BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12700.1 Length=1940 Score E Sequences producing significant alignments: (Bits) Value Ahg359123 jgi|Araly1|359123|fgenesh1_pg.C_scaffold_9000163 2628 0.0 Ahg930748 jgi|Araly1|930748|scaffold_303205.1 1417 0.0 > Ahg359123 jgi|Araly1|359123|fgenesh1_pg.C_scaffold_9000163 Length=1674 Score = 2628 bits (1423), Expect = 0.0 Identities = 1588/1668 (95%), Gaps = 9/1668 (1%) Strand=Plus/Plus Query 99 TCCAGAACCGGAGGTTTCCGACCTGAGAATCTAGGGCAAAACGCAGTATCCTTAATCGGA 158 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 13 TCCAGAACCGGAGGTTTCCGACCAGAGAATCTAGGGCAAAACGCAGTAAGCTTAATCGGA 72 Query 159 AGCATAGGCTTCTCTGTACTCGTAATCGGAGTCGTAGTTTTCACCATTATCGCTGCTACA 218 ||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||| Sbjct 73 AGCATAGGCTTCTCTATATTCGTAATCGGAGTCGTAGTTTTCACCATTACCGCTGCTACA 132 Query 219 TATGAACCAGAAGATCCACTATTTCACCCATCTGACAAAATCACAACTTTCCTCACATCC 278 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 133 TATGAACCAGAAGATCCACTTTTTCACCCATCTGACAAAATCACAACTTTCCTCTCATCC 192 Query 279 AATTCAAACGCTACTCTTAAATCCGACGACAGTATTGTCAAAACCGGTGAAGATTTCATG 338 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 193 AATTCAAACGCTACTCTTAAATCCGACGACAGTGTTGTTAAAACCGGTGAAGATTTCATG 252 Query 339 GCGGCGAACCAAACCGCGTTTGGC-GGATTCATCAATATAGCTGATGTTGAAACATCTGA 397 |||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||| Sbjct 253 GCGGCGAACCAAACCGCG-TTCGCTGGATTCATCAACATAGCTGATGTGGAAACATCTGA 311 Query 398 GAATGACTCTGATGGTAATCAATTGGATTGTGATACCAATATCCCAATTGATTGCAAAGA 457 |||||| ||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||| Sbjct 312 GAATGATTCTGATGCTAATCAATTGGATTGTGATTCCAATGTCCCAATCGATTGCAAAGA 371 Query 458 TCCTGAAGTTTTTCACTTGATGATGAAAGCTACTATGGAGAAGTTTAAAGACAGTCACTT 517 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 372 TCCTGAAGTTTTTCACTTGATGATGAAAGCTACTATGGAGAAGTTTAAAGACATTCACTT 431 Query 518 TTATAAGTTTGGTAAACCTGTGATTGTGGAAGGTAGTAGTAGTTCTTGTGATATGGCTTG 577 ||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||| Sbjct 432 TTATAAGTTTGGTAAACCTGTGACTGTGGAA-G--GTACTAGTTCTTGTGATATGGCTTG 488 Query 578 GCGTTATAGACCTAAGGATGGTAAAGCGGCTGCGTTTTATAAGGATTATAGGAGGTTTGT 637 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 489 GCGTTATAGACCTAAGGATGGTAAAACGGCTACGTTTTATAAGGATTATAGGAGGTTTGT 548 Query 638 GATTGAAAAGTCTGGGAATTGTAGTGTTAGTGTGATGGGGATTGGTGAGTATCATTCGGG 697 ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 549 GATTGCAAAGTCTGAGAATTGTAGTGTTAGTGTGATGGGTATTGGTGAGTATCATTCGGG 608 Query 698 TGTGAATGCGAGGAAGCGGAAGAGGCCCGGGTTTCGAAATTCGAGTGGTGGTAAGGTTGA 757 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 609 TGTGAATGCGAGGAAGCGGAAGAGGCCCGGGTTTCGGAATTCGAGTGGTGGTAAGGTTGA 668 Query 758 TGATTTCGCATTGCCTGTAGTTGGTGAAGCAGTGAATGATTCACTTCCTGTTGTTGAGTC 817 ||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 669 TGATTTCTCATTGCCTGTGGTTGGTGAAGCAGTGAATGATTCACTTCCTGTGGTTGAGTC 728 Query 818 TGAAAATGTGTTTAAAGAAGGTCATTACTTGGTTTATTCTGGTGGAGGAGATAGGTGTAA 877 ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 729 TGAGAATGCGTTTAAAGAAGGTCATTACTTGGTTTATTCGGGTGGAGGAGATAGGTGTAA 788 Query 878 GAGTATGAACCATTTCTTGTGGAGTTTCTTGTGTGCTTTAGGGGAAGCTCAGTATTTGAA 937 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 789 GAGTATGAACCATTTCTTGTGGAGTTTCTTGTGTGCTTTGGGGGAAGCTCAGTATTTGAA 848 Query 938 TAGAACATTAGTGATGGATTTGACTCTTTGTTTGTCTTCTGTTTATACATTGTCTGGTCA 997 ||| || |||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 849 TAGGACTTTAGTGATGGATTTGAGTCTTTGTTTGTCTTCTGTTTATACGTTGTCTGGTCA 908 Query 998 AAACGAGGAAGGGAAGGACTTTAGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGC 1057 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 AAACGAGGAAGGAAAGGACTTTAGGTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGC 968 Query 1058 TTCTATGTTAGACCAGGTGCAGTTTTGGGCTGATTGGGGGAAATGGTATAAGAAGAATGG 1117 |||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 969 TTCTGTGATAGACCAGGTGCAGTTTTGGGCAGATTGGGGAAAATGGTATAAGAAGAATGG 1028 Query 1118 ATTAAAGCTTCATCTTGTGGAAGATTTTCGGGTCACACCGATGAAGCTTGTTGATGTGAA 1177 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || Sbjct 1029 ATTAAAGCTTCATCTTGTGGAAGACTTTAGGGTCACACCGATGAAGCTTGTTGATGTTAA 1088 Query 1178 GGACACGTTGATAATGAGGAAGTTCGGGACAGTAGAACCAGATAACTATTGGTATAGAGT 1237 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1089 GGACACGTTGATAATGAGGAAGTTCGGGACAGTAGAACCAGATAACTATTGGTACAGAGT 1148 Query 1238 ATGCGAAGGGGAGACAGAATCTGTTGTGCAAAGGCCTTGGAATCTATTGTGGAAATCTAA 1297 || |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| Sbjct 1149 TTGTGAAGGGGAGACAGAATCTGTTGTGCAAAAGCCTTGGCATCTGTTGTGGAAATCTAG 1208 Query 1298 ACGACTGATGGAGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTAT 1357 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1209 ACGGCTGATGGAGATTGTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTAT 1268 Query 1358 TCACATTGAGAGAGGAGACAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTTGAAAAGGA 1417 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1269 TCACATTGAGAGAGGAGATAAGGCGAGAAACAAGGAAGTTTGGCCTAATCTGGAAAAGGA 1328 Query 1418 TACTTCACCAAGCTCCATTTTATCTACCCTCCAGGACAAAATCGAACAAGGAAGGAATCT 1477 |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| Sbjct 1329 TACTTCACCAAGCTCCATTTTATCTACCCTGAAGGACAAAATCGAGCAAGGGAGGAATCT 1388 Query 1478 TTATATTGCAACAAATGAACCAGA-GTTATCTTTCTTTAACCCCT-TGAAAGACAAGTAC 1535 |||||||||||||||||||||||| || | ||||| ||||||| | |||||||||||||| Sbjct 1389 TTATATTGCAACAAATGAACCAGATGTAA-CTTTCCTTAACCC-TATGAAAGACAAGTAC 1446 Query 1536 AAACCCCATTTTCTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCA 1595 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1447 AAAACCCATCTTCTGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCA 1506 Query 1596 GAGACAACGAAGCTTAATGGAGGAAACCCAGTTGAGTTTGACGGTTACATGAGAGCGTCT 1655 ||||| | |||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1507 GAGACCATGAAGCTTAATGGAGGAAACCCAGTCGATTTTGACGGTTACATGAGAGCGTCT 1566 Query 1656 GTTGATACAGAGGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACC 1715 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567 GTTGATACGGAAGTGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACC 1626 Query 1716 AATGACTGTAGAGATGGAATCGGCACTTGCAACGTAGCAGCAAGCTGA 1763 |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1627 AATGACTGTAGAGACGGAATCGGCACTTGCAACGTAGCAGCAAGCTGA 1674 > Ahg930748 jgi|Araly1|930748|scaffold_303205.1 Length=1747 Score = 1417 bits (767), Expect = 0.0 Identities = 1404/1699 (83%), Gaps = 94/1699 (6%) Strand=Plus/Plus Query 108 GGAGGTTTCCGACCTGAGAATCTAGGGCAAAACGCA-GTATCCTTAATCGG-AAGCATAG 165 ||||||||||| |||||||||||||||||||||||| || ||||||| || || ||||| Sbjct 47 GGAGGTTTCCGTCCTGAGAATCTAGGGCAAAACGCACTTA-CCTTAATAGGTAA-CATAG 104 Query 166 GCTTCTCTGTAC-TCGTAATCGGAGT-CGTAGTTTTCACCATTATCGCTGCTACATATGA 223 ||||||| | | |||| ||||||| | || | |||||||||||||| || || || || Sbjct 105 GCTTCTCACT-CTTCGTCTTCGGAGTAC-TAATCTTCACCATTATCGCCGCAACTTACGA 162 Query 224 ACCAGAAGATCCACTATTTCACCCATCTGACAAAATCACAACTTTCCTCACATCCA-ATT 282 |||||||||||| || || |||||||||||||||||||||||||||||||| |||| | | Sbjct 163 ACCAGAAGATCCTCTCTTCCACCCATCTGACAAAATCACAACTTTCCTCACTTCCACA-T 221 Query 283 CAAACGCTACTCTTAAATCCGACGACAGTATTGTCAAAACCGGTGAAGATTTCATGGCGG 342 |||||||||| || | |||||| ||| |||| |||||||||||||||||||||| | Sbjct 222 CAAACGCTACACTGAGATCCGATGACTCCGTTGTTAAAACCGGTGAAGATTTCATGGTAG 281 Query 343 CGAACCAAACCGCGTTTGGCGGA-TTCATCAATATAGCTGATGTTG-A--AA-C-AT--C 394 |||| |||||||| ||| ||||| || ||||| ||| ||||||||| | || | || | Sbjct 282 CGAATCAAACCGCATTT-GCGGAGTTTATCAACATAACTGATGTTGAAGCAACCAATACC 340 Query 395 --TGAGAATGAC-TC----TGA-TGG-TAATCAATTGGATTGTGATACCAATATC-CCAA 444 ||||| | || || || || |||||| ||||| |||||| |||| | |||| Sbjct 341 AATGAGACT-ACTTCAGAGGGAGAGGCTAATCAGTTGGAATGTGATGTGAATA-CTCCAA 398 Query 445 TTGATTGCAAAGATCCTGAAGTTTTTCA-CTTGATGATGAAAGCTACTATGGAGAAGTTT 503 ||||||||||||||| ||||| ||||| ||| ||||||| ||||||||| ||||||||| Sbjct 399 TTGATTGCAAAGATCAAGAAGTGTTTCATCTT-ATGATGAGAGCTACTATTGAGAAGTTT 457 Query 504 AAAGACAGTCACTTTTATAAGTTTGGTAAACCTGTGATT-GTGGAAGGTAGTAGTAGTTC 562 ||||| | ||||||||||||||||||||| |||||| || || |||||| || | | ||| Sbjct 458 AAAGATATTCACTTTTATAAGTTTGGTAAGCCTGTGGTTGGT-GAAGGT-GT-G-AATTC 513 Query 563 TTGTGATATGGCTTGGCGTTATAGACCTAAGGATGGTAAAGCG-GCTGCGTTTTATAAGG 621 |||||||||||| ||||| ||||| ||||| ||||| ||| | ||||| |||||||||| Sbjct 514 TTGTGATATGGCGTGGCGGTATAGGCCTAAAGATGG-GAAGAGTGCTGCTTTTTATAAGG 572 Query 622 ATTATAGGAGGTTTG-TGATTGAAAAGTCTGGGAATTGTAGTGTTAGTG-TGATGGGGAT 679 ||||||||||||||| || ||| ||||||| |||||||||||| |||| || ||||||| Sbjct 573 ATTATAGGAGGTTTGTTG-TTGGTAAGTCTGAGAATTGTAGTGTGAGTGTTG-TGGGGAT 630 Query 680 TGGTGAGTATCATTCGGGTGTGAATGCGAGGAAGCGGAAG-AG-----G---CCCGGGTT 730 ||||||||||||||||||| |||||||||||||||||||| || | | ||||| Sbjct 631 TGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGCGGAAGAAGAATCAGAAAGCTGGGTT 690 Query 731 TCGA-AATTCGAGTGGTG-GTAAGGTTGATGATTTCGCATTGCCTGTAGTTGGTGAAGC- 787 | || || | ||||| | ||| ||||||||| | |||||||| ||||||||| | Sbjct 691 T-GAGAA---AACTGGTGAG-AAGAAAGATGATTTCTCTTTGCCTGTTGTTGGTGAA-CT 744 Query 788 AGTGAATGATTCACTTCCTGTTGTTGAGTCTGAAAATGTGTTTAAAGAAG-GTC-ATTAC 845 |||||||||||| |||||| | ||||||||||| | ||||||| ||| || | | | || Sbjct 745 AGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTT-AAG-AGTGGCAAGTAT 802 Query 846 TTGGTTTAT-TCTGGTGGAGGAGATAGGTGTAAGAGTATGAACCA-TTTCTTGTGGAGTT 903 ||||||||| | |||||||||||||||||||||||||||||| || |||| ||||||||| Sbjct 803 TTGGTTTATGT-TGGTGGAGGAGATAGGTGTAAGAGTATGAATCATTTTC-TGTGGAGTT 860 Query 904 TCTTGTGTGC-TTTAGGGGAAGCTCAGTATTTGAATAGAACATTAGTGATGGATTTGACT 962 | |||||||| || ||||||||||||||||||||||| || || |||||||||||||| Sbjct 861 TTTTGTGTGCACTT-GGGGAAGCTCAGTATTTGAATAGGACTTTGGTGATGGATTTGAC- 918 Query 963 CTT-TGTTTGTCTTCTGTTTATACATTGTCTGGTCAAAACGAGGAAGGGAAGGACTTTAG 1021 || |||||||||||| | || || | ||||||||| ||||||||||||||||||||| | Sbjct 919 GTTGTGTTTGTCTTCTATCTACACGTCGTCTGGTCAGAACGAGGAAGGGAAGGACTTTCG 978 Query 1022 GTTTTACTTTGATTTCGAGCATTTGAAAGAGGCTGCTTCTATGTTAGACCAGGTGCAGTT 1081 ||||||||||||||||||||||||||| || ||||||||| |||| || | || ||||| Sbjct 979 GTTTTACTTTGATTTCGAGCATTTGAAGGAAGCTGCTTCTGTGTTGGATGAAGTTCAGTT 1038 Query 1082 TTGGGCTGATTGGGGGAAA-TG-GT-A-TA-AGAAG-AATGGATTAAAGCTTCATCTTGT 1135 ||||||| | ||||||||| || | | | ||||| ||| |||| || ||||||| || Sbjct 1039 TTGGGCTAAGTGGGGGAAATTGCATAAGAAGAGAAGAAATAGATTGAATATTCATCTCGT 1098 Query 1136 GGAAGATTTTCGGGTCACACCGATGAAGCTTGTTGATGTGAAGGACACGTTGATAATGAG 1195 ||| |||||| ||||||| ||||||||||||| ||||| || || |||||||||||||| Sbjct 1099 GGAGGATTTTAGGGTCACGCCGATGAAGCTTGCGGATGTAAAAGATACGTTGATAATGAG 1158 Query 1196 GAAGTTCGGGACAGTAGAACCAGATAACTATTGGTATAGAGTATGCGAAGGGGA-GACAG 1254 |||||| ||| | ||||||||||| || |||||||| ||||| || ||||| || | ||| Sbjct 1159 GAAGTTTGGGTCGGTAGAACCAGACAATTATTGGTACAGAGTTTGTGAAGGAGATG-CAG 1217 Query 1255 AATCTGTTGTGCAAAGGCCTTGGAATCTATTGTGGAAATCTAA-ACGACTGATGGAGATT 1313 |||||||||| ||||||| ||| |||| || |||||||| || | | ||||||| ||| Sbjct 1218 AATCTGTTGTTAAAAGGCCGTGGCATCTGTTATGGAAATC-AAGAAGGTTGATGGAAATT 1276 Query 1314 GTTTCTGCGATTGCTTCGAGGTTAAACTGGGATTATGATGCTA-TTCACATTGAGAGAGG 1372 || ||||||||||| || ||||||||||||||||| ||||| | | |||||||||||||| Sbjct 1277 GTCTCTGCGATTGCATCAAGGTTAAACTGGGATTACGATGC-AGTACACATTGAGAGAGG 1335 Query 1373 AGACAAGGCGAGAAACAAGGAAG-TTTGGCCTAATCTTGAAAAGGATACTTCACCAAGCT 1431 ||| || || |||||||||| || | |||||||||||||||| ||||||||| || ||| Sbjct 1336 AGATAAAGCAAGAAACAAGG-AGCTGTGGCCTAATCTTGAAACGGATACTTCCCCGAGCG 1394 Query 1432 C-CATTTTATCTACCCTCCAGGACAAAATCGAACAAGGAAGGAATCTTTATATTGCAACA 1490 | | |||| || ||| | ||||||||| | ||| |||||||| |||| || || |||||| Sbjct 1395 CTC-TTTTGTCGACCTTGCAGGACAAAGTAGAAGAAGGAAGGCATCTCTACATCGCAACA 1453 Query 1491 AATGAACCAGAGTTATCTTTCTTTAACCCCTTGAAAGACAAGTACAAACC-C-CATTTTC 1548 |||||| ||||||||| ||||| ||||| ||||||||||||| | || | ||||||| Sbjct 1454 AATGAAGAAGAGTTATCCTTCTTCAACCCTTTGAAAGACAAGT--ATGCCACTCATTTTC 1511 Query 1549 TGGATGAGTTTAAGGATCTCTGGGACGAGAGCAGCGAATGGTATTCAGAGACAACGAAGC 1608 | | || | || ||||| |||||||||| ||||| |||||||||||||| || |||| Sbjct 1512 TTTACGACTACAAAGATCTGTGGGACGAGAATAGCGAGTGGTATTCAGAGACTACAAAGC 1571 Query 1609 TTAATGGAGGAAACCCAGTTGAGTTTGACGGTTACATGAGAGCGTCTGTTGATACAGAGG 1668 |||||||||| ||||| || |||||||| |||||||||||||| |||||||| ||||| | Sbjct 1572 TTAATGGAGGCAACCCGGTCGAGTTTGATGGTTACATGAGAGCATCTGTTGACACAGAAG 1631 Query 1669 TGTTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAATGATCTTACCAATGACTGTAGAG 1728 | ||||||||||||||||||||||||||||||||||| |||||||| || || || | || Sbjct 1632 TATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGCAAAG 1691 Query 1729 ATGGAATCGGCACTTGCAA 1747 ||||| | || || ||||| Sbjct 1692 ATGGAGTTGGGACCTGCAA 1710 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72904728930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5