BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12320.1 Length=1740 Score E Sequences producing significant alignments: (Bits) Value Ahg490036 jgi|Araly1|490036|fgenesh2_kg.6__3170__AT4G12310.1 2296 0.0 Ahg327347 jgi|Araly1|327347|fgenesh1_pm.C_scaffold_6002567 1766 0.0 > Ahg490036 jgi|Araly1|490036|fgenesh2_kg.6__3170__AT4G12310.1 Length=1728 Score = 2296 bits (1243), Expect = 0.0 Identities = 1503/1629 (92%), Gaps = 15/1629 (1%) Strand=Plus/Plus Query 23 ATGTCTCCCATATCAAATCTCTTCGCTGGCAACAC-AATCAATCT-CACTCCTTACGCAA 80 ||||||| || |||||||||||| | | |||||| ||| | | | || |||||||||| Sbjct 1 ATGTCTCTGATTTCAAATCTCTTCACCGACAACACAAAT-ATTGTCCA-ACCTTACGCAA 58 Query 81 TTCTCATTCTCATTGCTATCTTCTCGATACT-ATGGTACCTCTTCAAACGCTCGCCGCAA 139 ||||| ||||||| |||||||||||| | || | |||||||||||||||||||||||||| Sbjct 59 TTCTCGTTCTCATCGCTATCTTCTCGGTTCTGA-GGTACCTCTTCAAACGCTCGCCGCAA 117 Query 140 CCGCATCTACCCCCTGGACCGCGAGGGCTACCTATTGTCGGAAACCTTCCCTTTCTTGAC 199 || | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 CCACCTCTACCGCCTGGACCGCGAGGGCTACCTATTGTCGGAAACCTTCCCTTTCTTGAC 177 Query 200 CCGGACCTTCACACCTACTTCACAAAACTTGCTGAAAGTTATGGTCCAATCTTCAAACTC 259 ||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||| Sbjct 178 CCGGACCTTCACACCTACTTCACAAAACTCGCTAAAAGTCATGGCCCAATCTTCAAACTC 237 Query 260 AATCTTGGCTCAAAACTAACTGTCGTGGTCAACACTCCATCGCTGGCTCGAGAGATCTTG 319 |||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||| Sbjct 238 AATCTTGGCTCAAAACTAACCGTCGTGGTCAACTCTCCATCGCTGGCTAGAGAGATCTTT 297 Query 320 AAAGATCAAGATATCAATTTCTCAAACCATGACGTCCCTCTCACAGCCCGAGCCGTTACC 379 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 298 AAAGATCAAGATATCAATTTCTCAAACCATGACGTCCCTCTCACGGCCCGAGCCGTTACC 357 Query 380 TATGGCGGTCTCGACCTTGTCTGGTTACCATACGGTGCTGAATGGAGGATGCTTAGGAAA 439 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct 358 TATGGCGGTCTCGACCTCGTTTGGTTACCATACGGTGCCGAATGGAGAATGCTTAGAAAA 417 Query 440 GTTTGCGTTCTTAAGCTTCTTAGCCACAGAACGTTGAATTCTTTCTACGAGCTTCGACGT 499 ||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 418 GTTTGCGTTCTCAAGCTTCTTAGCCGCAGAACGTTGGATTCTTTCTACGAGCTTCGACGT 477 Query 500 AAAGAAATCCGGGAAAGAACGAGATATTTGTACCAGAAAGGTCAAGAAGAATCACCGGTG 559 |||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| Sbjct 478 AAAGAAATCCGGGAAAGAACAAGATATTTGTACCAGCAAGGTCAAGAA---TCACCGGTG 534 Query 560 AATGTTGGAGAACAGGTCTTTTTGACGATGATGAATCTAACTATGAATATGTTATGGGGA 619 ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 535 AATGTTGGAGAGCAGGCCTTTTTGACGATGATGAATCTAACAATGAATATGTTATGGGGA 594 Query 620 GGTTCTGTGAAAGCAGAGGAAATGGAGAGTGTTGGAACAGAGTTTAAAGAAGTGATTTCT 679 ||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 595 GGTTCGGTTAAAGCAGAGGAAATGGAGAGTGTTGGAACAGAGTTTAAAGGAGTGATTTCT 654 Query 680 GAAATTA-CTAGGCTTTTGGGAGAGCCTAATGTTTCTGACTTTTTCCCACGGTTAGCGAG 738 ||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 655 GAAAT-AGCTAGGCTTTTGGGAGAGCCTAATGTTTCTGATTTTTTCCCATGGTTAGCGAG 713 Query 739 ATTCGATCTTCAAGGACTTGTGAAGAAGATGCATGTGTGTGCTCGGGAGCTCGATGCCAT 798 |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| || Sbjct 714 ATTCGATCTTCAAGGACTTGTGAAGAAGATGCATATGTATGCTCGAGAGCTCGATGCGAT 773 Query 799 ACTTGATCGAGCCATCGAGCAGATGCAACTACTAAGAACTAGGGATGGTGATGATGGTGA 858 ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| Sbjct 774 ACTTGATCGAGCCATCGAGCAGATGCATCGACTAAGAAGTAGGGATGGTGATGATGGTGA 833 Query 859 ATGTAAAGACTTTTTGCAACATTTGATGAAGTTAAAGGACCAAGAAGCTGACTCGGAGGT 918 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 834 ATGTAAAGACTTTTTGCAACATTTGATGAAGTTCAAGGACCAAGAAGCTGAGTCGGAGGT 893 Query 919 TCCCATTACGGTTAACCATGTCAAAGCCGTACTCGTGGATTTGGTGGTTGGTGGTACGGA 978 ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || Sbjct 894 TCCCATTACGGTTAACCATGTCAAAGCCGTACTTGTGGATATGGTAGTTGGTGGTACAGA 953 Query 979 TACATCGACCAACACAATAGAGTTTGCAATGGCCGAACTAATAAGAAAGCCGGAGTTGAT 1038 |||| | |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 954 TACAACAACCAACACGATAGAGTTTGCAATGGCAGAACTAATAAGAAACCCGGAGTTGAT 1013 Query 1039 GAAGAGAGCACAACAAGAGCTAGACGAAGTTGTAGGCAAAGATAACATTATTGAAGAATC 1098 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 1014 GAAGAGAGCACAACAAGAGCTAGACGAAGTTGTAGGCAAAGACAACATTGTTGAAGAATC 1073 Query 1099 ACACATCACTAGATTGCCTTTCATATCAGCCATAATGAAAGAAACACTTAGACTTTATCC 1158 |||||||||||||||||||||| ||| |||||| |||||||||||||||||||||| ||| Sbjct 1074 ACACATCACTAGATTGCCTTTCTTATTAGCCATTATGAAAGAAACACTTAGACTTTTTCC 1133 Query 1159 AACCATTCCCCTGCTAGTCCCTCACCGTCCGTCTGAAACCGCGCTGGTCGGCGGCTACAC 1218 ||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1134 AACCACTCCTCTGCTAGTCCCTCACCGTCCGTCCGAAACCGCACTGGTCGGCGGCTACAC 1193 Query 1219 CATCCCAAAAAACACTAAGATCTTCATCAATGTTTGGTCTATCCAGAGAGACCCAAATGT 1278 |||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||| Sbjct 1194 CATCCCTAAAAACACTAAAATCTTCATCAATGTTTGGGGTATTCAGAGAGACCCAAATGT 1253 Query 1279 GTGGGAGTATCCGACTGAGTTTCGTCCCGAGAGGTTTCTTGATAAGAAGTCTTGTGATTT 1338 ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1254 GTGGGAGAATCCGACTGAGTTTCTTCCCGAGAGGTTTCTTGATAAGAAGTCTTGTGATTT 1313 Query 1339 CACTGGAACTGATTATAGCTATCTTCCGTTTGGATCTGGCAGGAGAATTTGCGCAGGTAT 1398 ||||||||||||| |||||| |||||| ||||| || ||| |||||||||| | ||| | Sbjct 1314 CACTGGAACTGATCATAGCTTTCTTCCATTTGGGTCGGGCCGGAGAATTTGTGTTGGTGT 1373 Query 1399 AGCACTCGCCGAGAGGATGATTTTGTACACTCTCGCGACGCTATTGCATTCGTTTGATTG 1458 ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||||| Sbjct 1374 AGCACTCGCCGAGAGGATGGTTTTGTATACTCTCGCGACGCTATTGTATTCGTTCGATTG 1433 Query 1459 GAAGATACCGGAAGGCCACATTTTGGATTTGAAAGAGAAGTTTGGGATTGTCTTGAAGCT 1518 |||||| ||||| || ||| | ||||||||| |||||||||||||||||||||||||||| Sbjct 1434 GAAGATTCCGGATGGACACGTGTTGGATTTGGAAGAGAAGTTTGGGATTGTCTTGAAGCT 1493 Query 1519 CAAGTCCCCTCTTGTTGCCTTGCCCGTTCCGAGGTTGTCCAATTCGAATCTTTATTTATA 1578 |||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 1494 CAAGACCCCTCTTGTTGCCTTGCCCATTCCAAGGTTGTCCAATTCGAATCTTTATTTATA 1553 Query 1579 AACGCTATACTCGTTAC--TTTTCCTTaaaaaaaggaaaaaGATTTTTATATTGAACATT 1636 || || | | || ||| ||||| |||||||| ||||||||||| |||| ||| |||| Sbjct 1554 AAGGCAAAAATCTTTATAGTTTTC-TTAAAAAA-GGAAAAAGATTGTTATGTTGGCCATT 1611 Query 1637 TTTATGATA 1645 ||||||||| Sbjct 1612 TTTATGATA 1620 > Ahg327347 jgi|Araly1|327347|fgenesh1_pm.C_scaffold_6002567 Length=1557 Score = 1766 bits (956), Expect = 0.0 Identities = 1362/1560 (87%), Gaps = 20/1560 (1%) Strand=Plus/Plus Query 23 ATGTCTCCCATATCAAATCTCTTCGCTGGCAACACAATCAATCTCACTCCTTACGCAATT 82 |||||||| || |||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTCCGATTTCAAATCTCTTCCCCGACAACACAATCAATCTCACTCCTTACGCAATT 60 Query 83 CTCATTCTCATTGCTATCTTCTCGATACTATGGTACCTCTTCAAACGCTCGCCGCAACCG 142 |||| ||||| |||||||||||||| ||||||||| |||||||||||||| |||||||| Sbjct 61 CTCAGTCTCACCGCTATCTTCTCGATTCTATGGTACATCTTCAAACGCTCGACGCAACCG 120 Query 143 CATCTACCCCCTGGACCGCGAGGGCTACCTATTGTCGGAAACCTTCCC-TTTCTTGACCC 201 | |||||| |||||||| |||| |||||||| ||||| |||| |||| ||||||||||| Sbjct 121 CCTCTACCGCCTGGACCAAGAGGACTACCTATCGTCGGGAACC-TCCCGTTTCTTGACCC 179 Query 202 GGACCTTCACACCTACTTCACAAAACTTGCTGAAAGTTATGGTCCAATCTTCAAACTCAA 261 ||||||||||||||||||| |||| || ||| ||||| | ||||||||||| |||||||| Sbjct 180 GGACCTTCACACCTACTTCGCAAACCTCGCTCAAAGTCACGGTCCAATCTTTAAACTCAA 239 Query 262 TCTTGGCTCAAAACTAACTGTCGTGGTCAACACTCCATCGCTGGCTCGAGAGATCTTGAA 321 |||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||| Sbjct 240 TCTTGGCTCAAAACTAACCATCGTGGTCAACTCTCCAACTCTGGCTCGAGAGATCTTGAA 299 Query 322 AGATCAAGATATCAATTTCTCAAACC-ATGACGTCCCTCTCACAGCCCGAGCCGTTACCT 380 ||||||||| |||||||||||||||| | ||||| |||||||| | |||||||| ||||| Sbjct 300 AGATCAAGACATCAATTTCTCAAACCGA-GACGTACCTCTCACTGGCCGAGCCGCTACCT 358 Query 381 ATGGCGGTCTCGACCTTGTCTGGTTACCATACGGTGCTGAATGGAGGA-TGCTTAGGAAA 439 |||| ||| | ||| | || ||| |||||| || || ||||||| || ||||| ||| Sbjct 359 ATGGAGGTATAGACATCGTTTGGACACCATATGGCGCCGAATGGA-GACAACTTAGAAAA 417 Query 440 GTTTGCGTTCTTAAGCTTCTTAGCCACAGAACGTTGAATTCTTTCTACGAGCTTCGACGT 499 | ||||| || || || ||||||| || ||| ||| |||||||||||||||| ||||| Sbjct 418 ATATGCGTCCTCAAACTCCTTAGCCGCAAAACTTTGGATTCTTTCTACGAGCTCCGACGC 477 Query 500 AAAGAAATCCGGGAAAGAACGAGATATTTGTACCAGAAAGGTCAAGAAGAATCACCGGTG 559 |||||| |||||||||||||||||||| | ||| || |||||||| ||||||| ||||| Sbjct 478 AAAGAAGTCCGGGAAAGAACGAGATATCTATACGAGCAAGGTCAACAAGAATCCCCGGTT 537 Query 560 AATGTTGGAGAACAGGTCTTTTTGACGATGATGAATCTAACTATGAATATGTTATGGGGA 619 || |||||||| || | ||| ||||||||||||||||||| |||||||||||||||||| Sbjct 538 AAAGTTGGAGATCAATTGTTTCTGACGATGATGAATCTAACGATGAATATGTTATGGGGA 597 Query 620 GGTTCTGTGAAAGCAGAGGAAATGGAGAGTGTTGGAACAGAGTTTAAAGAAGTGATTTCT 679 || || |||||||||||||| |||||||||||||||| ||||||||| | ||| || ||| Sbjct 598 GGGTCGGTGAAAGCAGAGGAGATGGAGAGTGTTGGAAAAGAGTTTAAGGGAGTTATCTCT 657 Query 680 GAAATT-ACTAGG-CTTTTGGGAGAGCCTAATGTTTCTGACTTTTTCCCACGGTTAGCGA 737 | | || ||| || |||||| | |||||||||||||| |||||||| || || |||||| Sbjct 658 G-AGTTAACT-GGACTTTTGAGTGAGCCTAATGTTTCGGACTTTTTTCCGTGGCTAGCGA 715 Query 738 GATTCGATCTTCAAGGACTTGTGAAGAAGATGCATGTGTGTGCTCGG-GAGCTCGATGCC 796 |||| ||||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||| Sbjct 716 GATTTGATCTTCAAGGGCTTGTGAAGAGGATGCGTGTGTGTGC-CGGAGAGCTCGATGCG 774 Query 797 ATACTTGATCGAGCCATCGAGCAGATGCAACTACTAAGAACTAGGGATGGTGATGATGGT 856 |||||||| ||||||| ||||||||| ||| ||||| || |||| |||||||||| Sbjct 775 GTACTTGATAGAGCCATAGAGCAGATGAAACCGTTAAGAGGAAGAGATGATGATGATGGT 834 Query 857 GAATGTAAAGACTTTTTGCAACATTTGATGAAGTTAAAGGACCAAGAAGCTGACTCGGAG 916 ||||| |||||||| |||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 835 GAATGCAAAGACTTCTTGCAATATTTGATGAAGTTAAAGGACCAAGAAGGTGACTCGGAG 894 Query 917 GTTCCCATTACG-GTTAACCATGTCAAAGCCGTACTCGTGGATTTGGTGGTTGGTGGTAC 975 |||||||| | | |||| |||||||| ||||||||| |||| ||||||||||||| || Sbjct 895 GTTCCCATCA-GCATTAATCATGTCAAGGCCGTACTCACGGATATGGTGGTTGGTGGCAC 953 Query 976 GGATACATCGACCAACACAATAGAGTTTGCAATGGCCGAACTAATAAGAAAGCCGGAGTT 1035 || |||||||| ||||| ||||||||||| |||||||| ||||| || || |||||| | Sbjct 954 AGACACATCGACGAACACGATAGAGTTTGCGATGGCCGAGCTAATGAGCAACCCGGAGCT 1013 Query 1036 GATGAAGAGAGCACAACAAGAGCTAGACGAAGTTGTAGGCAAAGATAACATTATTGAAGA 1095 ||| || |||||||||||||||||||||||||||| ||||||||| |||||| ||||||| Sbjct 1014 GATAAAAAGAGCACAACAAGAGCTAGACGAAGTTGCAGGCAAAGACAACATTGTTGAAGA 1073 Query 1096 ATCACACATCACTAGA-TTGCCTTTCATATCAGCCATAATGAAAGAAACACTTAGACTTT 1154 |||||||||||| ||| || |||| ||||| |||||| ||||||||||||||||| ||| Sbjct 1074 ATCACACATCACAAGACTT-CCTTACATATTAGCCATTATGAAAGAAACACTTAGGCTTC 1132 Query 1155 ATCCAACCATTCCCCTGCTAGTCCCTCACCGTCCGTCTGAAA-C-CGCGCTGGTCGGCGG 1212 | |||||| |||| || |||||||||| |||||| |||||| | | || |||| ||||| Sbjct 1133 ACCCAACCCTTCCTTTGTTAGTCCCTCATCGTCCGGCTGAAAGCAC-CG-TGGTGGGCGG 1190 Query 1213 CTACACCATCCCAAAAAACACTAAGATCTTCATCAATGTTTGGTCTATCCAGAGAGACCC 1272 |||||| ||||| ||| |||||||||||||| |||||||||||||||| ||||||||||| Sbjct 1191 CTACACTATCCCTAAAGACACTAAGATCTTCGTCAATGTTTGGTCTATTCAGAGAGACCC 1250 Query 1273 AAATGTGTGGGAGTATCCGACTGAGTTTCGTCCCGAGAGGTTTCTTGATAAGAAGTCTTG 1332 ||||||||||||| |||| |||||||||||||| || |||||||||||||| || ||||| Sbjct 1251 AAATGTGTGGGAGAATCCAACTGAGTTTCGTCCTGAAAGGTTTCTTGATAACAACTCTTG 1310 Query 1333 TGATTTCACTGGAACTGATTATAGCTATCTTCCGTTTGGATCTGGCAGGAGAATTTGCGC 1392 ||||||||||||| | ||||||||||| |||| |||||||| ||||||||||||||||| Sbjct 1311 TGATTTCACTGGAGCCAATTATAGCTATTTTCCATTTGGATCGGGCAGGAGAATTTGCGC 1370 Query 1393 AGGTATAGCACTCGCCGAGAGGATGATTTTGTACACTCTCGCGACGCTATTGCATTCGTT 1452 ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 1371 CGGTATAGCACTAGCCGAGAGGATGGTTTTGTACACTCTCGCGACACTATTGCATTCGTT 1430 Query 1453 TGATTGGAAGATACCGGAAGGCCACATTTTGGATTTGAAAGAGAAGTTTGGGATTGTCTT 1512 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1431 CGATTGGAAGATACCGGAAGGCCACATTTTGGATTTGAAAGAGAAGTTTGGTATTGTCTT 1490 Query 1513 GAAGCTCAAGTCCCCTCTTGTTGCCTTGCCCGTTCCGAGGTTGTCCAATTCGAATCTTTA 1572 |||||||||| ||||||| |||||||||||| |||||||||||||| |||| |||||||| Sbjct 1491 GAAGCTCAAGACCCCTCTCGTTGCCTTGCCCATTCCGAGGTTGTCCGATTCAAATCTTTA 1550 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65286679930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5