BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12060.1 Length=1031 Score E Sequences producing significant alignments: (Bits) Value Ahg943103 jgi|Araly1|943103|scaffold_603647.1 1194 0.0 > Ahg943103 jgi|Araly1|943103|scaffold_603647.1 Length=776 Score = 1194 bits (646), Expect = 0.0 Identities = 737/779 (95%), Gaps = 13/779 (2%) Strand=Plus/Plus Query 24 ATCCAGACACACTCGCGAAAATGGCGGCTCACTCTTCTTGCAACTTTGCTTTGACGAATC 83 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCCAGACACATTCGCGAAAATGGCGGCTCACTCTTCTTGCAACTTTGCTTTGACGAATC 60 Query 84 CGATCATCTCACAAATCGATTCTTTCTCTAAGAAGAAACTATCTGTTCCATTATACTTCT 143 |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 61 CGATTATCTCACAAATCGATTCTTTCTCTAAGCAGAAACAATCTGTTCCATTATACTTCT 120 Query 144 TCTCTACAAG---------AAAAGCATTGACGAATCCTTGGTTAGGCGTTGTTGATTCAT 194 |||||||||| |||||| ||||||||||| |||||||||||||||||||||| Sbjct 121 TCTCTACAAGAAACCCTCTAAAAGCTTTGACGAATCCATGGTTAGGCGTTGTTGATTCAT 180 Query 195 CCCTCTCTCTCACTTCTCCAGTCTCCGCTCTACAAACTAATCGCCCAAGAAGAATCCATA 254 |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 181 CCCTCTCTCTCACTTCTCCAGTCTCCGCTCTACAAAGTACTCGCCGAAGAAGAATCCATA 240 Query 255 AATCCGCCATCTCCAGCTTACCCACCGCGAATCCAGATTTAGTGGTTTCTGATGCGAAAA 314 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 241 AATCCGTCATCTCCAGCTTACCCACCGCGAATCCAGATTTAGTGGTATCTGATGCGAAAA 300 Query 315 AGCCCAAATGGTCATGGAGGGCAATTAAATCATTTGCAATGGGAGAGCTTGAAGCTAGGA 374 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGCCCAAATGGTCATGGAGAGCAATTAAATCATTTGCAATGGGAGAGCTTGAAGCTAGGA 360 Query 375 AGCTCAAGTATCCAAATACTGGAACTGAAGCACTTCTCATGGGTATTTTGATTGAAGGAA 434 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGCTCAAGTATCCAAGTACTGGAACTGAAGCACTTCTCATGGGTATTTTGATTGAAGGAA 420 Query 435 CTAGTTTTACTTCAAAGTTTTTGCGGGCGAATAAGATTATGCTTTACAAAGTGCGTGAAG 494 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 421 CTAGTTTTACTTCAAAGTTTTTGCGGGCGAATAAGATAATGCTTTACAAAGTTCGTGAAG 480 Query 495 AAACGGTCAAGTTACTAGGAAAGGCAGATATGTATTTCTTTAGCCCGGAACATCCTCCTT 554 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 481 AAACGATCAAGTTACTAGGAAAGGCAGATATGTATTTCTTTAGCCCCGAACATCCTCCAT 540 Query 555 TAACTGAAGATGCTCAAAGAGCACTTGACTCTGCTCTGGATCAGAATCTAAAAGCAGGTG 614 |||| |||||||||||| ||||||||||||||||| | |||||||||| ||||||||||| Sbjct 541 TAACCGAAGATGCTCAACGAGCACTTGACTCTGCTGTTGATCAGAATCGAAAAGCAGGTG 600 Query 615 GTATCGGGGAAGTAATGCCAGCACATATACTACTTGGGATTTGGTCTGAAGTTGAATCTC 674 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 601 GTATCGGGGAAGTAATGCCAGCACATATACTACTGGGGATTTGGTCTGAAGTTGAATCTC 660 Query 675 CAGGTCACAAGATACTGGCAACTCTTGGTTTCACTGATGAGAAATCTAAAGAGTTAGAGT 734 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 661 CAGGTCACAAGATACTAGCAACTCTTGGTTTCACTGATGAAAAATCTAAAGAGTTAGAGT 720 Query 735 CTTTTGCCTCTGA-ATCTGGCTTTTTAGATGAATAGTATATTACATCCATATCATTTCT 792 |||||||||| || |||||| ||| |||||||||||| ||||||||| |||||||||| Sbjct 721 CTTTTGCCTC-GACATCTGGATTTCTAGATGAATAGTGTATTACATC--TATCATTTCT 776 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38351654502 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5