BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11740.1 Length=2035 Score E Sequences producing significant alignments: (Bits) Value Ahg489990 jgi|Araly1|489990|fgenesh2_kg.6__3124__AT4G11740.1 2588 0.0 Ahg943680 jgi|Araly1|943680|scaffold_604224.1 73.1 7e-12 Ahg943059 jgi|Araly1|943059|scaffold_603603.1 73.1 7e-12 > Ahg489990 jgi|Araly1|489990|fgenesh2_kg.6__3124__AT4G11740.1 Length=1740 Score = 2588 bits (1401), Expect = 0.0 Identities = 1626/1731 (94%), Gaps = 30/1731 (2%) Strand=Plus/Plus Query 95 TATGGCGACACCGAATCAGGAAGCAATCGACACTTTCATCAGCATCACCGGCGCTTCTGA 154 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 1 TATGGCGACACCGAATCAGGAATCAATCGACACTTTCATCAGCATCACCGGCGCTTCAGA 60 Query 155 CGCCGTCGCCCTTCAGAAACTCGAGGAGCATCGTGGTGATCTTAATCAAGCAGTGAATGC 214 |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 61 GGCCGTCGCTCTTCAGAAACTCGAGGAACATCGTGGTGATCTTAATCAAGCTGTGAATGC 120 Query 215 ATATTTCAGCGAAGGAGATCGAAATGTAGTACGTGAAGCGCCGGTT-A-A----T-GATG 267 ||||||| |||| |||||||||||||||||| |||||||||||||| | | | | || Sbjct 121 ATATTTCGGCGAGGGAGATCGAAATGTAGTAAGTGAAGCGCCGGTTAATATTTCTCG-TG 179 Query 268 ATGATGAAATGGATATAGATGATGTGATTCCGGCTCCACAATCTCCTCTCTCTATGTTCA 327 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 180 ATGATGAAATGGATATAGATGATGTGATTCCGCCTCCACAATCTCCTCTATCTATGTTCA 239 Query 328 ATGCAGCTAGAACAATTGGCCGTCC-TCCCTTTTCGCTTTTGGATTCGGACTTTGCTAGA 386 ||||||||||||| | ||| | || ||||||||||||||||||||| |||||||||||| Sbjct 240 ATGCAGCTAGAACGA-TGG--G-CCATCCCTTTTCGCTTTTGGATTCAGACTTTGCTAGA 295 Query 387 CGTGTATTTGATAGCGATCCTCTTATGCCACGCCCTCCGTTTGTTAGTCATCCTAGAGAG 446 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 296 CGTGTATTTGATAGCGATCCTCTTATGCCACGCCCTCCGTTTGTTAGTTATCCCAGGGAG 355 Query 447 GTTAGGCAGATACCTATAGAGGTTAAGGATAGCAGTGGGCCATCTGGACGATCTAGTGAT 506 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 356 GTTAGGCAGATACCAATAGAGGTTAAGGATAGCAGTGGGCCATCAGGACGATCTAGTGAT 415 Query 507 GCTCCTACTATTGAAGATGTGACAGAAACAGCTCATGTTCAGGGTCCAGTAACTACCCAA 566 |||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||| Sbjct 416 GCTCCTACTATTGAAGATGTGACAGAAACAACACATGTTCAGGGTCCAG---CTACTCAA 472 Query 567 GGAACTGTTATTATTGATGAAGAGAGTGATGATGATATTCCTTTTGCACCAATGGGACGA 626 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 473 GGAACTGTTATTATAGATGAAGAGAGTGATGATGATATTCCTTTTGCTCCAATGGGACGA 532 Query 627 AGTAGGCAAGACAGACCTGCTGGTTCTGTAGCCAATAATAATAATCAAGATTACAATGAT 686 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 533 AGTAGGCAAGACAGACCTGCTGGTTCTGAAGCC---AATAATAATCAAGATTACAATGAT 589 Query 687 ATAGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGAAAGAGGCTGAGGGATCA 746 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 590 ATAGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGATGGAGGCTGAGGGATCA 649 Query 747 AGTAACCCTTTACTTGAAGAGAGGCCACTTCACATGGAAGATGATGATGACATAGCAATA 806 | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | Sbjct 650 AATAACCCTTTACTTGGAGAGAGGCCACCTCACATGGAAGATGATGATGACATAGCAAAA 709 Query 807 GCTGTTACAATGTCATTGAAGTCAGCGGAGGAAGAAGTTTTGCGCAGTCAAG-GGTATAA 865 |||||||| |||||| |||||||||| ||||||||||||||||||||||||| | | || Sbjct 710 GCTGTTACGATGTCACTGAAGTCAGCAGAGGAAGAAGTTTTGCGCAGTCAAGAGCT-TAT 768 Query 866 GGCCTCAACCTCGGAAATAGGAGCTTCTGCAGTGACTGCTGCTCAAGGACCTCAGGATAC 925 | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 769 GCCCTCAACCTCAGAAATAGGAGCTTCTGAAGTGACTGCTGCTCAAGGACCTCAGGATAC 828 Query 926 CCAGGCCCTGAACGGAAGATTGGCAGCACCTAGTTCACCATTTGATGATGACTCTGATGA 985 ||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 829 CCAAGCCCTGAATGGAAGATTGGCGGCACCTAGCTCACCATTTGATGATGACTCTGATGA 888 Query 986 TGTTGATGAGCAACCTCTTGTTAGACACAGGCCAAGACGTGCAGCATCCGGATCTCTGGC 1045 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 889 CGTTGATGAGCAACCTCTTGTTAGACACAGGCCAAGACGTGCAGCATCCGGATCTCTGGC 948 Query 1046 TCCACCTAACGCTGATCGTTCCCGGAGTGGGAGTCCTGAAGAAGAACATGCAAGTATTAA 1105 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 949 TCCACCTAACGCTGATCGTTCCCGGAGTGGGAGTCCTGAAGAAGAAGGTGCAAGTAGTAA 1008 Query 1106 TCCAGCGGAGCGTGGCAGTGGGTTTCCTTCTGAGTGGGGAGGCATTTCATCTGAGGAACA 1165 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1009 TCCACCGGAGCGTGGCAGTGGGTTTCCTTCTGAGTGGGGAGGCATTTCATCTGAGGAACA 1068 Query 1166 TGATGAAGCTGTCATGCTCGAGGCAGCCATGTTTGGTGGCATTCCTGAAACTGGATATAA 1225 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1069 TGATGAAGCTGTCATGCTTGAGGCAGCCATGTTTGGTGGCATTCCTGAAACTGGATATAA 1128 Query 1226 TCATCTTCCAT-TCTTACCTCCTCAGCCGAGGGCCCAACCACGTCCACCCTCACCTTCGC 1284 ||||||||||| | | ||||||||||||| |||| ||||| ||||||||||||||||| | Sbjct 1129 TCATCTTCCATATAT-ACCTCCTCAGCCGTGGGCACAACCCCGTCCACCCTCACCTTCAC 1187 Query 1285 TGACAGCTCAGAGGTTGATACGGGAACAGCAGGATGATGAGTATGTTGCGTCCCTGCAAG 1344 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1188 TGACAGCTCAGAGGTTGATACGGGAACAGCAGGATGATGAGTATGTTGCATCCCTGCAAG 1247 Query 1345 CTGACCGAGATAAAGAAATGAAGTCCATTAGAGATGCTGAGGCACGTCAGCTagaggaag 1404 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1248 CTGACCGAGATAAAGAAATGAAATCCATAAGAGATGCTGAGGCACGTCAGCTAGAGGAAG 1307 Query 1405 aaactgcgagaaaggcttttctggaggaagaaaagaaaaaagaggaagaagctcaaagaa 1464 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 AAACTGCTAGAAAGGCTTTTCTGGAGGAAGAAAAGAAAAAAGAGGAAGAAGCTCAAAGAA 1367 Query 1465 aactcgaggaggaacaggagctagaaagaCAACTAGATGCAAAAGAAGCGTCTTTACCTA 1524 ||||||||||||||||||||||||| || ||| |||| ||||||||||| ||| |||||| Sbjct 1368 AACTCGAGGAGGAACAGGAGCTAGATAGGCAATTAGACGCAAAAGAAGCTTCTCTACCTA 1427 Query 1525 AGGAGCCTCAAGCTGATGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATGGAA 1584 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1428 AGGAGCCTCAAGCAGACGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATGGCA 1487 Query 1585 CACGTCGGGGCCGCCGGTTCCTTAAATCTGACAAACTCCAAACCCTTTTCAACTTTATAG 1644 |||| || |||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 1488 CACGCCGTGGCCGCCGGTTCCTTAGATCTGACAAACTCCAATCCCTTTTCAACTTTATAG 1547 Query 1645 ACATTGCCAGAGTGGTGAAACCCAACACTTACAGACTGGTGAGGCCATATCCGAGGCATG 1704 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1548 ACATTGCCAGAGTGGTGAAACCCAACACTTATAGACTGGTGAGGCCATATCCGAGGCATG 1607 Query 1705 CGTTTGGAGATGGGGAAAGTGAGTCGAC-CTTAAACGATCTTGGATTGACCAGCAAACAA 1763 ||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1608 CGTTTGGAGATGGAGAAAGTGAGTCGACTCT-AAACGATCTTGGATTGACCAGCAAACAA 1666 Query 1764 GAAGCATTGTTCCTTGAGCTTATCT-AGT---TTTAA-GCTCTTAAATATA 1809 |||||||| |||||||||||||||| || ||||| | ||||||||||| Sbjct 1667 GAAGCATTATTCCTTGAGCTTATCTGAGCAAGTTTAAAGTTCTTAAATATA 1717 > Ahg943680 jgi|Araly1|943680|scaffold_604224.1 Length=1455 Score = 73.1 bits (39), Expect = 7e-12 Identities = 41/42 (98%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 689 AGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGAA 730 |||||||||||||||||||||||||||||||||||| ||||| Sbjct 589 AGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCGAAGAA 630 > Ahg943059 jgi|Araly1|943059|scaffold_603603.1 Length=193 Score = 73.1 bits (39), Expect = 7e-12 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 1708 TTGGAGATGGGGAAAGTGAGTCGACCTTAAACGATCTTG 1746 ||||||||||||||||||||||||||||||||||||||| Sbjct 155 TTGGAGATGGGGAAAGTGAGTCGACCTTAAACGATCTTG 193 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76523302205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5