BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12130.1 Length=1517 Score E Sequences producing significant alignments: (Bits) Value Ahg490030 jgi|Araly1|490030|fgenesh2_kg.6__3164__AT4G12130.1 2165 0.0 > Ahg490030 jgi|Araly1|490030|fgenesh2_kg.6__3164__AT4G12130.1 Length=1415 Score = 2165 bits (1172), Expect = 0.0 Identities = 1330/1405 (95%), Gaps = 15/1405 (1%) Strand=Plus/Plus Query 9 GAAGAACGATACTAACAGAGCCTTCACAGAGAGATGTTTCGATTCAATTTCCGTCGTGAA 68 ||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1 GAAGAACAATACTAACAGAGCCTTCACA-AGAGATGTTTCGATTCAATTTTCGTCGTGAA 59 Query 69 ATCTCCAAATATACCGGAATTTATCACCGGAAGATACACAGCGGTCTAGAAGATGCCGGT 128 |||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 60 ATCTCCAAATCTACCGGAATTTATCACCGGAAAATCCACAGCGGTCTAGAAGATGCCGGT 119 Query 129 CCGATGGCGTCTCGCCTTAAATCACGTTCCGTTGTCCGGTTTAGCGGACCGGATACGGTT 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CCGATGGCGTCTCGCCTTAAATCACGTTCCGTTGTCCGGTTTAGCGGACCGGATACGGTT 179 Query 189 AAGTTTCTTCAAGGTTTGTTAACCAACGATGTACGGAGATTCGGCGAATCCTCCGGCGAG 248 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 180 AAGTTTCTTCAAGGTTTGTTAACCAACGATGTAAGAAGATTCGGCGAATCCTCCGGCGAG 239 Query 249 AAGAACTCGGCGGTTCCTACGCCGAACATGGCTTCCGTTACGAATCCGCCTATGTACGCA 308 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || Sbjct 240 AAGAACTCGGCGGTTCCTACGCCGAACATGGCTTCCGTTTCGACTCCGCCTATGTATGCG 299 Query 309 GCGTTGTTAACTCCTCAAGGAAGGTTTCTATACGATTTTTTCTTGTATAGCCCTTCGAGA 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 300 GCGTTGTTAACTCCTCAAGGAAGGTTTCTATACGATTTTTTCTTGTATAGCCCTTCGAAA 359 Query 369 CCCGATGAAAAGCTTGATCGGACTGGTTCAGGACCCGGGTCGGATTCGGGTCGTGATGGG 428 |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TCCGAGGAAAAGCTTAATCGGACTGGTTCAGGACCCGGGTCGGATTCGGGTCGTGATGGG 419 Query 429 TCTGTTGAGTTGTTTGCAGATGTTGATGTTGATGTCCTCGATGAATTGCTTGAAACTCTC 488 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TCGGTTGAGTTGTTTGCTGATGTTGATGTTGATGTCCTCGATGAATTGCTTGAAACTCTC 479 Query 489 AAAAAATATCGCTTGAGGTCCAAAGTGGATATTGAAAACGTTGCAGAGGAGTTTTCGTGT 548 ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 480 AAAAAGTATCGGTTGAGGTCCAAAGTGGATATTGAAAACGTTGCGGAGGAGTTTTCGTGT 539 Query 549 TGGCAGCGTTACGGTAGGAATCTTACTGGATCATCATCTGTTGGTTGGGGTGGTGGTGTT 608 |||||||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct 540 TGGCAGCGATACGGTAGGAATCTTTCTGGATCATCATCTGTCGGTTGGGGCGGTGGTGTT 599 Query 609 GATCGTGCTGGTGAGTCTACAGCTAGTGGTAATAAGTATGGATGGCAATGGTATAAGGAT 668 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GATCGTGCTGGTGAATCTACAGCTAGTGGTAATAAGTATGGATGGCAATGGTATAAGGAT 659 Query 669 CCGAGGTTGGAGTGTCTCGGTTACAGAAGTATCTTTCCGTCTGATGCAACTCCGCCTTTA 728 || |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 660 CCAAGGTTGGAATGTCTCGGTTACAGAAGCATCTTTCCGTCCGATGCAACCCCGCCTTTA 719 Query 729 GTTGAGGCAGATAAAGAAACAGATGAAAGCAATTATCTTTTATGGAGATTAGAGCATGGA 788 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 720 GTTGAGGCAGATAAAGAAACAGATGAAAGCAATTACCTTTTATGGAGATTAGAGCATGGA 779 Query 789 GTTGCTGAAGGATCAGCTGAAATTCCTAAAGGTGAAGCAATTCCGCTTGAATATAATTTC 848 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 780 GTTGCCGAAGGATCAGCTGAAATCCCTAAAGGTGAAGCAATTCCGCTTGAATATAATTTT 839 Query 849 GTTGGTCTTAATGCTATAAGCTTTGACAAAGGCTGCTATGTTGGTCAAGAGCTTATAGCT 908 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GTTGGTCTTAATGCGATAAGCTTTGACAAAGGCTGCTATGTTGGTCAAGAGCTTATAGCT 899 Query 909 CGTACCCATCACCGAGGTGTCATCCGCAAACGCTTAATCCCATTACGGTTTATCGATAGC 968 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 900 CGTACCCATCACCGAGGTGTCATCCGCAAACGCTTAATCCCATTACGATTCATCGATAGC 959 Query 969 AATGGAAAAGAGTTAAACCAGAAAATTGCGGCTGGAGCTGAAGTAGTAGAATCAGGAACG 1028 |||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 960 AATGGAAAAGAGGTAAACCAGAAAATCGCGGCTGGAGCTGAAGTAGTTGAATCAGGAACG 1019 Query 1029 GGCAAGAAAATGGGGACGGTTTCAACAGCTCTGGGTAGCCGGGGAATGGGTGTAATGAGG 1088 |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||| Sbjct 1020 GGCAAGAAAATGGGAACGGTTTCAACGGCTTTGGGTAGCCGAGGAATGGGTGTAATGAGG 1079 Query 1089 GTAGAGGAAGCCTTTAAACCATCAGCTGAATTAGCAGTAAAGGACTCAGAGGAGGTGAAA 1148 |||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 1080 GTAGAGGAAGCCCTTAAACCATCAGCTGAATTAACAGTAAAGGACTCAGAGGACGTGAAA 1139 Query 1149 GTCGAGGCAATCAAACCAACATGGTGGCCAGCTGAATGGTTCCAACAGAATCAATCAGGA 1208 ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1140 GTCGAGGCAATCAGACCAACATGGTGGCCAGCTGAGTGGTTTCAACAGAATCAATCAGGA 1199 Query 1209 GTTGCTGCAGCGTAGTAACTTACTAAGATTATTTTTGCAGTTGaaaaaaaTAAAGTTGGA 1268 ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| | Sbjct 1200 GTTGCTGCAGCCTAGTAACTTACTAAGATTATTTTTGCAGTTTAAAAAA-TAAAGTTGAA 1258 Query 1269 TACTTTCCGGCGAGGTTTCTGTACTGGAAAGCAACAAGCTCGTAGCTTTCATTGTATTCC 1328 |||||||||||||||| | | ||||||||||||| |||||||||||||||| Sbjct 1259 TACTTTCCGGCGAGGT------A----A--GCAACAAGCTCGTCGCTTTCATTGTATTCC 1306 Query 1329 ACTATTTAACTAATAAATGTTGGAACCTTCCGGCGAGTTTATAGCCGTCGGATAACTTTG 1388 ||| | |||||||||||||||||||||||||||||||||| |||||| ||||||| |||| Sbjct 1307 ACTGTCTAACTAATAAATGTTGGAACCTTCCGGCGAGTTT-TAGCCGCCGGATAATTTTG 1365 Query 1389 TACTAACTGCTACAAATTTTGTTGT 1413 |||||| |||||||||||| ||||| Sbjct 1366 TACTAATTGCTACAAATTTGGTTGT 1390 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56792555295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5