BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12730.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497154 jgi|Araly1|497154|fgenesh2_kg.9__119__AT4G12730.1 2302 0.0
> Ahg497154 jgi|Araly1|497154|fgenesh2_kg.9__119__AT4G12730.1
Length=1490
Score = 2302 bits (1246), Expect = 0.0
Identities = 1415/1497 (95%), Gaps = 10/1497 (1%)
Strand=Plus/Plus
Query 1 ATAAGACTCCTCTCCAAATGCTACCACACAATTCCTCTATCAAAGCCGCCCAATCCTCCA 60
||||||| |||||||||||| |||||||||| | ||||||| ||||||| ||||||||
Sbjct 1 ATAAGACCCCTCTCCAAATGGTACCACACAAGTATTCTATCACAGCCGCCGAATCCTCCG 60
Query 61 CCCAAAAATGGCTTATCTCCGGCGAGCAGCCACCGCATTGGTTCTCATTTTCCAGCTCCA 120
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CCCAAAAATGGCTTATTTCCGGCGAGCAGCCACCGCATTGGTTCTCATTTCCCAGCTCCA 120
Query 121 tctctttctctctctctcAAATGCACATAACATAACCCGAATCTTGGCCAAAGACCCTGA 180
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 121 TCTCTTTCTCTCTCTCTCAAATGCGCATAACATAACCCGAATATTGGCCAAAGACCCTGA 180
Query 181 TTTCTCCACTTTCAACCACTATCTCTCAGCGACTCATCTCGCCGACGAGATCAACCGCCG 240
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 181 TTTCTCCACTTTCAACCACTACCTCTCAGCGACTCATCTCGCAGACGAGATCAACCGCCG 240
Query 241 GCAAACAATCACCGTCTTGGCCGTCGATAACTCAGCAATGTCCTCCATCCTCTCTAACGG 300
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 241 ACAAACAATCACCGTCTTGGCCGTTGATAACTCAGCAATGTCCTCAATCCTCTCTAAAGG 300
Query 301 ATACTCACTCTACCA-AATCCGCAACATTCTCTCTCTCCACGTCCTGGTCGATTACTTCG 359
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATACTCACTCTA-CACAATCCGCAACATTCTCTCTCTCCACGTCCTGGTCGATTACTTCG 359
Query 360 GCACCAAGAAACTTCACCAGATCACCGACGGCTCCACCTCCACTGCCTCCATGTTTCAAT 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCGCCAAGAAACTTCACCAGATCACCGACGGCTCCACCTCCACTGCCTCCATGTTTCAAT 419
Query 420 CCACCGGATCCGCCACCGGAACTTCTGGATACATCAACATCACCGATATAAAAGGCGGTA 479
|||| ||||||||||| ||||||||||||||| |||| |||||||||||||| || || |
Sbjct 420 CCACTGGATCCGCCACGGGAACTTCTGGATACGTCAATATCACCGATATAAAGGGTGGCA 479
Query 480 AAGTCGCTTTTGGTGTCCAAGACGACGATAGCAAGCTCACAGCTCACTACGTCAAATCCG 539
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 480 AAGTCGCTTTTGGTGTCCAAGACGATGATAGCAAGCTCACAGCTCACTACGTTAAATCCA 539
Query 540 TCTTTGAAAAGCCTTACAACATCTCTGTTCTTCACATCAGCCAAGTCTTAACCTCGCCGG 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTTTGAAAAGGCTTACAACATCTCTGTTCTTCACATCAGCCAAGTCTTAACCTCGCCGG 599
Query 600 AAGCAGAAGCTCCCACGGCGAGTCCCAGCGACCTCATCCTCACCACAATCCTCGAAAAAC 659
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 AAGCAGAAGCTCCCACAGCGAGTCCCAGCGACCTCATCCTCACCACAATCCTCGAGAAAC 659
Query 660 AAGGGTGCAAAGCTTTCTCCGACATCTTGAAGTCAACCGGCGCCGACAAAACGTTCCAAG 719
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 660 AAGGTTGCAAAGCTTTCTCCGACATCTTGAAGTCAACTGGCGCCGACAAAACGTTCCAAG 719
Query 720 ATACCGTAGACGGAGGCTTAACGGTGTTCTGTCCCTCCGACAGCGCTGTCGGTAAGTTCA 779
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 720 ATACCGTAGACGGAGGCTTAACGGTTTTCTGTCCGTCCGACAGCGCGGTCGGTAAGTTCA 779
Query 780 TGCCGAAATTCAAATCCCTTTCTCCGGCGAACAAGACTGCGTTAGTGCTTTACCACGGCA 839
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGCCGAAATTCAAAGCCCTTTCTCCGGCGAACAAGACTGCGTTAGTGCTTTACCACGGCA 839
Query 840 TGCCGGTTTACCAGTCGTTACAAATGCTTAGATCAGGTAACGGCGCCGTTAACACGTTAG 899
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 TGCCAGTTTACCAGTCATTACAGATGCTTAGATCAGGTAACGGCGCCGTTAACACGTTAG 899
Query 900 CGACGGAAGGTAACAACAAGTTTGATTTCACCGTTCAAAATGACGGAGAAGACGTGACGC 959
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 900 CGACGGAAGGTAACAACAAGTTTGATTTCACCGTTCAGAATGACGGAGAAGACGTGACGC 959
Query 960 TGGAGACGGACGTTGTGACGGCGAAGGTAATGGGGACGTTAAAGGATCAAGAGCCATTGA 1019
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCGAGACGGACGTTGTGACGGCGAAGGTAATGGGGACGTTAAAGGATCAAGAGCCATTGA 1019
Query 1020 TAGTTTACAAGATCGATAAAGTGTTGTTGCCTAGAGAAATCTACAAGGCCGTTAAGACGT 1079
||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1020 TAGTTTACAAGATTGATAAAGTGTTGCTGCCTAGAGAAATCTATAAGGCCGTTAAGACGA 1079
Query 1080 CCGCTCCAGCTCCTAAGTCGAGTAAGAAAAAGCCTAAGAACGCGGAGGCTGACGCCGACG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCGCTCCAGCTCCTAAGTCGAGTAAGAAAAAGCCTAAGAACGCGGAGGCTGACGCCGACG 1139
Query 1140 GACCTAGCGCCGATGCTCCGTCAGATGATGATGTTGAGGTGGCTGACGATAAAAACGGCG 1199
||||||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||
Sbjct 1140 GACCTAGCGCCGATGCTCCGTCAAATGATGACGGTGAGGTGGCTGATGATAAAAACGGCG 1199
Query 1200 CCGTATCAGCGATGATTACTCGAACAAGTAATGTCGTAACGGCCATTGTCGGGCTCTGTT 1259
||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 1200 CCGTATCAGCGATGATTACTCGAACGAGTACTGTCGTAACGGCCATTTTCGGGCTCTGTT 1259
Query 1260 TCGGAGTT-TGGCTTATGTGAAGTGACGTGGCATTTACCTCGCTTTGGGAATCTTGtttt 1318
| ||| || |||||||||||| ||||||||||| || ||||| || || |||||||||||
Sbjct 1260 TTGGA-TTCTGGCTTATGTGATGTGACGTGGCAATTGCCTCGATT-GG-AATCTTGTTTT 1316
Query 1319 cctttttctttgtgatctgtcggtttaatttattttacatattcttttttttGTTCACGT 1378
||||||||| | || ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1317 TTTTTTTCTTTTTTATTTGTCGGTTTAATTTATTTTACATATTCTTTTTTTT-T--ACGT 1373
Query 1379 TGATACTTGGTGTGGAGATTTGGAATAATTAATTGTTCCACTTGTGTTGGATCTGATATG 1438
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TGTTACTTTGTGTGGAGATTTGGAATAATTAATTGTTCCACTTGTGTTGGATCTGATATG 1433
Query 1439 TTTTATTCTaaa-aaaaTGTGATGATCATTCAAAAGAGTGATTGGTACGTTGGAATC 1494
|| |||| | | ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1434 TTCTATTTTTTATAAAATGTGATGATGATTCAAAAGAGTGATTGATACGTTGGAATC 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5