BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12470.1 Length=799 Score E Sequences producing significant alignments: (Bits) Value Ahg490053 jgi|Araly1|490053|fgenesh2_kg.6__3187__AT4G12480.1 616 1e-175 Ahg943163 jgi|Araly1|943163|scaffold_603707.1 420 9e-117 Ahg943161 jgi|Araly1|943161|scaffold_603705.1 381 4e-105 > Ahg490053 jgi|Araly1|490053|fgenesh2_kg.6__3187__AT4G12480.1 Length=679 Score = 616 bits (333), Expect = 1e-175 Identities = 521/605 (86%), Gaps = 39/605 (6%) Strand=Plus/Plus Query 45 aaaaCAAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCGCTCAACATCCT 104 |||| |||||||||||||||||||||||||| ||||||||||||| || ||| ||||||| Sbjct 3 AAAA-AAATGGCTTCAAAGAACTCAGCCTCTATTGCTCTTTTCTTCGCCCTCGACATCCT 61 Query 105 CTTTTTCACCTTAACCGTTGCAAC--A----AATTG----CA-A---CT--G--C-AA-- 143 || ||||||||||| | |||||| | ||| || | || | | || Sbjct 62 ATTCTTCACCTTAACTGCTGCAACTGATTGTGGTTGCAACCAGAGTCCTAAGCACAAACC 121 Query 144 -G--CCAAGTCCTAAACCAAAGCCAGTCCCAAGTCCTAAGCCCAAGCCGGT-CCAATGTC 199 | || ||||||||||| |||||||||||||||||||| ||||||||||| |||| ||| Sbjct 122 GGTCCCTAGTCCTAAACCCAAGCCAGTCCCAAGTCCTAAACCCAAGCCGGTCCCAA-GTC 180 Query 200 C-TC-CTCCACCCCGTCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCCACG 257 | || ||| | | ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 181 CTTCGGTCC-CAAC-TCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCCAAG 238 Query 258 CACCCCTGGTTCATCCGGAAACAGCTGTCCTATTGATGCTCTCAAGCTCGGTGTATGTGC 317 ||||||| ||||||| |||||| || ||||| |||| ||||||||||||||||||||| Sbjct 239 CACCCCTAGTTCATCTGGAAACTGC---CCTATAGATGTTCTCAAGCTCGGTGTATGTGC 295 Query 318 AAATGTCTTAAGCAGTCTACTCAACATCCAGTTGGGACAGCCATCCTCTCAACAATGTTG 377 ||||||| ||||||||||||| |||||||||||||| |||||||| |||||| |||||| Sbjct 296 AAATGTCCTAAGCAGTCTACTTAACATCCAGTTGGGTCAGCCATCAGCTCAACCATGTTG 355 Query 378 CTCGCTCATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTATGCACTGCTCTGAG 437 |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 356 CTCGCTTATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTGTGCACTGCTCTTAG 415 Query 438 GGCTAACGTTCTTGGTATCAACCTTAACGTTCCGATATCTCTCAGCGTTCTTCTCAACGT 497 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 416 GGCTAACGTTCTTGGCATCAACCTTAACGTTCCAATATCTCTCAGCGTTCTTCTCAACGT 475 Query 498 TTGTAACAGAAAGCTTCCATCTGGTTTCCAATGTGCTTGAGCAATATCCAT-TATGCATA 556 ||||||||||||| |||| ||||||||||||||||||| | | ||||| | |||||||| Sbjct 476 TTGTAACAGAAAGGTTCCGTCTGGTTTCCAATGTGCTTAAACGATATC-AGCTATGCATA 534 Query 557 CGATGCGATGCCAGTGCACAATAT-CGTCTTCGAAATTTATTATAGTTTGAATAAATGCA 615 |||||||||||| || |||||||| | ||||| ||||| | || ||||||||||||| || Sbjct 535 CGATGCGATGCCCGTACACAATATAC-TCTTCAAAATT-ACTACAGTTTGAATAAATTCA 592 Query 616 TGTAA 620 ||||| Sbjct 593 TGTAA 597 Score = 84.2 bits (45), Expect = 1e-15 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 643 TAATTTGTTAAAGAGAAAAAATAAATGTGTGAGATTTTTATAGTTTTT 690 |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 600 TAATTTGTTAAAGATAAAAAATAAATGTGTGAGATTTTTATAGTTTTT 647 > Ahg943163 jgi|Araly1|943163|scaffold_603707.1 Length=495 Score = 420 bits (227), Expect = 9e-117 Identities = 423/511 (83%), Gaps = 39/511 (8%) Strand=Plus/Plus Query 37 TGaa-aaaaaaaaCAAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCGCT 95 |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 8 TGAAGAAAAATAAC-AATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCT 66 Query 96 CAACATCCTCTTTTTCACCTTAACCGTTGCAACAAATTGCAACTGCAAGCCAAGTCCTAA 155 ||||||||| |||||||||||||||||||| || |||| || ||||| ||||||||| | Sbjct 67 CAACATCCTTTTTTTCACCTTAACCGTTGCTACTGATTGTAAATGCAACCCAAGTCCT-A 125 Query 156 ACCAAAGCCAGTCCCAAGTCCTAAGCCCAAGCCGGTCCAATGTCCTCCTCCACCCCGTCC 215 | | | |||| || || | ||||| | ||| | | | | ||| ||| Sbjct 126 AGC--A--CAGT-CCTAG-GGT---CCCAA--C--TCCTA-G-GGT-C-CCA---ATTCC 165 Query 216 TTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCC-ACGCACCCCTGGTTCATCCG 274 ||| ||||||| | |||| ||||| || |||| | ||||||| || ||||| Sbjct 166 TTCGGTCCCAA---C---TCCT---TCGGTCCCAACTCCGA-GCACCCCAGGCTCATCTA 215 Query 275 GAAACAGCTGTCCTATTGATGCTCTCAAG-CTCGGTGTATGTGCAAATGTCTTAAGCAGT 333 | || | ||||||||| ||||||||| || ||||||||||||||||||||| ||||| || Sbjct 216 G-AA-A-CTGTCCTATCGATGCTCTC-AGACTCGGTGTATGTGCAAATGTCCTAAGCGGT 271 Query 334 CTACTCAACATCCAGTTGGGACAGCCATCCTCTCAACAATGTTGCTCGCTCATCCAAGGT 393 ||||| ||| | ||||||||||||||||| |||| | ||| |||||||||||||||||| Sbjct 272 CTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAGCCATGCTGCTCGCTCATCCAAGGT 331 Query 394 TTGGTTGACGTCGACGCTGCGATTTGTCTATGCACTGCTCTGAGGGCTAACGTTCTTGGT 453 ||||||||| |||||||||| ||||| || ||||||||||| |||||||||||||| ||| Sbjct 332 TTGGTTGACCTCGACGCTGCCATTTGCCTCTGCACTGCTCTTAGGGCTAACGTTCTCGGT 391 Query 454 ATCAACCTTAACGTTCCGATATCTCTCAGCGTTCTTCTCAACGTTTGTAACAGAAAGCTT 513 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 392 ATCAACCTTAACGTTCCTATATCTCTCAGCGTTCTTCTCAACGTTTGTAACAGAAGGCTT 451 Query 514 CCATCTGGTTTCCAATGTGCTTGAGCAATAT 544 || ||||| ||||||||||||||| | |||| Sbjct 452 CCGTCTGGCTTCCAATGTGCTTGAACGATAT 482 > Ahg943161 jgi|Araly1|943161|scaffold_603705.1 Length=608 Score = 381 bits (206), Expect = 4e-105 Identities = 281/316 (89%), Gaps = 9/316 (3%) Strand=Plus/Plus Query 244 GTCACACCTCC-ACGCACCCCTGGTTCATCCGGAAACAGCTGTCCTATTGATGCTCTCAA 302 ||||||||||| | |||||||||| |||| ||| || | |||||| || ||||||||| | Sbjct 298 GTCACACCTCCGA-GCACCCCTGGCTCAT-CGGGAA-A-CTGTCCCATCGATGCTCTC-A 352 Query 303 G-CTCGGTGTATGTGCAAATGTCTTAAGCAGTCTACTCAACATCCAGTTGGGACAGCCAT 361 | |||||||||||||| |||||| ||||| ||||||| ||| | |||||||||||||||| Sbjct 353 GACTCGGTGTATGTGCGAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCAT 412 Query 362 CCTCTCAACAATGTTGCTCGCTCATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTC 421 | |||| | ||| |||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 413 CAGCTCAGCCATGCTGCTCGCTCATCCAGGGTTTGGTTGACCTCGACGCTGCGATTTGTC 472 Query 422 TATGCACTGCTCTGAGGGCTAACGTTCTTGGTATCAACCTTAACGTTCCGATATCTCTCA 481 | ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 473 TCTGCACTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCCATATCTCTCA 532 Query 482 GCGTTCTTCTCAACGTTTGTAACAGAAAGCTTCCATCTGGTTTCCAATGTGCTTGAGCAA 541 ||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| Sbjct 533 GCGTTCTTCTCAACGTTTGTAACAGAAGGCTTCCGTCTGGTTTTCAATGTGCTTGAGCGG 592 Query 542 TATC-CATTATGCATA 556 |||| | ||||||||| Sbjct 593 TATCGC-TTATGCATA 607 Score = 180 bits (97), Expect = 2e-44 Identities = 163/192 (85%), Gaps = 15/192 (8%) Strand=Plus/Plus Query 47 aaCAAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCGCTCAACATCCTCT 106 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 24 AAC-AATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCTTT 82 Query 107 TTTTCACCTTAACCGTTGCAACAAATTGCA-ACTGCAAGCCAAGTCCTAAAC-CAAAGCC 164 ||||||||||||||| ||| || |||| | | ||||| ||||||||||| | ||| ||| Sbjct 83 TTTTCACCTTAACCGCTGCTACTGATTGTAGA-TGCAACCCAAGTCCTAAGCACAA-GCC 140 Query 165 -AGTCCCAAGTCCTAAGCCCAAGCCGGTCC-AATGTCCTCC--T-CCACCCCGTCCTTCA 219 | |||||||||||||||| | |||||||| || ||||| | | ||| | ||||||| Sbjct 141 GA-TCCCAAGTCCTAAGCCTAGGCCGGTCCCAA-GTCCTTCAGTTCCAAC---TCCTTCA 195 Query 220 GTCCCAAGTCCT 231 ||||||| |||| Sbjct 196 GTCCCAATTCCT 207 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29507137758 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5