BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11960.1 Length=1439 Score E Sequences producing significant alignments: (Bits) Value Ahg490014 jgi|Araly1|490014|fgenesh2_kg.6__3148__AT4G11960.1 1578 0.0 Ahg492575 jgi|Araly1|492575|fgenesh2_kg.7__2008__AT4G22890.3 869 0.0 > Ahg490014 jgi|Araly1|490014|fgenesh2_kg.6__3148__AT4G11960.1 Length=1157 Score = 1578 bits (854), Expect = 0.0 Identities = 1083/1187 (91%), Gaps = 41/1187 (3%) Strand=Plus/Plus Query 12 CATCACCATCTCAATTCTCAACCACACAAATCCAAAGCTTCTAACttttttttttGTTCT 71 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 4 CATCACCATCTCAATTCTCAACCACACAAATCCAAAGCTTCTAACTTTTTTTTTTCTTCT 63 Query 72 TCGTCCCGGACAAGAGAAAACAACGATCTCACTCAATCATCGGCGTGAGGGATAAAGACG 131 || | || | || ||||||||||||||||||||| | | ||| ||| Sbjct 64 TC-TTCC---C---AG---ACAACGATCTCACTCAATCAT---C-------A-AAA-ACG 101 Query 132 ATGGCTTTTACTCTAACAATCCCTAGATTTTCTGCAATTTCTCGCAAACCCATCACTTGT 191 ||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 102 ATGGCCTTTACTCTAACAATCCCCCGGCTTTCTACAATTTCTCGCAAACCCATCACTTGT 161 Query 192 TCTTCTTCGAGGACACAGTGTCCTGCTCCCTTTACCCATGGACGATCGATTTCTCTCAGA 251 |||||||| | | | | |||||| |||||| |||||||||||||||||||||||| Sbjct 162 TCTTCTTC---G--A-A--G-ACTGCTCACTTTACTCATGGACGATCGATTTCTCTCAGA 212 Query 252 CGAAGACTTAC-CTTATTGCCCCTTAAAGCTTCTACTGATCAATCAGGTCAGGTGGGTGG 310 |||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 213 AGAAGACTT-CTCTTATTGCCCCTTCAAGCTTCTACTGATCAATCAGGTCAGGTTGGTGG 271 Query 311 GGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCATCAACAAGAATGAGAAGAGAAC 370 ||||||||||||| |||||||||| || ||||||||||||||||||| |||||||||||| Sbjct 272 GGAAGAAGTTGATGGCAAGATTTTGCCATATTGTAGCATCAACAAGAGTGAGAAGAGAAC 331 Query 371 TATCGGTGAAATGGAACAAGAGTTCCTCCAAGCGATGCAATCGTTTTATTACGAAGGCAA 430 ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 332 AATCGGAGAAATGGAACAAGAGTTTCTCCAAGCCATGCAATCGTTCTATTACGAAGGCAA 391 Query 431 AGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTGATGTGGGAAGGAAG 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 392 AGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTGATGTGGGAAGGAAG 451 Query 491 CAGTGTTGTCATGCTAAGTTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGT 550 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 452 CAGTGTTGTTATGCTAAGTTCTGATGAACAAAGATTTCTTGAAGCTTCAATGGCTTATGT 511 Query 551 CTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGAT 610 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 512 CTCTGGAAACCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAATTGAAACTAAAGAT 571 Query 611 GGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGGTTTA 670 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 572 GGACGGAAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGGTTTA 631 Query 671 TAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGTTGAATGTACCAGCAACTGTTGT 730 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 632 CAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGTTGAATGTACCTGCAACTGTTGT 691 Query 731 TGCTCTCGGACTATTTTTCTTTCTTGATGACATTACTGGTTTTGAAATCACGTACCTGCT 790 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 692 TGCTCTCGGACTATTTTTCTTCCTTGATGACATTACGGGTTTTGAAATCACGTACCTGCT 751 Query 791 CGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGGTTCGCTGCGGTGCCTGCAATTGT 850 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 752 CGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGGTTTGCTGCGGTGCCTGCAATTGT 811 Query 851 ATATCTGGCGTTATCACTCACCAAACTGATCCTCAAAGACTTCTTGATCTTGAAGGGCCC 910 ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 812 CTATCTGGCGCTATCACTCACCAAACTCATCCTCAAAGACTTCTTGATCTTGAAGGGCCC 871 Query 911 TTGCCCAAACTGTGGAACAGAGAATGTATCTTTCTTTGGAACGATACTATCCATCCCCAA 970 ||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||| Sbjct 872 TTGTCCAAACTGTGGAACAGAGAATGTATCCTTCTTTGGAACAATACTTTCCATCTCCAA 931 Query 971 TGATAGTAACACCAACAATGTCAAATGCTCAGGCTGTGGAACGGAGATGGTCTATGACTC 1030 |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 932 TGATGGTAACACCAACAATGTCAAATGCTCTGGCTGTGGAACGGAGATGATCTATGACTC 991 Query 1031 AGGTTCTCGTTTGATCACATTACCAGAAGGAGGGAAAGCTTAAATC-TAAGAGCCAAGGG 1089 ||||||||||||||||||||||||||||||||| |||||||||| | || ||||||||| Sbjct 992 AGGTTCTCGTTTGATCACATTACCAGAAGGAGGCAAAGCTTAAAACCTATGAGCCAAGGC 1051 Query 1090 TTATGTAGAAGTGTATGTAAAATTAATACTAACAAATGAAGAAGGTGGAGAAATTGAAGA 1149 |||| ||| ||||||| |||| | |||||||| ||||| |||||||||||||| |||| Sbjct 1052 AAATGTGGAAATGTATGTTAAATGA-TACTAACAGATGAATAAGGTGGAGAAATTAAAGA 1110 Query 1150 AGAAGGAGAAAAACCAAAG--TTTGTATG----CTGTTTTGTATAAT 1190 | ||| |||| | | |||| ||||| || |||||||||||||| Sbjct 1111 AAAAGAAGAATATCAAAAGAGTTTGTTTGTGTTCTGTTTTGTATAAT 1157 > Ahg492575 jgi|Araly1|492575|fgenesh2_kg.7__2008__AT4G22890.3 Length=1221 Score = 869 bits (470), Expect = 0.0 Identities = 726/848 (86%), Gaps = 24/848 (3%) Strand=Plus/Plus Query 236 ATCGATTT-CTCTCAGACGAAGA--CTTACCTTATTGCC-CCTTAAAGCTTCTACTGATC 291 |||||||| || | ||| ||||| ||| ||| ||||| | |||||| | || || | Sbjct 209 ATCGATTTCCT-TGAGAAGAAGAGTCTT--CTTGTTGCCTGC-TAAAGCCACAACAGAGC 264 Query 292 AATCAGGT-CAGGTGGGTGGGGAAGAA-GTTGATAGCAA-GATTTTACCTTATTGTAGCA 348 |||||||| |||| ||| || | | || || |||||||| | |||| ||||||||||||| Sbjct 265 AATCAGGTACAGG-GGGAGGAG-ACAACGTCGATAGCAATG-TTTTGCCTTATTGTAGCA 321 Query 349 TCAACAAGAATGAGAAG-AGAACTATCGGTGAAATGGAACAAGAGTTCCTCCAAGCGATG 407 |||||||| ||||||| || || || |||||||||||||||||||| |||||||||||| Sbjct 322 TCAACAAGGCTGAGAAGAAG-ACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGATG 380 Query 408 CAATCGTTT-TATTACGAAGGCAAAGCGATTATGTCTAATGAAGAGTTTGATAACCTTAA 466 ||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 381 CAATC-TTTCTATTACGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAA 439 Query 467 AGAAGAGTTGATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAGATT 526 ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 440 AGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTTCCGATGAACAAAGGTT 499 Query 527 CCTTG-AAGCTTCAATGGCTTATGTCTCTGGAAATCCAATCTTGAGTGATGAAGAGTATG 585 | ||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||| Sbjct 500 C-TTGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATG 558 Query 586 ATAAGCTCAAAATGAAACTAAAGATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGAT 645 ||||||||||| ||||||||||||| || || || || |||||||| ||||||||||||| Sbjct 559 ATAAGCTCAAACTGAAACTAAAGATTGATGGTAGCGAAATTGTGTGCGAGGGTCCAAGAT 618 Query 646 GCAGTCTTCGTAGTAAAAAGGTTTATAGTGATCTTGCCATTGATTACTTCAAAATGTTCT 705 ||||||| |||||||||||||| ||||||||||| || | ||||| ||||||||||| | Sbjct 619 GCAGTCTCCGTAGTAAAAAGGTGTATAGTGATCTCGCTGTAGATTATTTCAAAATGTTAT 678 Query 706 TGTTGAATGTACCAGCAACTGTTGTTGCTCTCGGACTATTTTTCTTTCTTGATGACATTA 765 |||||||||| |||||||| ||||||||||||||||| |||||||| || || ||||||| Sbjct 679 TGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTCTTTTTCTTCCTCGACGACATTA 738 Query 766 CTGGTTTTGAAATCACGTACCTGC-TCGAGCTTCCGGAACCATTCAGTTTCATTTTCACA 824 | |||||||| ||||| ||| | | | |||||| ||||||||| ||||||||| ||||| Sbjct 739 CAGGTTTTGAGATCACATACAT-CATGGAGCTTTCGGAACCATACAGTTTCATATTCACG 797 Query 825 TGGTTCGCTGCGGTGCCTGCAATTGTATATCTGGCGTTATCACTCACCAAACTGATCCTC 884 ||||||||||| ||||||| |||||||||||||| |||||| |||||||||||||| || Sbjct 798 TGGTTCGCTGCCGTGCCTGTGATTGTATATCTGGCTTTATCAATCACCAAACTGATCATC 857 Query 885 AAAGACTTCTTGATCTTGAAGGGCCCTTGCCCAAACTGTGGAACAGAGAATGTATCTTTC 944 ||||||||||||||||||||||| ||||| || || |||||||| || || || ||| Sbjct 858 AAAGACTTCTTGATCTTGAAGGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTC 917 Query 945 TTTGGAACGATACTATCCATCCCCAATGATAGTAACACCAACAATGTCAAATGCTC-AGG 1003 |||||||| || || || ||| ||| || | | || |||||| |||||||||| | | Sbjct 918 TTTGGAACAATTCTGTCAATCTCCAGTGGTGGCAAAACCAACGCTGTCAAATGCACCAA- 976 Query 1004 CTGTGGAACGGAGATGGTCTATGACTCAGGTTCTCGTTTGATCACATTACCAGAAGGAGG 1063 ||||||||| | |||||| |||||||| |||||||| ||||||||||| ||||||||| | Sbjct 977 CTGTGGAACCGCGATGGTGTATGACTCGGGTTCTCGGTTGATCACATTGCCAGAAGGAAG 1036 Query 1064 GAAAGCTT 1071 |||||| Sbjct 1037 CCAAGCTT 1044 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53821516185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5