BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12490.1 Length=786 Score E Sequences producing significant alignments: (Bits) Value Ahg943161 jgi|Araly1|943161|scaffold_603705.1 702 0.0 Ahg490053 jgi|Araly1|490053|fgenesh2_kg.6__3187__AT4G12480.1 409 2e-113 Ahg943163 jgi|Araly1|943163|scaffold_603707.1 405 2e-112 > Ahg943161 jgi|Araly1|943161|scaffold_603705.1 Length=608 Score = 702 bits (380), Expect = 0.0 Identities = 529/599 (88%), Gaps = 18/599 (3%) Strand=Plus/Plus Query 2 TCTCTCACTCAAACATTCTCCATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTT 61 |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCTCTCTCAAACACACTCAATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTT 60 Query 62 TTCTTTGCCCTCAACATCCtttttttCACCTTAACCGCTGGTACTAATTGTAGATGCAAC 121 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 61 TTCTTTGCCCTCAACATCCTTTTTTTCACCTTAACCGCTGCTACTGATTGTAGATGCAAC 120 Query 122 CCGAGTCCTAAGC-CTAGGCCGCTCCCAAATCCT-A----A----GGTCCCAAGTCC-TA 170 || |||||||||| | | |||| |||||| |||| | | |||||||||||| | Sbjct 121 CCAAGTCCTAAGCAC-AAGCCGATCCCAAGTCCTAAGCCTAGGCCGGTCCCAAGTCCTTC 179 Query 171 AGGTCCCAACTCCTTCGGTCCCAAGTCCATATGTTCCAACTCCTTCGGTCCCAAGTCCTT 230 | || ||||||||||| ||||||| ||| | |||||||||||||| ||||||| ||||| Sbjct 180 A-GTTCCAACTCCTTCAGTCCCAATTCCTTCGGTTCCAACTCCTTCAGTCCCAATTCCTT 238 Query 231 CCGTACCAACTCCTTCGGTCCCAAGTCCTTCCGTACCAAGTCCTAAC---CCTACGCCAG 287 | || ||||||||||||||||||| |||||| || |||| |||| | || || || | Sbjct 239 CGGTCCCAACTCCTTCGGTCCCAACTCCTTCGGTCCCAAATCCTTCCGTACCAACTCCCG 298 Query 288 TCATTCCTCCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTCAGACTCG 347 ||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct 299 TCACACCTCCGAGCACCCCTGGCTCATCGGGAAACTGTCCCATCGATGCTCTCAGACTCG 358 Query 348 GTGTATGTGCGAATGTGCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCACCTC 407 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 359 GTGTATGTGCGAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTC 418 Query 408 AACCATGCTGCTCACTCATTCAAGGTTTGGTTGACCTTGACGCTGCGGTTTGCCTATGCA 467 | ||||||||||| ||||| || |||||||||||||| ||||||||| |||| || |||| Sbjct 419 AGCCATGCTGCTCGCTCATCCAGGGTTTGGTTGACCTCGACGCTGCGATTTGTCTCTGCA 478 Query 468 CTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTC 527 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 479 CTGCTCTTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCCATATCTCTCAGCGTTC 538 Query 528 TTCTCAACGTTTGCAACAGAAGGCTTCCGTCTAATTTCCAATGTGCTTGAG-GGATATC 585 ||||||||||||| |||||||||||||||||| ||| ||||||||||||| || |||| Sbjct 539 TTCTCAACGTTTGTAACAGAAGGCTTCCGTCTGGTTTTCAATGTGCTTGAGCGG-TATC 596 > Ahg490053 jgi|Araly1|490053|fgenesh2_kg.6__3187__AT4G12480.1 Length=679 Score = 409 bits (221), Expect = 2e-113 Identities = 360/425 (85%), Gaps = 17/425 (4%) Strand=Plus/Plus Query 236 CCAACTCCTTCGGTCCCAAGTCCTTCCGTACCAAGTCCTAACCCTACGCCAGTCATTCCT 295 |||| |||||||||||||| |||||| || ||||||||||| |||| ||| |||| ||| Sbjct 174 CCAAGTCCTTCGGTCCCAACTCCTTCAGTCCCAAGTCCTAATCCTAGGCCGGTCACACCT 233 Query 296 CCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTC-AGACTCGGTGTATG 354 || || |||||| ||||||| |||||||| ||||| |||| |||| || ||||||||||| Sbjct 234 CCAAGCACCCCTAGTTCATCTGGAAACTGCCCTATAGATGTTCTCAAG-CTCGGTGTATG 292 Query 355 TGCGAATGTGCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCACCTCAACCATG 414 ||| ||||| |||||| ||||||||||| | |||||||| ||||||||| |||||||||| Sbjct 293 TGCAAATGTCCTAAGCAGTCTACTTAACATCCAGTTGGGTCAGCCATCAGCTCAACCATG 352 Query 415 CTGCTCACTCATTCAAGGTTTGGTTGACCTTGACGCTGCGGTTTGCCTATGCACTGCTCT 474 ||||| || || ||||||||||||||| | ||||||||| |||| || ||||||||||| Sbjct 353 TTGCTCGCTTATCCAAGGTTTGGTTGACGTCGACGCTGCGATTTGTCTGTGCACTGCTCT 412 Query 475 TAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTCTTCTCAA 534 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 413 TAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCAATATCTCTCAGCGTTCTTCTCAA 472 Query 535 CGTTTGCAACAGAA-GGCTTCCGTCTAATTTCCAATGTGCTTGAGGGATATCAATTACAC 593 |||||| ||||||| || |||||||| |||||||||||||| | ||||||| || | Sbjct 473 CGTTTGTAACAGAAAGG-TTCCGTCTGGTTTCCAATGTGCTTAAACGATATCAGCTATGC 531 Query 594 ATACGA--CG---C----ACACAGTTTACTCTTTAAAATAA-TCACAGTTTGAATAA-TT 642 |||||| || | ||||| | ||||||| ||||| | | ||||||||||||| || Sbjct 532 ATACGATGCGATGCCCGTACACAATATACTCTTCAAAATTACT-ACAGTTTGAATAAATT 590 Query 643 GCATG 647 |||| Sbjct 591 -CATG 594 > Ahg943163 jgi|Araly1|943163|scaffold_603707.1 Length=495 Score = 405 bits (219), Expect = 2e-112 Identities = 267/291 (92%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 294 CTCCGAGAACCCCTGGTTCATCCGGAAACTGTCCTATCGATGCTCTCAGACTCGGTGTAT 353 ||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct 192 CTCCGAGCACCCCAGGCTCATCTAGAAACTGTCCTATCGATGCTCTCAGACTCGGTGTAT 251 Query 354 GTGCGAATGTGCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCACCTCAACCAT 413 |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 252 GTGCAAATGTCCTAAGCGGTCTACTTAACGTGCAGTTGGGACAGCCATCAGCTCAGCCAT 311 Query 414 GCTGCTCACTCATTCAAGGTTTGGTTGACCTTGACGCTGCGGTTTGCCTATGCACTGCTC 473 ||||||| ||||| ||||||||||||||||| |||||||| ||||||| |||||||||| Sbjct 312 GCTGCTCGCTCATCCAAGGTTTGGTTGACCTCGACGCTGCCATTTGCCTCTGCACTGCTC 371 Query 474 TTAGGGCTAACGTTCTTGGCATCAACCTTAACGTTCCTATATCTCTCAGTGTTCTTCTCA 533 |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| Sbjct 372 TTAGGGCTAACGTTCTCGGTATCAACCTTAACGTTCCTATATCTCTCAGCGTTCTTCTCA 431 Query 534 ACGTTTGCAACAGAAGGCTTCCGTCTAATTTCCAATGTGCTTGAGGGATAT 584 ||||||| |||||||||||||||||| ||||||||||||||| ||||| Sbjct 432 ACGTTTGTAACAGAAGGCTTCCGTCTGGCTTCCAATGTGCTTGAACGATAT 482 Score = 228 bits (123), Expect = 6e-59 Identities = 162/180 (90%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 23 ATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCtt 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17 ATAACAATGGCTTCAAAGAACTCAGCCTCTCTTGCTCTTTTCTTTGCCCTCAACATCCTT 76 Query 83 tttttCACCTTAACCGCTGGTACTAATTGTAGATGCAACCCGAGTCCTAAGC-CTAGGCC 141 |||||||||||||||| || |||| |||||| ||||||||| |||||||||| | || || Sbjct 77 TTTTTCACCTTAACCGTTGCTACTGATTGTAAATGCAACCCAAGTCCTAAGCAC-AGTCC 135 Query 142 --GC-TCCCAAATCCTAAGGTCCCAAGTCCTAAGGTCCCAACTCCTTCGGTCCCAAGTCC 198 | |||||| ||||| |||||||| |||| ||||||||||||||||||||||| ||| Sbjct 136 TAGGGTCCCAACTCCTAGGGTCCCAATTCCTTCGGTCCCAACTCCTTCGGTCCCAACTCC 195 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29011539837 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5