 670 TTGCAGAGGACAACGAGCTGCACCACTGCACCAGAGCTGGTTGAGGAGAATGAGCGGTTG 729
Query 1085 AGGAAAGATAATGAGCGATTGAGGAAAGAGATGACAAAGCTTAAAGGATTGTATGCGAAT 1144
||||||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||
Sbjct 730 AGGAAAGATAATGAGCGATTGAGGAGAGAGTTGACAAAGTTTAAAGGATTATATGCGAAT 789
Query 1145 ATCTACACATTAATGGCGAATTTCACACCGGGTCAAGAAGATTGTGCGCATTTGTTACCT 1204
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 790 ATCTACACATTAATGGCGAATTTCACACCGGGTCGAGAAGATTGTGCGCATTTGTTAGCA 849
Query 1205 GAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGAGATGAGTGAAGCCATT--A-TG 1261
|||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 850 GAAGGGAAACCTTTAGATCTTTTACCGGAGAGACAAGATATGAGTGAAGCCATGGCAATG 909
Query 1262 GCTTCT-GAAATAGAGACAGGGATTGGTCTGAAACTTGGTGAGGATTTGACTCCAAGGTT 1320
|||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct 910 GCTTCTAGAA-TAGAGACAGGGATTGGTTTGAAACTTGATGAGGATTTGACTCCGAGGTT 968
Query 1321 GTTTGGGGTTTCTATTGGGGTCAAGCGAGCTAGAAGAGAAGAAGAATTGGGTGCTGCAGA 1380
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 969 GTTTGGGGTTTCTATTGGGGTTAAGCGAGCTAGGAGAGAAGAAGAATTGGGTGCTGCAGG 1028
Query 1381 GGAAGAAGATGATGATAGACGAGAAGCTGCTGCCCAAGAGGGAGAACAAAGTTCTGATGT 1440
|||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1029 GGAAGAGGATGATGATAGACGAGAAGCGGTTGCCCAAGAGGGAGAACAAAGTTCTGATGT 1088
Query 1441 TAAGGCAGAGCCAATGGAGGAGAATAACTCCGGTAACCATAATGGGTCGTGGCTTGAACT 1500
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1089 TAAGGCAGAGCCCATGGAGGAGAATAACTCCGCTAACCATAATGGGTCGTGGCTTGAACT 1148
Query 1501 CGGAAAATGAAAAACACTTGCCGATTCAGAGG 1532
||||||||||||| ||||| ||| ||||||||
Sbjct 1149 CGGAAAATGAAAA-CACTTACCGGTTCAGAGG 1179
> Ahg327303 jgi|Araly1|327303|fgenesh1_pm.C_scaffold_6002523
Length=2931
Score = 270 bits (146), Expect = 2e-71
Identities = 154/158 (97%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 1684 CTACCATCCTGAGTTGTTCCTGATTTCAGATGTTGCCTCCTGAATCTTCTTCTTGATGGA 1743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2931 CTACCATCCTGAGTTGTTCCTGATTTCAGATGTTGCCTCCTGAATCTTCTTCTTGATGGA 2872
Query 1744 ACTGAAACTATTCTGGCTTGCTGTGCTCCAGTGAGTGGATGTGCTTCTCACGATTTCGGA 1803
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2871 ACTGAAACTATTCTGGCTTGTTGTGCTCCAGTGGGTGGATGTGCTTCTCACGATTTCGGA 2812
Query 1804 TAAAGCAGGCAGATTCAATGTTACATCTTCATATTCTG 1841
|||||||||||||||| |||||||||||||||| ||||
Sbjct 2811 TAAAGCAGGCAGATTCGATGTTACATCTTCATACTCTG 2774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74847331425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5