BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12480.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490053 jgi|Araly1|490053|fgenesh2_kg.6__3187__AT4G12480.1 795 0.0
Ahg943161 jgi|Araly1|943161|scaffold_603705.1 424 7e-118
Ahg943163 jgi|Araly1|943163|scaffold_603707.1 399 1e-110
> Ahg490053 jgi|Araly1|490053|fgenesh2_kg.6__3187__AT4G12480.1
Length=679
Score = 795 bits (430), Expect = 0.0
Identities = 548/605 (91%), Gaps = 7/605 (1%)
Strand=Plus/Plus
Query 53 AGaaaaaaaTGGCTTCAAAGAACTCAGCCTCTATTGCTCTTTTCTTCGCCCTTAACATCA 112
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AGAAAAAAATGGCTTCAAAGAACTCAGCCTCTATTGCTCTTTTCTTCGCCCTCGACATCC 60
Query 113 TATTCTTCACCTTAACCGCTGCAACAGATTGTGGTTGCAACCCA-AGTCCTAAGCACAAG 171
|||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||
Sbjct 61 TATTCTTCACCTTAACTGCTGCAACTGATTGTGGTTGCAACC-AGAGTCCTAAGCACAAA 119
Query 172 CCTGTCCCAAGTCCTAAACCCAAGCCGGTCCCAAGTCCCAAACCCAAGCCGGTCCCAAGT 231
|| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 120 CCGGTCCCTAGTCCTAAACCCAAGCCAGTCCCAAGTCCTAAACCCAAGCCGGTCCCAAGT 179
Query 232 CCTTCAGTACCAAGTCCTTCGGTCCCAAGTCCTAACCCTAGGCCGGTCACGCCTCCGAGA 291
||||| || |||| |||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct 180 CCTTCGGTCCCAACTCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCTCCAAGC 239
Query 292 ACCCCTGGCTCATCTGGAAACTGTCCTATCGATGCTCTCA-GACTCGGTGTATGTGCGAA 350
|||||| | |||||||||||||| ||||| |||| ||||| | |||||||||||||| ||
Sbjct 240 ACCCCTAGTTCATCTGGAAACTGCCCTATAGATGTTCTCAAG-CTCGGTGTATGTGCAAA 298
Query 351 CGTTTTAAGCAGTCTACTCAACATTCAATTGGGTCAGCCATCAGCTCAACCATGTTGCTC 410
|| ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 299 TGTCCTAAGCAGTCTACTTAACATCCAGTTGGGTCAGCCATCAGCTCAACCATGTTGCTC 358
Query 411 GCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGTCTTTGCACTGCGCTTAGGGC 470
||| |||||||||||||||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct 359 GCTTATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTGTGCACTGCTCTTAGGGC 418
Query 471 TAACGTTCTTGGTATCAACCTTAACGTCCCGATATCTCTCAGTGTTCTTCTCAACGTTTG 530
|||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 419 TAACGTTCTTGGCATCAACCTTAACGTTCCAATATCTCTCAGCGTTCTTCTCAACGTTTG 478
Query 531 TAACAGAAAGGTTCCGTCTGGCTTCCAATGTGCTTGAAGGATATCAGCTATGCATACGAT 590
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 479 TAACAGAAAGGTTCCGTCTGGTTTCCAATGTGCTTAAACGATATCAGCTATGCATACGAT 538
Query 591 GTGATGCCCGTGCACAA-ATATCTTCTTCGAAATTGTTACAGTATGAATAAATGCATGTA 649
| ||||||||| ||||| ||| || |||| ||||| |||||| ||||||||| ||||||
Sbjct 539 GCGATGCCCGTACACAATATA-CT-CTTCAAAATTACTACAGTTTGAATAAATTCATGTA 596
Query 650 AGCTA 654
| |||
Sbjct 597 ATCTA 601
> Ahg943161 jgi|Araly1|943161|scaffold_603705.1
Length=608
Score = 424 bits (229), Expect = 7e-118
Identities = 327/373 (88%), Gaps = 11/373 (3%)
Strand=Plus/Plus
Query 221 CGGTCCCAAGTCCTTCAGTACCAAGTCCTTCGGTCCCAAGTCCTAAC---CCTAGGCCGG 277
||||||||| |||||| || |||| |||||||||||||| |||| | || | || |
Sbjct 239 CGGTCCCAACTCCTTCGGTCCCAACTCCTTCGGTCCCAAATCCTTCCGTACCAACTCCCG 298
Query 278 TCACGCCTCCGAGAACCCCTGGCTCATCTGGAAACTGTCCTATCGATGCTCTCAGACTCG 337
|||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 299 TCACACCTCCGAGCACCCCTGGCTCATCGGGAAACTGTCCCATCGATGCTCTCAGACTCG 358
Query 338 GTGTATGTGCGAACGTTTTAAGCAGTCTACTCAACATTCAATTGGGTCAGCCATCAGCTC 397
||||||||||||| || ||||| ||||||| ||| | || ||||| |||||||||||||
Sbjct 359 GTGTATGTGCGAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTC 418
Query 398 AACCATGTTGCTCGCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGTCTTTGCA 457
| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 419 AGCCATGCTGCTCGCTCATCCAGGGTTTGGTTGACCTCGACGCTGCGATTTGTCTCTGCA 478
Query 458 CTGCGCTTAGGGCTAACGTTCTTGGTATCAACCTTAACGT-CCCGATATCTCTCAGTGTT 516
|||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||
Sbjct 479 CTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCC-ATATCTCTCAGCGTT 537
Query 517 CTTCTCAACGTTTGTAACAGAAAGG-TTCCGTCTGGCTTCCAATGTGCTTGAA-GGATAT 574
|||||||||||||||||||||| || |||||||||| || |||||||||||| || |||
Sbjct 538 CTTCTCAACGTTTGTAACAGAA-GGCTTCCGTCTGGTTTTCAATGTGCTTGAGCGG-TAT 595
Query 575 CAGCT-ATGCATA 586
| ||| |||||||
Sbjct 596 C-GCTTATGCATA 607
> Ahg943163 jgi|Araly1|943163|scaffold_603707.1
Length=495
Score = 399 bits (216), Expect = 1e-110
Identities = 310/354 (88%), Gaps = 11/354 (3%)
Strand=Plus/Plus
Query 222 GGTCCCAAGTCCTTCAGTACCAAGTCCTTCGGTCCCAAGTCCTAACCCTAGGCCGGTCAC 281
|||||||| |||| || |||| |||||||||||||| || ||| ||||| |
Sbjct 139 GGTCCCAACTCCTAGGGTCCCAATTCCTTCGGTCCCAA---CT---CCT---TCGGTCCC 189
Query 282 GCCTCCGAGAACCCCTGGCTCATCTGGAAACTGTCCTATCGATGCTCTCAGACTCGGTGT 341
||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 190 AACTCCGAGCACCCCAGGCTCATCTAGAAACTGTCCTATCGATGCTCTCAGACTCGGTGT 249
Query 342 ATGTGCGAACGTTTTAAGCAGTCTACTCAACATTCAATTGGGTCAGCCATCAGCTCAACC 401
|||||| || || ||||| ||||||| ||| | || ||||| |||||||||||||| ||
Sbjct 250 ATGTGCAAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAGCC 309
Query 402 ATGTTGCTCGCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGTCTTTGCACTGC 461
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 310 ATGCTGCTCGCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGCCTCTGCACTGC 369
Query 462 GCTTAGGGCTAACGTTCTTGGTATCAACCTTAACGTCCCGATATCTCTCAGTGTTCTTCT 521
||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 370 TCTTAGGGCTAACGTTCTCGGTATCAACCTTAACGTTCCTATATCTCTCAGCGTTCTTCT 429
Query 522 CAACGTTTGTAACAGAAAGG-TTCCGTCTGGCTTCCAATGTGCTTGAAGGATAT 574
||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 430 CAACGTTTGTAACAGAA-GGCTTCCGTCTGGCTTCCAATGTGCTTGAACGATAT 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5