BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12290.1
Length=2420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943129 jgi|Araly1|943129|scaffold_603673.1 3367 0.0
Ahg352314 jgi|Araly1|352314|fgenesh1_pg.C_scaffold_6002907 1821 0.0
> Ahg943129 jgi|Araly1|943129|scaffold_603673.1
Length=2297
Score = 3367 bits (1823), Expect = 0.0
Identities = 2149/2302 (93%), Gaps = 40/2302 (2%)
Strand=Plus/Plus
Query 9 CAAAACaaaaaaaaaGTTGACATGGACCAAAAAAGCTTTTTCCGGTTGATTTTTCTCATA 68
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAACAAAAAAAAACCTGACATGGACCAAAAAAGCTTTTTCCGGTTGATTTTTCTCATA 60
Query 69 GTCACAGCTGGTTTCATCATCTCCTTCACTTCCACTAACTTCCCTCACGCG-C--CG--- 122
||||||||||||||||| ||||| || ||||||||| ||||| |||||||| | ||
Sbjct 61 GTCACAGCTGGTTTCATTATCTCTTTTACTTCCACTTACTTCTCTCACGCGACGTCGTCT 120
Query 123 ACGA---GGCTTCTTGATTGCACCGACTCTTCTTCTTCACCTCTTTGCGCTTCGAGAAAC 179
|||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ACGACGGGGATTCTTGATTGCACCGACTCTTCTTCTTCACCTCTTTGCGCTTCTAGAAAC 180
Query 180 TTTCTTTTCAACAAACAACAACCACGACCTATTCCTAAACATGATCCTAAACCAAATACC 239
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||
Sbjct 181 TTTCTTTTCAACAAACAACAACCACGTCCCATTCCTAAACACGATCCTAAACCAAAAACC 240
Query 240 AAAAACCATGATCACGTGTCCGATACACCAAACCATCCTCTAGACCCACTCACGGT-GTC 298
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 AAAAACCATGATCACGTCTCCGATACACCAAACCATCCTCTAGACCCACTCACGGTGGT- 299
Query 299 GGAGATTAACAAAATCCGATCAATACTC-TCTTCTCACGCGCTATTCACTTCCGGTACAC 357
||||||||||||| |||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 300 GGAGATTAACAAAGTCCGATCAATACTCAAC-TCTCACGCGCTATTCACCTCCGGTACAC 358
Query 358 CACACGCGCTCCACACCGTCGTTCTTGAAGAGCCTGAGAAGAATCTTGTCCGTCACTGGG 417
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 CACACGCGCTCCACACCGTCGTTCTTGAAGAGCCTGACAAGAATCTTGTCCGTCACTGGG 418
Query 418 AAAAAGGGAACCCACTTCCTCCGAGGAAAGCTTCCGTCATCGCACGTGTTGG-CGCGGAC 476
||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 419 AAAAAGGTAACCCACTTCCTCCGAGGAAAGCTTCCGTCATCGCACGTGTTGGCCTC-AAC 477
Query 477 ACGCACGTGCTCACCGTTGATATCTCTACGGGTCGGGTAGATTCAGAGAATAGCCCGGTT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACGCACGTGCTCACCGTTGATATCTCTACGGGTCGGGTAGATTCAGAGAATAGCCCGGTT 537
Query 537 CGTGTTTCTGGTTACCCGATGATGACTATAGAAGAGATGAACGATATCACTGTTGTACCA 596
||||||| |||||||||||||||||||| || |||||||||| ||| ||||||| |||
Sbjct 538 AGTGTTTCGGGTTACCCGATGATGACTATCGAGGAGATGAACGCTATGACTGTTGCACCG 597
Query 597 TTTTCAAACGCGGATTTCAACCGTACGATCATCTCTCGTGGAGTTAATCTAACGGACGTG 656
|| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 TTCGCAAACGCAGATTTCAACCGTACGATCATCTCTCGTGGAATTAATCTAACGGACGTG 657
Query 657 ATTTGTTTCCCAATCTCTTGTGGTTGGTTTGGTAATAAAGAAGAAAACGCGAGGGTAATT 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 ATTTGTTTCCCAATCTCTTGTGGTTGGTTTGGTAATAAAGAAGAAAACGCGAGGGTTATT 717
Query 717 AAAAGTCAGTGTTTCATGACACAAGGAACACCTAACTTCTACATGCGTCCTATCGAAGGT 776
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AAAAGTCAGTGTTTCTTGACACAAGGAACACCTAACTTCTACATGCGTCCTATCGAAGGT 777
Query 777 TTAACCATTCTCATCGATTTAGATACAAAGCAAGTGATCGAGATAACCGATACAGGTCGG 836
|||||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 778 TTAACCATCCTTGTCGATTTAGATACAAAGCAAGTGATCGAGATATCCGATACGGGTCGG 837
Query 837 GCTATACCCATACCCGGTTCAACCAATACCGATTACCGCTTCCAAAAGCTCGCAACCACC 896
|||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||
Sbjct 838 GCTATACCCATACCCGGTTCAACCAATACCGATTACCGCTTCGAAAAACTCGTGACCACC 897
Query 897 GACAAAA-CTCGGCCTCTAAACCCGATATCCATTGAGCAGCCACGTGGTCCAAGCTTCGT 955
||||||| | || | ||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 898 GACAAAAGC-CGACTTCTCAACCCCATATCCATCGAGCAGCCACGTGGTCCAAGCTTCGT 956
Query 956 GATAGAGGACAACCATCTAGTGAAATGGGCAAATTGGGAATTTCATCTAAAACCTGACCC 1015
|| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 957 AATCGAAGACAACCATCTAGTGAAATGGGCAAATTGGGAATTTCATCTAAAACCCGACCC 1016
Query 1016 GAGAGCAGGTGTGGTAATATCACGGGTAAGAGTACACGACCCGGATACTCATGAGACACG 1075
||||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 1017 GAGAGCAGGTGTGGTTATATCACTGGTCAGAGTACACGACCCGGATACTCAAGAGACACG 1076
Query 1076 TGACGTGATGTACAAA-GGTTTCGTGTCTGAACTTTTTGTTCCGTACATGGATCCATCGG 1134
|||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1077 TGACGTGATGTACAAAGGGTTT-GTGTCGGAGCTTTTTGTTCCGTACATGGATCCATCGG 1135
Query 1135 ACGCGTGGTACTTTAAGACTTACATGGACGCAGGGGAATACGGGTTCGGGTTACAAGCCA 1194
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ACGCGTGGTACTTCAAGACTTACATGGACGCAGGGGAATACGGGTTCGGGTTACAAGCCA 1195
Query 1195 TGCCACTCGTACCGCTTAATGATTGTCCACGAAACGCAGCCTATATGGACGGAGTTTTCG 1254
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1196 TGCCACTCGTACCACTTAATGATTGTCCACGAAACGCAGCATATATGGACGGAGTTTTCG 1255
Query 1255 CCGCAGCCGATGGAACACCGTTCGTGAGAGAAAACATGGTTTGTATCTTTGAGAGTTACG 1314
| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1256 CGGCGGCCGATGGAACACCGTTTGTGAGAGAAAACATGGTTTGTATCTTTGAGAGTTATG 1315
Query 1315 CCGGAGATATTGGGTGGCGTCACTCCGAAAGCCCCATCACCGGTATACCGATAAGGGAAG 1374
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1316 CCGGAGATATTGGGTGGCGTCACTCCGAAAGTCCCATCACCGGTATACCGATAAGGGAAG 1375
Query 1375 TGAGACCAAAAGTGACGCTAGTGGTACGAATGGCAGCTTCGGTAGGTAACTATGATTACA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TGAGACCAAAAGTGACGCTAGTGGTACGAATGGCAGCTTCGGTAGGTAACTATGATTACA 1435
Query 1435 TCATTGATTACGAGTTCCAAACTGATGGGCTTATAAAAGCTAAGGTCGGGCTAAGTGGAA 1494
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1436 TCATTGATTACGAGTTCCAAACTGATGGGCTTATAAAAGCTAAGGTTGGGCTCAGTGGAA 1495
Query 1495 TACTAATGGTGAAAGGGACAACATATCAAAACAAAAACCAAGTGGAGAAAGATAAAGACG 1554
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 1496 TACTAATGGTGAAAGGGACACCATATCAAAACAAGAACCAAGTGGAGAAAGATAAAGATG 1555
Query 1555 GTAATGAAGAAGAGCTTCACGGCACGCTTCTGTCTGAAAATGTAATTGGAGTAATACACG 1614
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 1556 GTAATGAAGAAGAGCTTCACGGCACGCTTCTGTCTGAAAATGTAATCGGAGTAATTCATG 1615
Query 1615 ATCACTACGTCACTTTTTACCTTGACCTTGACGTCGATGGCCCGGACAACTCATTTGTTA 1674
||||||||||||||||||||||||| || || |||||||||||||| || ||||||||||
Sbjct 1616 ATCACTACGTCACTTTTTACCTTGATCTCGATGTCGATGGCCCGGATAATTCATTTGTTA 1675
Query 1675 AAGTGAATCTCAAGAGGCAAGAGACCGAGCCAGGCGAGTCACCGAGGAAAAGTTACCTAA 1734
||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1676 AAGTGAACCTCAAGAGGCAAGAGACTGAGCCAGGTGAGTCACCGAGGAAAAGTTACCTGA 1735
Query 1735 AAGCTGTTAGGAACATTGCGAAAACCGAAAAGGATGGTCAGATCAAGCTTAGCTTGTACG 1794
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1736 AAGCTGTTAGGAACATTGCGAAAACCGAAAAAGATGGTCAGATCAAGCTAAGCTTGTATG 1795
Query 1795 ATCCATCAGAATTCCACGTCATCAACTCTGGTAAAACCACTCGGGTCGGAAACCCGACGG 1854
||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 1796 ATCCATCGGAATTCCACGTCATCAACTCTGGTAAATCTACTCGGGTCGGAAACCCAACGG 1855
Query 1855 GTTATAAGGTCGTTCCTAGAACGACGGCAGCTAGTCTACTTGACCATGATGATCCGCCGC 1914
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1856 GTTATAAGGTCGTTCCAAGAACTACGGCAGCTAGTCTACTTGACCATGATGATCCACCGC 1915
Query 1915 AGAAGAGAGGAGCTTTTACCAACAACCAAATTTGGGTCACTCCGTACAATAAGTCGGAGC 1974
||||||||||||||||||| || |||||||||||||| ||||| ||||||||||| ||||
Sbjct 1916 AGAAGAGAGGAGCTTTTACTAATAACCAAATTTGGGTTACTCCATACAATAAGTCCGAGC 1975
Query 1975 AATGGGCTGGTGGCTTGTTCACTTACCAAAGCCATGGTGATGACACTCTTGCAGTTTGG- 2033
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1976 AATGGGCTGGTGGCTTGTTCACTTACCAAAGCCATGGTGATGATACTCTTGCAGTTTGGG 2035
Query 2034 -TC-AGACA--G-G-----G-A--TAGA-G------ACATAGAGAACAAGGATATAGTTG 2073
| ||||| | | | | ||| | |||||||||||||||| |||||||
Sbjct 2036 ATAGAGACATAGAGAACAAGGACATAGTTGTGTGGTACATAGAGAACAAGGACATAGTTG 2095
Query 2074 TGTGGTATACACTTGGTTTCCATCACATTCCATGTCAAGAAGATTTTCCGATAATGCCCA 2133
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 TGTGGTACACACTTGGCTTCCATCACATTCCATGTCAAGAAGATTTTCCGATAATGCCCA 2155
Query 2134 CGGTTTCTTCGAGTTTCGATTTGAAGCCCGTAAACTTTTTCGAGCGCAATCCAATCCTCA 2193
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 2156 CGGTTTCTTCGAGTTTCGATTTGAAGCCCGTTAATTTTTTCGAGCGCAATCCAATCCTTA 2215
Query 2194 GTGCCGCTCCAAACTTTGAACATGATCTCCCGGTTTGTGGAGTTCAATCTGTTTCTGCTT 2253
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2216 GGGCCGCTCCAAACTTTGAACATGACCTCCCAGTTTGTGGAGTTCAATCTGTTTCTGCTT 2275
Query 2254 GAGAAGAGTAAAGTACGAAATA 2275
||||||||| |||||||||||
Sbjct 2276 GAGAAGAGTGGAGTACGAAATA 2297
> Ahg352314 jgi|Araly1|352314|fgenesh1_pg.C_scaffold_6002907
Length=1962
Score = 1821 bits (986), Expect = 0.0
Identities = 1663/1987 (84%), Gaps = 57/1987 (3%)
Strand=Plus/Plus
Query 299 GGAGATTAACAAAATCCGATCAATACTCTCTTCTCACGCGCTATTCACTTC-CGGTACAC 357
|||| | |||||| |||||||||| ||||| ||||||||||| ||||| || | || |||
Sbjct 3 GGAGCTCAACAAAGTCCGATCAATCCTCTCCTCTCACGCGCTCTTCACCTCAC-GTGCAC 61
Query 358 CACACGCGCTCCACACCGTCGTTCTTGAAGAGCCTGAGAAGAATCTTGTCCGTCACTGGG 417
||| | |||| || ||||||| ||||||||||| || ||||| || ||||| || ||||
Sbjct 62 CACTCACGCTTAACTCCGTCGTCCTTGAAGAGCCAGACAAGAACCTAGTCCGACAATGGG 121
Query 418 AAAAAGGGA-ACCCACTTCCTCCGAGGAAA-GCTTCCGTCATCGCACGTGTT-GGCGCG- 473
| ||| ||| ||| ||| || | | |||| ||||| || ||||||||| || || | |
Sbjct 122 ACAAA-GGAGACCAACTCCCAAC-AAGAAAGGCTTCTGTGATCGCACGT-TTAGGAG-GT 177
Query 474 GACACGCACGTGCTCACCGTTGA-TATCTCTACGGGTCGGGTAGATTCAGAGAATAGCCC 532
|| | |||||||| |||||||| | | ||||| || || |||| || | |||| ||
Sbjct 178 GATTCACACGTGCTTACCGTTGACT-TATCTACAAATCTTGTTGATTTAGTGGATAGTCC 236
Query 533 GGTTCGTGTTTCTGGTTACCCGA-TGATGACTAT-AGAAGAGATGAACGA-TATCACTG- 588
||||| | || |||||||||| || |||| | || |||||| || | | | |
Sbjct 237 GGTTCCTAAATCCGGTTACCCGATTG-TGAC-GTCGGAGGAGATGGAC-AGCGCCGC-GA 292
Query 589 TTGTACCATTTTCAAACGCGGATTTCAACCGTACGA-TCATCTCTCGTGGAGTTAATCTA 647
|| |||||| |||||||| |||||||||||||||| || | ||||||||| | ||||||
Sbjct 293 GTGCACCATTCTCAAACGCAGATTTCAACCGTACGATTC-TTTCTCGTGGAATAAATCTA 351
Query 648 ACGGACGTGATTTGTTTCCCAATCTCTTGTGGTTGGTTTGGTAATAAAGAAGAAAACGCG 707
||||||||| ||||| ||||||| ||| |||| |||||||||||||||||||| |||
Sbjct 352 ACGGACGTGGTTTGTATCCCAATGTCTAGTGGCTGGTTTGGTAATAAAGAAGACAACAAA 411
Query 708 AGGGTAATTAAAAGT-CAGTGTTTCATGA-CACAAGGAACACCTAACTTCTACATGCGTC 765
||||| | ||||| | ||||||||| | | | ||||| || ||||| ||||||||||| |
Sbjct 412 AGGGTGACTAAAA-TCCAGTGTTTC-TCATCTCAAGGTACTCCTAATTTCTACATGCGAC 469
Query 766 CTATCGAAGGTTTAAC-CATTCTCATCGATTTAGATACAAAGCAAGTGA-TCGAGATAAC 823
||||||||||||| || | | || | ||||||||||| |||||| | | | ||||||||
Sbjct 470 CTATCGAAGGTTTGACTC-TACTTTTTGATTTAGATACGAAGCAAAT-ACTTGAGATAAC 527
Query 824 CGATACAGGTCGGGCTATACCCATACCCGGTTCAACCAATACCGATTACCGCT--TCCAA 881
|||||| |||| | |||||||||||||||||||||||||||||||| || | ||| |
Sbjct 528 CGATACCGGTCAATCAATACCCATACCCGGTTCAACCAATACCGATTATCGATACTCC-A 586
Query 882 AAGCT-CGCAACCACCGACAAAACTC-GGCCTCTAAACCCGATATCCATTGAGCAGCCAC 939
| | || | ||| |||||||| | | ||||| || || || ||||| ||||||||||
Sbjct 587 ATTTTCCG-AGCCA-GGACAAAAC-CAGACCTCTCAATCCAATCTCCATCGAGCAGCCAC 643
Query 940 GTGGTCCAAGCTTCGTGATAGAGGACAACCATCTAGTGAAATGGGCAAATTGGGAATTTC 999
|||||||||||| || || ||||| |||||| |||| ||||||||||||||||||||||
Sbjct 644 ATGGTCCAAGCTTTGTAATCGAGGATAACCATATAGTAAAATGGGCAAATTGGGAATTTC 703
Query 1000 ATC-TAAAACCTGACCCGAGAGCAGGTGTGGTAATATCACGGGTAAGAGTACACGACCCG 1058
| | ||||||| ||||||||||| ||| || | ||||| ||||| |||||||| || |||
Sbjct 704 A-CTTAAAACCGGACCCGAGAGCCGGTCTGATTATATCCCGGGTCAGAGTACATGATCCG 762
Query 1059 GATACTCATGAGACACGTGACGTGATGTACAAAGGTTTCGTGTCTGAACTTTTTGTTCCG 1118
|||||| | ||||||||||| ||||||||||||||||||||||| || |||||| ||||
Sbjct 763 GATACTGAAGAGACACGTGAAGTGATGTACAAAGGTTTCGTGTCGGAGCTTTTTATTCCA 822
Query 1119 TACATGGATCCATCGGACGCGTGGTACTTTAAGACTTACATGGACGCAGGGGAATACGGG 1178
||||||||||||||||| || |||||||| |||||||||||||||||||| || ||||||
Sbjct 823 TACATGGATCCATCGGAAGCTTGGTACTTCAAGACTTACATGGACGCAGGAGAGTACGGG 882
Query 1179 TTCGGGTTACAAGCCATGCCACTCGTA-CCGCTTAATGATTGTCCACGAAACGCAGCCTA 1237
|| ||||||||| ||||| | |||| | |||||||| ||||||||| ||||||| | ||
Sbjct 883 TTGGGGTTACAAACCATGTCGCTCG-AGCCGCTTAACGATTGTCCAAGAAACGCCGTTTA 941
Query 1238 TATGGACGGAGTTTTCGCCGCAGCCGATGGAACACCGTTCGTGAGAGAAAACATGGTTTG 1297
|||||||||| | ||||| || || || ||||| ||||| |||||||| || ||| ||||
Sbjct 942 TATGGACGGAATATTCGCTGCGGCTGACGGAACGCCGTTTGTGAGAGAGAATATGATTTG 1001
Query 1298 TATCTTTGAGAGTTACGCCGGAGATATTGGGTGGCGTCACTCCGA-AAGCCCCATCACCG 1356
| | ||||||||||||||||||||||||| |||||||||| |||| | ||| || |||
Sbjct 1002 TGTGTTTGAGAGTTACGCCGGAGATATTGCGTGGCGTCACACCGAGTA-TCCCGTCCCCG 1060
Query 1357 GTAT---ACCGATAAGGGAAGTGAGACCAAAAGTGACGCTAGTGGTACGAATGGCAGCTT 1413
| || ||| || |||||||||||||||| |||||||| ||||||||||||| ||| |
Sbjct 1061 GCATGCCGCCGTTACGGGAAGTGAGACCAAAGGTGACGCTTGTGGTACGAATGGTAGCCT 1120
Query 1414 CGGTAGGTAACTATGATTACATCATTGATTACGAGTTCCAAACTGATGGGCTTATAAAAG 1473
| || |||||||| |||| |||||||||||| ||||||||||||||||||||||| | ||
Sbjct 1121 CAGTGGGTAACTACGATTTCATCATTGATTATGAGTTCCAAACTGATGGGCTTATGAGAG 1180
Query 1474 CTAAGGTCGGGCTAAGTGGAATAC-TAATGGTGAAAGGGACAACATATC-AAAACAAAAA 1531
| ||||| ||||| |||||||| | | ||||| ||||||||| | || | | ||||| ||
Sbjct 1181 CAAAGGTTGGGCTTAGTGGAAT-CTTGATGGTAAAAGGGACATCGTA-CGAGAACAAGAA 1238
Query 1532 CCAAGTGGAGAAAGATAAAGACGGTAATGAAGAAGAGCTTCACGGCACGCTTCTGTCTGA 1591
||||||| ||||||| ||||| |||||||||||||||||| | ||||| ||||||||||
Sbjct 1239 CCAAGTGAAGAAAGACAAAGAAGGTAATGAAGAAGAGCTTTATGGCACAATTCTGTCTGA 1298
Query 1592 AAATGTAATTGGAGTAATACACGATCACTACGTCACTTTTTACCTTGACCTTGACGTCGA 1651
||||||||||||||| || ||||| |||||||||||||||||| ||||||| ||||| ||
Sbjct 1299 AAATGTAATTGGAGTTATTCACGACCACTACGTCACTTTTTACTTTGACCTCGACGTTGA 1358
Query 1652 TGGCCCGGACAACTCATTTGTTAAAGTGAATCTCAAGAGGCAAGAGACCGAGCCAGGCGA 1711
||||||||| || || |||||||||||||| || |||||||||||||| | || ||| ||
Sbjct 1359 TGGCCCGGAAAATTCCTTTGTTAAAGTGAACCTTAAGAGGCAAGAGACGGCGCTAGGTGA 1418
Query 1712 GTCACCGAGGAAAAGTTACCTAAAAGCTGTTAGGAACATTGCGAAAACCGAAAAGGATGG 1771
||||| ||||| |||||| | ||||| ||||||||||||| ||||||||||||||| ||
Sbjct 1419 ATCACCTAGGAAGAGTTACATGAAAGCGGTTAGGAACATTGTGAAAACCGAAAAGGACGG 1478
Query 1772 TCAGATCAAGCTTAGCTTGTACGATCCATCAGAATTCCACGTCATCAACT-CTGGTAAAA 1830
| ||||||||||||||||||||||||||||||||| ||||||||| || | || ||||||
Sbjct 1479 TAAGATCAAGCTTAGCTTGTACGATCCATCAGAATACCACGTCATTAA-TCCTAGTAAAA 1537
Query 1831 CCACTCGGGTCGGAAACCCGACGGGTTATAAGGTCGTTCCTAGAACGACGGCAGCTAGTC 1890
|||||||||| || ||||||| |||||| ||| | || |||||| | || ||||| ||||
Sbjct 1538 CCACTCGGGTTGGTAACCCGAGGGGTTACAAGATTGTGCCTAGAGCCACAGCAGCAAGTC 1597
Query 1891 TACTTGACCATGATGATCCGCCGCAGAAGAGAGGAGCTTTTACCAACAACCAAATTTGGG 1950
| ||||||||||||||||| || |||||||||||||||||||| || |||||||||||||
Sbjct 1598 TGCTTGACCATGATGATCCACCACAGAAGAGAGGAGCTTTTACTAATAACCAAATTTGGG 1657
Query 1951 TCACTCCGTACAATAAGTCGGAGCAATGGGCTGGTGGCTTGTTCACTTACCAAAGCCATG 2010
| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1658 TTACTCCATACAATAAGTCCGAGCAATGGGCTGGTGGTTTGTTCACTTACCAAAGCCACG 1717
Query 2011 GTGATGACACTCTTGCAGTTTGGTCAGACAGGGATAGAGACATAGAGAACAAGGATATAG 2070
||||||| |||||||| |||||||| |||||||||||||| |||||||| || || || |
Sbjct 1718 GTGATGATACTCTTGCGGTTTGGTCCGACAGGGATAGAGATATAGAGAATAACGACATTG 1777
Query 2071 TTGTGTGGTATACACTTGGTTTCCATCACATTCCATGTCAAGAAGATTTTCCGATAATGC 2130
| |||||||| || || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 TGGTGTGGTACACGCTCGGGTTCCATCACATTCCATGTCAAGAAGATTTTCCGATAATGC 1837
Query 2131 CCACGGTTTCTTCGAGTTTCGATTTGAAGCCCGTAAACTTTTTCGAGCGCAATCCAATCC 2190
||||||||||||| ||||| ||||||||||||| ||| ||||||||||||| |||||| |
Sbjct 1838 CCACGGTTTCTTCAAGTTTTGATTTGAAGCCCGCAAATTTTTTCGAGCGCAGTCCAATTC 1897
Query 2191 TCA-GTGCCGCTCCAAACTTTGAACATGATCTCCCGGTTTGTGGAGTTCAA-TCTGTTTC 2248
| | | |||||||||||||||||| |||| || |||||||| |||| ||| ||||||||
Sbjct 1898 TTAAG-GCCGCTCCAAACTTTGAATATGACCTTCCGGTTTGCGGAGC-CAAATCTGTTTC 1955
Query 2249 TGCTTGA 2255
|||||||
Sbjct 1956 TGCTTGA 1962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91188046530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5