BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G11860.1

Length=2344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490003 jgi|Araly1|490003|fgenesh2_kg.6__3137__AT4G11860.1        3578    0.0  


> Ahg490003 jgi|Araly1|490003|fgenesh2_kg.6__3137__AT4G11860.1
Length=2305

 Score = 3578 bits (1937),  Expect = 0.0
 Identities = 2191/2311 (95%), Gaps = 28/2311 (1%)
 Strand=Plus/Plus

Query  26    AAAAAATAAAATTTCTTCGGAATTTCCAATAATCTGTCTCTCTTCTTCTTCGATCGAAAA  85
             |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1     AAAAAAAAAAATTTCTTCGGAATTTCCAATAATCTGTCTCTCTTCTTCTTCGATCG-AAA  59

Query  86    TTTGACtttttttcgaatttgttttttCATTAGCTTTGGTTGATATCATCATCGTCAATG  145
             ||||||  ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct  60    TTTGAC--TTTTTCGAATTTGATTTTT-ATTAGCTTTGGTTGAGATCATCATCGTCAATG  116

Query  146   GCGACCGCTTCATCTTCAGAATCTCCGAGCGAAGAAACGCAGACGAATCAAGAAGCGATG  205
             |||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||
Sbjct  117   GCGACCGCTTCATCTTCAGAATATCCTAACGAAGAAACGCATACGAATCAAGAAGCGATG  176

Query  206   CAGCAGCAAGA--T-TTACCGAAGG-AA--AC---TACTACGGA-G--GAGGAGATTTTG  253
             |||||||||||  | || || |||| ||  ||   ||||||||| |  ||||||||||||
Sbjct  177   CAGCAGCAAGATTTGTTGCCAAAGGAAACTACTAATACTACGGAGGAAGAGGAGATTTTG  236

Query  254   TATAAGACGAAATCGATTCAGTTCCTTGGAAGAACCACACCTATCATTCTCCAGAACGAA  313
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  237   TATAAGACGAAATCGATTCAGTTCCTTGGACGAACCACACCTATCATTCTCCAGAACGAA  296

Query  314   AATGGACCTTGTCCTTTGTTAGCCATTTGTAATGTGCTTCTCTTGAGAAACAACTTGAAT  373
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct  297   AATGGACCTTGTCCTTTGTTAGCCATTTGTAATGTTCTTCTCTTGAGAAACAACTTGAAA  356

Query  374   CTAAATCCTGACTGTTATGAGGTTTCTCAAGAGAGATTGATGTCCCTCGTGGTCGACAGA  433
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  357   CTAAATCCTGACTGTTATGAGGTTTCTCAAGAGAGATTGATGTCCCTCGTGGTCGACAGA  416

Query  434   CTCATTGATTCCAATAGTAAAGTCAATAACAAAGATGAAGGATATATTGAGAATCAGCAA  493
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417   CTGATTGATTCCAATAGTAAAGTCAATAACAAAGATGAAGGATATATTGAGAATCAGCAA  476

Query  494   CAGAACATTGCTGATGCAATTGATCTTCTTCCACGCCTTACTACTGGAATTGATGTCAAT  553
             ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  477   CAGAACATTGCTGATGCAATTGATCTTCTTCCACGACTTACGACTGGAATTGATGTCAAT  536

Query  554   ATTAAATTCAGGAGGATTGATGATTTTGAGTTCACACCTGAATGTGCAATATTTGATTTA  613
             ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  537   ATTAAATTCAGGAGGATTGATGATTTTGAGTTCACCCCTGAGTGTGCAATATTTGATTTA  596

Query  614   CTTGACATTCCCTTATATCATGGATGGATAGTTGATCCTCAGGATGTTGAAGCAGCTAAT  673
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  597   CTTGACATTCCCTTATATCATGGATGGATAGTTGATCCCCAGGATGTTGAAGCAGCTAAT  656

Query  674   GCAATTGGTAGCAAATCGTATAATGCTCTTATGGGTGAGCTAGTTGCACTGGAGACACAG  733
             |||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct  657   GCAATTGGCAGCAAGTCGTATAATGCTCTAATGGGTGAGCTAGTTGCCCTGGAGACGCAG  716

Query  734   AATGTAGAGGCTCAAGGCGATCAAAATCCCGGAGAAGATTCTGTTGATTTTGCTGCGGCA  793
             ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  717   AATATAGAGGCTCAAGATGATCAAAATCCCGGAGAAGATTCTGTTGATTTTGCTGCGGCA  776

Query  794   ACTACTGCAGTTTTAGGGGTTCCTTCACCTTGTCTTTCGAAAACAAGATCTTTTGATGAT  853
             |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  777   ACTACTGCAGCTTTAGGGGTTCCTTCACCATGTCTTTCGAAAACAAGATCTTTTGATGAT  836

Query  854   TCTCCACCTGCGGCTGCAGAGCTTCGTAGAATGAGAAAGGGGGATCTTGAAGAAGAAACA  913
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  837   TCTCCACCTGCGGCTGCAGAGCTTCGCAGAATGAGAAAGGGGGATCTTGAAGAAGAAACA  896

Query  914   GAGTTGTTGCAAGCCTTGCAGTTATCACAGGGGCAGGGGAATGATCCAACTCCAAACACT  973
             ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct  897   GAGTTGTTGCAAGCCTTGCAGTTATCACAGGAGCAGGGGAATGATTCAATTCCAAACACT  956

Query  974   AACGGAGACTCAACCAATCAAGATTCTGCGTTCACATTTTCAGATGCGAGTCCAACTAGC  1033
             || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  957   AATGGAGACTCAACCAATCAAGACTCTGCGTTCACATTTTCAGATGCAAGTCCAACTAGC  1016

Query  1034  ACCCATATTACTAATATCAGTCAGCTAGACCAGTTCAAAACTGATGATGATAAAGCATCA  1093
             ||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct  1017  ACCCATGGTACTAATATCAGTCAGCTAGACCAGTTTAAATCTGATGATGATAAAGCATCA  1076

Query  1094  GAAAATGATGGGAATATGATCAAAGTTGGGAAATTTCCGACAACGATTACAACTAAAAGT  1153
             ||||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||||||
Sbjct  1077  GAAAATGATGGCAATATGATCAAAGTTGGGGAATTTCAGACACCGATTACAATTAAAAGT  1136

Query  1154  GAGGATCTTAACCATGATCAATTATCTTCTAAGCAATCTGGAGGTGAAACGGCTTGTGAT  1213
             |||||||| |||||||||||||||||||| |||||| |||||| ||||||||| ||||||
Sbjct  1137  GAGGATCTCAACCATGATCAATTATCTTCGAAGCAAACTGGAGTTGAAACGGCCTGTGAT  1196

Query  1214  GTTGAGAACGTGAGTAGCAGCAAAGAGGCCATTGTCGATGTAACTTCTTCTGAGGCACTC  1273
             |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct  1197  GTTGAGAACGTGAGTAGCAGTAAAAAGGCCATTGTCGATGTAACTTCTTCTGAGGCGCTC  1256

Query  1274  TCTGTGGATAAGGGTAATCTGGAGTCAGCGAAAAGTGAAAGCAGTTCTGAGAGTGTACTC  1333
             ||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct  1257  TCTGTGGATAAGGCTAATCTGGATTCAGCGAAAATTGAAAGCAGTTCTGAGAGTCTACTC  1316

Query  1334  AAGTCTGATGCAGCTTCTATTGATCCAGATTTGAGTTGCAGATCCCAGCATGATGATGCA  1393
             |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
Sbjct  1317  AAGTCTGATGCAGCTTCTGTTGATCCAGATTTTAGTTGCAGATCCCAGCATGACGATGTA  1376

Query  1394  CCCAACGCTTTTATCC-CACCTGTATCTACCGATGAACCTATGTACGAAGGTGAGGAATG  1452
             ||||| || |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1377  CCCAATGCGTTTA-CCTCACCTGTACCTACCGATGAACCTATGTACGAAGGTGAGGAATG  1435

Query  1453  TGTAAACACAGTGCCTCCAGTTTGTGCAGACAAAGAACCCGTTTATGAAGGTGAGTCACT  1512
             ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1436  TGTAAACACAGTGGCTCCAGTTTGTGCAGACAAAGAACCTGTTTATGAAGGTGAGTCACT  1495

Query  1513  TCTTGGTAAAAGGGTTGAGAAGGATGTTGGTGATTGTTCTTCTGAAGGGAGGGCTACGGA  1572
             ||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct  1496  TCTCGGTAAAAGGGTTGAGAAGGATGTGGGTGATTGTTCTTCTGAAGGAAAGGCTACGGA  1555

Query  1573  TGGGCTCACAGCAGAAGAAGGTGAACTAATCAGGAACTTTATGAAGAATAGTGCAAGTCA  1632
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1556  TGGGCTCACAGCAGAAGAAGGTGAACTAATCAGGAACTTTATGAAGAATAGTGCAAGTCA  1615

Query  1633  ATTAACCTTTTGTGGACTCTTTCGCTTGCAAGAAGGCCTCAAAGAACGTGAACTCTGTGt  1692
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1616  ATTAACCTTTTGTGGACTCTTTCGCTTGCAAGAAGGCCTTAAAGAACGTGAACTCTGTGT  1675

Query  1693  ttttttCCGGAACAATCATTTCTGCACCATGTTCAAGTATGAAGGTGAACTTTATCTTTT  1752
             ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1676  TTTCTTCCGCAACAATCATTTCTGCACCATGTTCAAGTATGAAGGTGAACTTTATCTTTT  1735

Query  1753  GGCTACAGATCAAGGTTACCTGAATCAGCCTGATTTGGTTTGGGAAAAACTAAACGAGGT  1812
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1736  GGCTACAGATCAAGGTTACCTGAATCAGCCTGATTTGGTTTGGGAAAAACTAAACGAGGT  1795

Query  1813  TAATGGTGACACTGCATTCATGACTGCTACCTTCAAGGACTTCACGATCGACAGCAGCAC  1872
             |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct  1796  TAATGGCGACACTGCATTCATGACTGCTACCTTCAAGGACTTCAAGATTGACAGCAGCAC  1855

Query  1873  AGGTGGTGCAAGTGGCACATGGGATGAACGAAACGCAGTCACAAATACTGCTGATTATCT  1932
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1856  AGGTGGCGCAAGTGGCACATGGGATGAACGAAACGCAGTCACAAATACTGCTGATTATCT  1915

Query  1933  TGCCAGCATCAACAATGTAGCGGATGCAGGCATAGATGTCAATTCTGATCTGCAACTAGC  1992
             ||||||||||||||||||||||||  ||| |||||||||||| |||||||| ||||||||
Sbjct  1916  TGCCAGCATCAACAATGTAGCGGACACAGACATAGATGTCAACTCTGATCTACAACTAGC  1975

Query  1993  AATAGCTTTGCAACAACAAGAGTTTGAGGACCAGAGCCCACGTAGTAACCCAACTCCACA  2052
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1976  AATAGCTTTGCAACAACAAGAGTTTGAGGACCAGAGCCCACGTAGCAACCCAACTCCACA  2035

Query  2053  ACCAACTAGCGTTGCTGCCTCACGATTGGTCACTGGTCCACAGGTACCAAGGAGCAGCCA  2112
             |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  2036  ACCAACAAGTGTTGCTACCTCACGATTGGTCACTGGTCCACAGGTACCAAGGAGCAGCCA  2095

Query  2113  CAGGCCATCATCAGCTGC-G--TCTTCGAGACACGACGGCAAATCCCCTAAAGATAAAGA  2169
             |||||||||||||||||| |  ||||||||||||||| |||||||||| |||||||||||
Sbjct  2096  CAGGCCATCATCAGCTGCAGCGTCTTCGAGACACGACAGCAAATCCCCAAAAGATAAAGA  2155

Query  2170  TAGCAAATGTAGAATCATGTAAATCCTCATTTCACTTATGTAAATTTCCAACTTTTTCTT  2229
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | 
Sbjct  2156  TAGCAAATGTAGAATCATGTAAATCTTCATTTCACTTATGTAAATTTCCAACTTTTTAT-  2214

Query  2230  ATTCCCTAACTAATTTTAATCCTT-AAAAGCTTTTTGGTTTTAACAAAAAA-----TAAA  2283
             | |||||||||||||||||||||| |||||| |||||||||||||||||||     ||||
Sbjct  2215  ACTCCCTAACTAATTTTAATCCTTTAAAAGCATTTTGGTTTTAACAAAAAAAAAACTAAA  2274

Query  2284  CTGTAATTGCGCTTTGACTAAACTATTTTTT  2314
             |||||||||||||||| ||||||||||||||
Sbjct  2275  CTGTAATTGCGCTTTGCCTAAACTATTTTTT  2305



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 88293187910


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5