BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12000.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490019 jgi|Araly1|490019|fgenesh2_kg.6__3153__AT4G12000.1 1502 0.0
Ahg331419 jgi|Araly1|331419|fgenesh1_pm.C_scaffold_8000762 111 1e-23
Ahg326211 jgi|Araly1|326211|fgenesh1_pm.C_scaffold_6001431 111 1e-23
Ahg320712 jgi|Araly1|320712|fgenesh1_pm.C_scaffold_4000769 111 1e-23
> Ahg490019 jgi|Araly1|490019|fgenesh2_kg.6__3153__AT4G12000.1
Length=1221
Score = 1502 bits (813), Expect = 0.0
Identities = 1020/1115 (91%), Gaps = 34/1115 (3%)
Strand=Plus/Plus
Query 207 CTCGATGACTTATCACGAAGAAGACGATACAGTTTCTGAATTTCGAGTTAGAGTTGAAGA 266
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCGATGACTTATCACGAGGAAGACGATACAGTTTCTGAATTTCGAGTTAGAGTTGAAGA 132
Query 267 AGATGGAGTTGATAAATTAGGTCATTATGTTAAACTTACTGAAG-ATTTCGAAGTACATC 325
|||||||||||| |||||||| |||||||||||||||||||| | | | | | | ||||
Sbjct 133 AGATGGAGTTGAGAAATTAGGGCATTATGTTAAACTTACTGAGGAAGAT-G-A-TCCATC 189
Query 326 GACAAG-AAAC-AGAACAAGAATCTTCATCATCACCGTCTTCTTCTTCTTCATGTGGACA 383
|| | | | ||||| || || | |||||||||||||||||||||||
Sbjct 190 -AC-CGTCTTCTTCTTC-TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGTGGACA 246
Query 384 GAAACGATCTGTTTGGTTTTGGATCAAGCTTGGTCTTTTCTTCACTTTTCTAACTGCTTT 443
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 247 GAAACGATCTGTTTGGTTTTGGATCAAGCTTGGTCTTTTCTTAACATTTCTAACTGCTTT 306
Query 444 GGGTCTCGCTGGTTACAAATGGCTATAC-CCTTTAATCATGGATAAGGAGCTAATCCCAC 502
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 307 GGGTCTCGCTGGTTACAAATGGCT-CGCTCCTTTAATCATGGATAAGGAGCTAATCCCTC 365
Query 503 TCATAAAATGGGAGATGGAGACATTTACACACCCTGTGTGCGGTATTCTTGTGTTTGCAT 562
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 366 TCATTAAATGGGAGATGGAGACATTTACACACCCGGTGTGCGGTATTCTTGTGTTTGCAT 425
Query 563 CAGTCTCTTTATTCCCTGTGATACTTATTCCAACTACGCCGTCAATGTGGGTGGCTGGGA 622
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CAGTGTCATTATTCCCTGTGATACTTATTCCAACTACGCCGTCAATGTGGGTGGCTGGGA 485
Query 623 TTACATTTGGTTATTTCTATGGCCTTCTCCTTACTCTTCCAGCTGTAGCTATTGGTGTTT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TTACATTTGGTTATTTCTATGGCCTTCTCCTTACTCTTCCAGCTGTAGCTATTGGTGTTT 545
Query 683 CACTTCCTTACTTCATCAGCTATCTCTTCCTCAACAAAATTCAAGGTTGGTTAGAAAGAT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CACTTCCTTACTTCATCAGCTATCTCTTCCTCAACAAAATTCAAGGTTGGTTAGAAAGAT 605
Query 743 ATCCAGATCAAGCTGCAATGTTGAGAGCTGCTGGTGGAGGCAGTTGGTTTCATCAGTTTC 802
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 606 ATCCAGATCAAGCTGCAATGTTGAGAGCTGCTGGTGGAGGCAGTTGGTTTCACCAGTTTC 665
Query 803 GTGCAGTTACCTTAATCCGGATTTCTCCATTTCCTTTTGCTGTATATAATTACTGCGCTG 862
||||||| ||||||||||||||||||||||| |||||| || | ||||| ||||||||||
Sbjct 666 GTGCAGTAACCTTAATCCGGATTTCTCCATTCCCTTTTCCTCTTTATAACTACTGCGCTG 725
Query 863 TTGCAACTCGTGTGAAGTTCGGTCCTTACATGGCTGGTTCTCTCGTAGGCATGGCGCCGG 922
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 726 TTGCAACTCGTGTAAAGTTCGGTCCTTACATGGCTGGCTCTCTCGTAGGCATGGCGCCAG 785
Query 923 AGATTTT-TGTCGCAATTTATACAGGGATTCTTATAAGGACATTGGCAGATGCATCCACT 981
||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 786 AGATTTTCT-TCGCAATTTATACAGGGATTCTTATAAGGGCATTGGTAGATGCATCCACT 844
Query 982 GCGGAACAAAAGGGTCTCTCGATTCTTCAAATTGTTCTCAACATTTTTGGTTTTGTAGCA 1041
||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 845 GCGGAACAAGAGGGTCTCTCGATTCTTCAGATTGTTCTCAACATTCTTGGTTTTGTAGCA 904
Query 1042 ACTGTTGTGACAACTGTTCTCATCACTAAGTATGCGAAAAGACAGCTTGAAGTTATGAAG 1101
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 905 ACTGTTGTGACAACTGTTCTGATCACTAAGTATGCGAAAAGACAGCTTGAAGTTATGAAG 964
Query 1102 AAGGAGAAGGAAGCTTTGTTGTTACAGTAATGGAGACAACAACCTCAGAAGTTATGTCTC 1161
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 965 AAGGAGAAGGAAGCTTTGTTGTTACAGTAATGGAGACAACAACCTCGGAAGTTTTGTCTC 1024
Query 1162 TGCTTATTCCCAAAGTACAGGTTTTCGTCCATGATGTGAAAGAACTCTTGATTTTTGGTC 1221
|||||||| |||||||||||||||| ||||||||||||||| |||| | | |||| |||
Sbjct 1025 TGCTTATTACCAAAGTACAGGTTTT-GTCCATGATGTGAAAAAACT-T-G-TTTT-GGT- 1078
Query 1222 TCTGTTTTGGTTTGTTTATAGCCGAGAAATGAAAGGGTATAAAAGAAA--TTATAATGAC 1279
| ||| | | | | | |||||||||||||||| |||||||| ||||||||||
Sbjct 1079 T-TGTCAT--TACA---A-A-C-GAGAAATGAAAGGGTAGAAAAGAAAAATTATAATGAC 1129
Query 1280 TATATAAACACTAACTAAACTCTCTAACACGATTT 1314
|| | |||||| | | ||| |||||||||||||||
Sbjct 1130 TA-A-AAACAC-A-CAAAATTCTCTAACACGATTT 1160
> Ahg331419 jgi|Araly1|331419|fgenesh1_pm.C_scaffold_8000762
Length=180
Score = 111 bits (60), Expect = 1e-23
Identities = 77/85 (91%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 407 TCAAGCTTGGTCTTTTCTTCACTTTTCTAACTGCTTTGGGTCTCGCTGGTTACAAATGGC 466
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 5 TCAAGCTTGGTCTTTTCTTCGCGATTCTAACTGCTTTGGGTCTCGCTGGTTACAAATGGC 64
Query 467 TATAC-CCTTTAATCATGGATAAGG 490
| | |||| ||||||||||||||
Sbjct 65 TCG-CTCCTTCAATCATGGATAAGG 88
> Ahg326211 jgi|Araly1|326211|fgenesh1_pm.C_scaffold_6001431
Length=180
Score = 111 bits (60), Expect = 1e-23
Identities = 77/85 (91%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 407 TCAAGCTTGGTCTTTTCTTCACTTTTCTAACTGCTTTGGGTCTCGCTGGTTACAAATGGC 466
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 5 TCAAGCTTGGTCTTTTCTTCGCGATTCTAACTGCTTTGGGTCTCGCTGGTTACAAATGGC 64
Query 467 TATAC-CCTTTAATCATGGATAAGG 490
| | |||| ||||||||||||||
Sbjct 65 TCG-CTCCTTCAATCATGGATAAGG 88
> Ahg320712 jgi|Araly1|320712|fgenesh1_pm.C_scaffold_4000769
Length=180
Score = 111 bits (60), Expect = 1e-23
Identities = 77/85 (91%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 407 TCAAGCTTGGTCTTTTCTTCACTTTTCTAACTGCTTTGGGTCTCGCTGGTTACAAATGGC 466
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 5 TCAAGCTTGGTCTTTTCTTCGCGATTCTAACTGCTTTGGGTCTCGCTGGTTACAAATGGC 64
Query 467 TATAC-CCTTTAATCATGGATAAGG 490
| | |||| ||||||||||||||
Sbjct 65 TCG-CTCCTTCAATCATGGATAAGG 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5