BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G12770.1
Length=3188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497125 jgi|Araly1|497125|fgenesh2_kg.9__90__AT4G12770.1 4202 0.0
Ahg333056 jgi|Araly1|333056|fgenesh1_pm.C_scaffold_9000084 2691 0.0
> Ahg497125 jgi|Araly1|497125|fgenesh2_kg.9__90__AT4G12770.1
Length=3128
Score = 4202 bits (2275), Expect = 0.0
Identities = 2915/3208 (91%), Gaps = 107/3208 (3%)
Strand=Plus/Plus
Query 8 AAAACGAAG-AAAAA-AGAGCT-TTTTAAAAAATCAAATGCTTTGATCCGATTCGTTAAT 64
||||||||| ||||| |||||| |||| |||||||||||||||||| |||||||||||
Sbjct 1 AAAACGAAGAAAAAAGAGAGCTCTTTT--GAAATCAAATGCTTTGATCTGATTCGTTAAT 58
Query 65 GGCGACTCAGATCTGAAGATAACCTCTTCTTCATTTCTAGTGGGCAAAATCTAAAGCTTT 124
|||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||
Sbjct 59 GGCGACTCAGATCTGAAGATAATCTCATCTTCATTTCTGGTGGGC-AAATCTAAAGCTTT 117
Query 125 TCGAATTCGGAGCTAGA-GAATTTAAAGGAATCCAATGGATGATTTCACAGGATTGTTAG 183
|||| ||||||| |||| ||| || |||||| ||||||||||||||||||||||||||||
Sbjct 118 TCGATTTCGGAGGTAGAGGAA-TTGAAGGAACCCAATGGATGATTTCACAGGATTGTTAG 176
Query 184 CGAGAGACTTCGGATTGAAACCTCAAGGCAAATCTGCGCCCATGGCTTCTCAATCAAACT 243
|||||||||||||||| |||||||| |||||||| || ||||||||| ||||||| ||||
Sbjct 177 CGAGAGACTTCGGATTCAAACCTCAGGGCAAATCAGCTCCCATGGCTGCTCAATCGAACT 236
Query 244 CTTCTGCCGCTGATTTCAACACTTTCGCTTCTTCTTATAGCTTCGCC-TCTGCCGCTGGT 302
||||||| |||||||||||| ||||||||||||||||||||||||| | ||||| |||
Sbjct 237 CTTCTGCTTCTGATTTCAACAGTTTCGCTTCTTCTTATAGCTTCGCCAAC-GCCGCCGGT 295
Query 303 AAAAAGTCGGATTCTTTGCCGGTGTTTGACGATCTTGGTCGAGATGGTGATGATCTTCTC 362
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AAAAAGTCGGAATCTTTGCCGGTGTTTGACGATCTTGGTCGAGATGGTGATGATCTTCTC 355
Query 363 TTCAGAGATGTGTTTAGCGGACCACCACCAAAGTATGGA---TCTTCTGGTGATTCTCGT 419
|||| |||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 356 TTCAAAGATGTGTTTAGCGGACCACCACCAAAGTACGGATCCTCTTCTGGGGATTCTCGT 415
Query 420 TCTCCATCTGCTCCTGCTTTTGACTATGATGTTATGTTCAAGGAACCCAAATCCAAATCA 479
|||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 416 TCTCCACCTGCTTCTGCTTTTGACTATGATGCTATGTTCAAGGAACCCAAATCCAAACCG 475
Query 480 GCGTCGTCTATGCCGGTTTATGATAAGCCTGTGTATGATGATGAGGATGTGTTTGAGTCT 539
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 476 GCGTCGTCCATGCCGGTCTATGACAAGCCTGTGTATGATGATGAGGATGTGTTTGAGTCT 535
Query 540 ATTCCTGAGCTCAAAATCCCTTCCACTTCTTCTCAGTCAGCTAGGTTTGA-GAATGTTTT 598
|||||||||||||||||||| |||||||||||||| || ||||||||||| | ||| |||
Sbjct 536 ATTCCTGAGCTCAAAATCCCATCCACTTCTTCTCAATCTGCTAGGTTTGATG-ATG-TTT 593
Query 599 CTCTTCTATCTCATCTTCTCCTACGAAGCACAGGAAACAGAACAGTTCTCCTTTCGATGA 658
|| || | ||| | ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 594 -TC-TC--T-TCA-C--CTCCT---AAGCACAGGAAACAGAACAGTTCTCCTTTTGATGA 642
Query 659 TCTCATGGGAAACAATTTGGGG-A-AGA---A-AGAGAGTGACCGAGAGGAGAAGGGTAG 712
||||||||| |||||||||||| | ||| | ||||||||||||||||||||||| |||
Sbjct 643 TCTCATGGGCAACAATTTGGGGAAGAGAGGGACAGAGAGTGACCGAGAGGAGAAGGCTAG 702
Query 713 TTCCATTTTTGATGATTTAATTCCCGGGTTTGGTCGCACTAGCTCTCCTCCAGCTAAACG 772
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 703 CTCCATTTTTGATGACTTGATTCCCGGGTTTGGTCGCACTAGCTCTCCTCCTCCTAAACG 762
Query 773 GACAACTTCAGAGACAACTAGTCAATCCCAGAAACCTCCGTATCGGACTGCCGAGACATC 832
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 763 GACAACTTCAGAGACAACAAATCAATCCCAGAAACCTCCGTATCGGACTGCCGAGACATC 822
Query 833 TTCTAATGTGAAAGAAGACCCATTTGTAGTCTTGGAGGAGTCTACATCAA-CCCTTAGAG 891
||| |||||| |||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct 823 TTCCAATGTGGAAGAAGACCCATTTGTAGTCTTGGAGGAGTCTGCATCAAGCCC-TAGAG 881
Query 892 AACCTTCCACAGGAGGGTTCACTGATCCATTGGAGGAAATTGGTAAATTCAACAGCAGAA 951
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 882 AACCTTCCACGGGAGGGTTCACTGATCCATTGGAGGATATTGGTAAATTCAACAGCAGAA 941
Query 952 AAACTGATCATTCATCTGTCCACGGAGGAGTATTTGTTGATACTGATCCTCTCGATAGTC 1011
|||||| ||||||||||||||| |||||| |||| ||| ||||||||||| ||||||
Sbjct 942 AAACTG---ATTCATCTGTCCACGAAGGAGTGTTTGCTGACACTGATCCTCTAAATAGTC 998
Query 1012 TTGGAAAATCAGGGCCAGATATGAATAGTAGAGGCAAGAGTCA-TTTAAGGCCACCAGGA 1070
|||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||
Sbjct 999 TTGGAAAACCAGGGCCAGATATGAATAGTAGAGGCAAGAGT-ATTTTAAGACCACCAGGA 1057
Query 1071 AACATCAGTGGCTCCCAGT---CACCAGTAGAAAGTTCTGGGCTTTACCATTCTAAGAAT 1127
||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||
Sbjct 1058 AACATCAGTGGCTCCCAGTCACCACCAGTAGAAAGTCCTGGGAGTTACCGTTCTAAGAAA 1117
Query 1128 GTTTCATTTGATGATGTTGTAGAGCCGCAGAATACGAGTACTCCACCACCTACCAATTCA 1187
|||||||||||||||||| ||||||| | |||||||||| |||| |||||||||| ||||
Sbjct 1118 GTTTCATTTGATGATGTTTTAGAGCCACGGAATACGAGTGCTCCGCCACCTACCAGTTCA 1177
Query 1188 GATGGAAGTTTTGAATCATCTGATGATGTGTGGCTTACTGTATCTGAGATCCCCCTCTTT 1247
||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1178 AATGGAAGTTTTGAGTCATCTGATGATGTTTGGCTTACTGTATCCGAGATCCCCCTCTTT 1237
Query 1248 ACGCAACCTACGAGTGCTCCACCACCTACGAGACCTCCACCACCAAGACCTACACGTCCT 1307
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1238 ACGCAACCTACGAGTGCTCCGCCACCTACGAGACCTCCACCACCAAGACCTACACGTCCT 1297
Query 1308 ATTAAAAAGAAGGTTAATGAGCCTTCTATACCGACGTCTGCTTACCACTCACACGTTCCT 1367
|| ||||||| |||||| ||||||||||||||||| ||| || ||||||||||||||| |
Sbjct 1298 ATAAAAAAGAGGGTTAACGAGCCTTCTATACCGACCTCTACTAACCACTCACACGTTCTT 1357
Query 1368 AGCTCAGGAAGAGCTTCTGTAAATAGCCCGACAGCATCTCAAATGGATGAACTCGACGAT 1427
||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1358 AGCACAGCTAGAGCTTCTGTAAATAGCCCGACAGCATCTCAAATGGATGAACTTGACGAT 1417
Query 1428 TTTTCTATTGGCAGAAATCAGACAGCTGCGAATGGATATCCTGATCCTTCCTCTGGTGAA 1487
||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 1418 TTTTCTATTGGCAGAAATCAGACCGCTGCTAATGGATATCCTGATCCTCCCTCTGGTGAA 1477
Query 1488 GATTCAGATGTTTTTTCTACTGCAGCTGCATCAGCTGCTGCCATGAAGGATGCCATGGAT 1547
||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1478 GATTCAGATATTTTTTCTGCTGCCGCTGCATCAGCTGCTGCCATGAAGGATGCCATGGAT 1537
Query 1548 AAAGCAGAAGCAAAGTTTAGGCATGCTAAGGAAAGGAGGGAGAAAGAAAGTTTGAAGGCA 1607
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 1538 AAAGCAGAAGCAAAGTTTAGGCATGCTAAGGAAAGGAGAGTGAAAGAAAATTTGAAGGCA 1597
Query 1608 AGTAGAAGTAGAGAAGGCGATCACACGGAAAATTATGATTCTCGTGAAAGGGAACTTAGA 1667
||||||| |||||||| ||||| || || ||||||||||||||||||||||||||||||
Sbjct 1598 AGTAGAAATAGAGAAGAAGATCAAACAGAGAATTATGATTCTCGTGAAAGGGAACTTAGA 1657
Query 1668 GAAAAGCAAGTGAGATTGGACCGTGAAagggcagagagggaggcagagatggaaaaa-ac 1726
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1658 GAAAATCAAGTGAGATTGGACCGTGAAAGGGCAGAGAGGGAGGCAGAGATGGTAAAAGAG 1717
Query 1727 ccaggcgagggagagagaggagagagaaagagagcagaaaagaattgaaagagaaaggga 1786
| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1718 C-AGGAGAGGGAGAGAGAGGAGAGAGAAAGAGAGCAGAAGAGAATTGAGAGAGAAAGGGA 1776
Query 1787 aagaCTGTTGGCTAGACAGGCGGTAGAGAGGGCTACAAGGGAAGCACGCGAAAGAGCAGC 1846
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1777 AAGACTGTTGGCTAGACAGGCGGTAGAGAGGGCTACAAGAGAAGCACGCGAAAGAGCAGC 1836
Query 1847 CACTGAAGCTCATGCGAAAGTTCAAAGAGCTGCTGTTGGGAAGGTTACTGATGCCCGAGA 1906
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1837 CACTGAAGCTCATGCGAAAGTTCAAAGAGCTGCTGTTGGGAAGGCTACCGATGCCCGAGA 1896
Query 1907 GCGCGCCGAAAGAGCAGCAGTTCAAAGAGCCCATGCTGAAGCACGTGAAAGGGCAGCTGC 1966
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1897 ACGCGCCGAAAGAGCAGCGGTTCAAAGAGCCCATGCTGAAGCACGTGAAAGGGCAGCTGC 1956
Query 1967 TGGGGCAAGAGAAAAGGCTGAGAAAGCTGCAGCAGAAGCTAGAGAAAGGGCGAATGCTGA 2026
||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct 1957 AGGGGCAAGAGAAAAGGCTGCGAAAGCTGCGGCAGAAGCTAGAGAAAGGGTGAATGCTGA 2016
Query 2027 AGTGCGGGAAAAGGAAGCAAAGGTTAGGGCAGAACGAGCTGCTGTTGAAAGGGCAGCTGC 2086
|| |||||| |||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 2017 AGCGCGGGAGAAGGAAGCAAGGGTTAGGGCAGAACGAGCTGCTGTGGAAAGGGCCGCTGC 2076
Query 2087 TGAGGCACGTGGAAGGGCAGCTGCTCAAGCTAAAGCTAAGCAGCAGCAAGAGAATAATAA 2146
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 2077 TGAGGCACGTGGAAGGGCAGCTGCCCAAGCTAAAGCTAAGCAGCAGCAAGAAAATAACAA 2136
Query 2147 TGATCTTGACTCCTTCTTTAACTCGGTTTCTAGACCAAGCAGTGTTCCAAGACAGAGAAC 2206
|||||||||||||||||||| ||| |||||||||||| ||||| |||| ||||||||||
Sbjct 2137 TGATCTTGACTCCTTCTTTAGCTCAATTTCTAGACCAAACAGTGCTCCACGACAGAGAAC 2196
Query 2207 CAACCCTCCGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTTGAATCTAGCAG 2266
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2197 CAACCCTCTGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGCAG 2256
Query 2267 GCCATCTTCGCGAGTGCCTTCTGGCCCTACAGAGAACTTGAGAAAGGCCTCTTCAGCAAC 2326
| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 2257 GGAATCTTCGCGAGTGCCTTCTGGCCCAACAGAGAACTTGAGAAAGGCCTCTTCAGTAAC 2316
Query 2327 AAACATTGTTGATGATCTCAGTTCAATATTTGGAGCTCCAGCTTCCCAATCTGGTGGGTT 2386
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 2317 AAACATTGTTGATGATCTCAGTTCAATATTTGGAGTTCCAGCTACCCAATCTGGTGGGTT 2376
Query 2387 TCAAGATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGGCTGGAACGTCACCAGAG 2446
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2377 TCAAGATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGGCTGGAACGCCACCAGAG 2436
Query 2447 GACACAGGAGCGGGCTGCAAAAGCACTTGCTGAGAAAAATGAACGTGATCTTCAAGTACA 2506
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2437 GACACAGGAGCGGGCTGCAAAAGCACTTGCTGAGAAAAATGAACGTGATCTACAAGTACA 2496
Query 2507 AAGAGAACAAGCTGAGAAAGATAGGATTGGTGG-GACCCTGGATGTTGAGATAAGACGTT 2565
||||||||||| |||||||||||||||||| || ||| ||||||| ||||||| |||||
Sbjct 2497 AAGAGAACAAGTTGAGAAAGATAGGATTGG-GGTGACTTTGGATGTGGAGATAAAACGTT 2555
Query 2566 GGGGTGCAGGGAAGGAGGGAAACTTGCGTGCTCTGCTTTCAACATTACAATATGTTCTTT 2625
||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||
Sbjct 2556 GGGGTGCAGGGAAGGAGGGAAACCTGCGAGCTCTGCTTTCGACATTACAATATGTTCTTT 2615
Query 2626 GGCCAGAATGCGGTTGGCAGCCTGTATCGTTGACCGATTTAATTACCGG-TGCATCTGTC 2684
|||||||||| |||||||||||||| || ||||||||||||||||| || ||||||||||
Sbjct 2616 GGCCAGAATGTGGTTGGCAGCCTGTTTCATTGACCGATTTAATTAC-GGCTGCATCTGTC 2674
Query 2685 AAGAAAGTTTACAGGAAGGCCACTCTCTGTATACATCCTGACAAAGTTCAGCAAAAAGGA 2744
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 2675 AAGAAAGTTTACAGGAAGGCCACTCTCTGTATACACCCTGACAAAGTTCAACAAAAAGGT 2734
Query 2745 GCCAATCTCCAGCAGAAATACATTGCCGAGAAAGTTTTCGACATGCTCAAGGAAGCATGG 2804
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2735 GCCAATCTCCAGCAGAAATACATTGCCGAGAAAGTTTTTGACATGCTCAAGGAAGCATGG 2794
Query 2805 AACAAATTCAACTCAGAGGAACTCTTTTGAAAAAACCTGAGATAATGTTTTTGAGAGTGT 2864
||||| ||||||||||| |||||||| |||||||| || | |||| | ||
Sbjct 2795 AACAAGTTCAACTCAGAAGAACTCTTCTGAAAAAA--TG---T--TGTTC--G----TG- 2840
Query 2865 GTTGTTCGTCTCTAGCGCGAAAGATGAAGCATGTGGCATTCATTCGAATTCGAAAGCCAA 2924
| || || | | | || |||||| ||| ||||||||||| ||| | |||||
Sbjct 2841 G--GT-CGCC-C-AT----AA-GATGAATCATTTGGCATTCATTA-AAT---A--GCCAA 2884
Query 2925 AAATGGTGCCCAAGTTGGAAGCAGAGAGTTGTCGATAGAGTATGTATTCCCCAG-ACTGA 2983
|| |||||||||||||||| ||||| |||||| |||||||||||||||||| || | |||
Sbjct 2885 AA-TGGTGCCCAAGTTGGAGGCAGATAGTTGTGGATAGAGTATGTATTCCC-AGGATTGA 2942
Query 2984 TTACCCATCACTGCATCATCATATACCA-CGCAGCAACTGGGCATTCttttttttGTTGC 3042
||||||||||||||||||| ||| || | ||||| || ||||||||| |||||| |||
Sbjct 2943 TTACCCATCACTGCATCATTATAGAC-ATCGCAGTAATTGGGCATTCATTTTTT-GTTA- 2999
Query 3043 TAATTTTTCCTTCTCATTACCCTCTTCTTCAAGAGTATGATGTCAAATGTATTGATGTTG 3102
|||||| |||| |||||| ||| | ||| |||| | ||| | || || | |
Sbjct 3000 -AATTTT-CCTTGTCATTATCCT-T-CTT---GAGTCTC--GTCCT-T-TAA-GAAAT-G 3046
Query 3103 AATTCTGTATCaaaaaaaCACAATACTTGAGAGCTGTGTATTCTTGTTTCCAAACTATTT 3162
||| | || |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 3047 TATT--G-ATGAAAA---CACAATACTTGAGAGCTGTGTATTGTTGTTTCCAAACTATTT 3100
Query 3163 ATATAT--GCATATATGAACATTCTTTT 3188
|||||| ||||||||||| ||||||||
Sbjct 3101 ATATATATGCATATATGAATATTCTTTT 3128
> Ahg333056 jgi|Araly1|333056|fgenesh1_pm.C_scaffold_9000084
Length=2763
Score = 2691 bits (1457), Expect = 0.0
Identities = 1740/1874 (93%), Gaps = 30/1874 (2%)
Strand=Plus/Plus
Query 159 ATGGATGATTTCACAGGATTGTTAGCGAGAGACTTCGGATTGAAACCTCAAGGCAAATCT 218
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1 ATGGATGATTTCACAGGATTGTTAGCGAGAGACTTCGGTTTGAAACCTCAGGGCAAATCA 60
Query 219 GCGCCCATGGCTTCTCAATCAAACTCTTCTGCCGCTGATTTCAACACTTTCGCTTCTTCT 278
|| ||||||||| ||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 61 GCTCCCATGGCTGCTCAATCGAACTCTTCTGCTTCTGATTTCAACAGTTTCGCTTCTTCT 120
Query 279 TATAGCTTCGCC-TCTGCCGCTGGTAAAAAGTCGGATTCTTTGCCGGTGTTTGACGATCT 337
|||||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 121 TATAGCTTCGCCAAC-GCCGCCGGTAAAAAGTCGGAATCTTTGCCGGTGTTTGACGATCT 179
Query 338 TGGTCGAGATGGTGATGATCTTCTCTTCAGAGATGTGTTTAGCGGACCACCACCAAAGTA 397
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 180 TGGTCGAGATGGTGATGATCTTCTCTTCAAAGATGTGTTTAGCGGACCACCACCAAAGTA 239
Query 398 TGGA---TCTTCTGGTGATTCTCGTTCTCCATCTGCTCCTGCTTTTGACTATGATGTTAT 454
||| |||||||| ||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 240 CGGATCCTCTTCTGGGGATTCTCGTTCTCCACCTGCTTCTGCTTTTGACTATGATGCTAT 299
Query 455 GTTCAAGGAACCCAAATCCAAATCAGCGTCGTCTATGCCGGTTTATGATAAGCCTGTGTA 514
|||||||||||||||||||||| | |||||||| |||||||| ||||| |||||||||||
Sbjct 300 GTTCAAGGAACCCAAATCCAAACCGGCGTCGTCCATGCCGGTCTATGACAAGCCTGTGTA 359
Query 515 TGATGATGAGGATGTGTTTGAGTCTATTCCTGAGCTCAAAATCCCTTCCACTTCTTCTCA 574
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TGATGATGAGGATGTGTTTGAGTCTATTCCTGAGCTCAAAATCCCATCCACTTCTTCTCA 419
Query 575 GTCAGCTAGGTTTGA-GAATGTTTTCTCTTCTATCTCATCTTCTCCTACGAAGCACAGGA 633
|| ||||||||||| | ||| ||| || || | ||| | ||||| ||||||||||
Sbjct 420 ATCTGCTAGGTTTGATG-ATG-TTT-TC-TC--T-TCA-C--CTCCT---AAGCACAGGA 466
Query 634 AACAGAACAGTTCTCCTTTCGATGATCTCATGGGAAACAATTTGGGG-A-AGA---A-AG 687
||||||||||||||||||| |||||||||||||| |||||||||||| | ||| | ||
Sbjct 467 AACAGAACAGTTCTCCTTTTGATGATCTCATGGGCAACAATTTGGGGAAGAGAGGGACAG 526
Query 688 AGAGTGACCGAGAGGAGAAGGGTAGTTCCATTTTTGATGATTTAATTCCCGGGTTTGGTC 747
||||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||||
Sbjct 527 AGAGTGACCGAGAGGAGAAGGCTAGCTCCATTTTTGATGACTTGATTCCCGGGTTTGGTC 586
Query 748 GCACTAGCTCTCCTCCAGCTAAACGGACAACTTCAGAGACAACTAGTCAATCCCAGAAAC 807
|||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 587 GCACTAGCTCTCCTCCTCCTAAACGGAAAACTTCAGAGACAACAAATCAATCCCAGAAAC 646
Query 808 CTCCGTATCGGACTGCCGAGACATCTTCTAATGTGAAAGAAGACCCATTTGTAGTCTTGG 867
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 647 CTCCGTATCGGACTGCCGAGACATCTTCCAATGTGGAAGAAGACCCATTTGTAGTCTTGG 706
Query 868 AGGAGTCTACATCAACCCTTAGAGAACCTTCCACAGGAGGGTTCACTGATCCATTGGAGG 927
|||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 707 AGGAGTCTGCATCAACCCCTAGAGAACCTTCCACGGGAGGGTTCACTGATCCATTGGAGG 766
Query 928 AAATTGGTAAATTCAACAGCAGAAAAACTGATCATTCATCTGTCCACGGAGGAGTATTTG 987
| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 767 ATATTGGGAAATTCAACAGCAGAAAAACTGATCATTCATCTGTCCACAGAGGAGTGTTTG 826
Query 988 TTGATACTGATCCTCTCGATAGTCTTGGAAAATCAGGGCCAGATATGAATAGTAGAGGCA 1047
|||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 827 TTGATATTGACCCTCTCGATAGTCTTGGAAAATCAGGGCCGGATATGAATAATAGAGGCA 886
Query 1048 AGAGTCATTTAAGGCCACCAGGAAACATCAGTGGCTCCCAGT---CACCAGTAGAAAGTT 1104
| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 887 AAAGTCATTTAAGACCACCAGGAAACATCAGTGGCTCCCAGTCACCACCAGTAGAAAGTC 946
Query 1105 CTGGGCTTTACCATTCTAAGAATGTTTCATTTGATGATGTTGTAGAGCCGCAGAATACGA 1164
||||| ||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 947 CTGGGAGTTACCATTCGAAGAAAGTTTCATTTGATGATGTTTTAGAGCCACAGAATACGA 1006
Query 1165 GTACTCCACCACCTACCAATTCAGATGGAAGTTTTGAATCATCTGATGATGTGTGGCTTA 1224
||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1007 GTACTCCGCCACCTACCAATTCAAATGGAAGTTTTGAGTCATCTGATGATGTGTGGCTTA 1066
Query 1225 CTGTATCTGAGATCCCCCTCTTTACGCAACCTACGAGTGCTCCACCACCTACGAGACCTC 1284
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1067 CTGTATCCGAGATCCCCCTCTTTACGCAACCTACGAGTGCTCCGCCACCTACGAGACCTC 1126
Query 1285 CACCACCAAGACCTACACGTCCTATTAAAAAGAAGGTTAATGAGCCTTCTATACCGACGT 1344
||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |
Sbjct 1127 CACCACCAAGACCTACACGTCCTATAAAAAAGAGGGTTAACGAGCCTTCTATACCGACCT 1186
Query 1345 CTGCTTACCACTCACACGTTCCTAGCTCAGGAAGAGCTTCTGTAAATAGCCCGACAGCAT 1404
|| || ||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||
Sbjct 1187 CTACTAACCACTCACACATTCCTAGCACAGCTAGAGCTTCTGTAAATAGCCCGGCAGCAT 1246
Query 1405 CTCAAATGGATGAACTCGACGATTTTTCTATTGGCAGAAATCAGACAGCTGCGAATGGAT 1464
||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1247 CTCAAATCGATGAACTCGAGGATTTTTCTATTGGCAGAAATCAGACCGCTGCTAATGGAT 1306
Query 1465 ATCCTGATCCTTCCTCTGGTGAAGATTCAGATGTTTTTTCTACTGCAGCTGCATCAGCTG 1524
||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1307 ATCCTGATCCTCCCTCTGGTGAAGATTCAGATGTTTTTTCTGCTGCCGCTGCATCAGCTG 1366
Query 1525 CTGCCATGAAGGATGCCATGGATAAAGCAGAAGCAAAGTTTAGGCATGCTAAGGAAAGGA 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 CTGCCATGAAGGATGCCATGGATAAAGCAGAAGCAAAGTTTAGGCATGCTAAGGAAAGGA 1426
Query 1585 GGGAGAAAGAAAGTTTGAAGGCAAGTAGAAGTAGAGAAGGCGATCACACGGAAAATTATG 1644
| | |||||||| ||||||||||||||||| |||||||| ||||| || || |||||||
Sbjct 1427 GAGTGAAAGAAAATTTGAAGGCAAGTAGAAATAGAGAAGAAGATCAAACAGAGAATTATG 1486
Query 1645 ATTCTCGTGAAAGGGAACTTAGAGAAAAGCAAGTGAGATTGGACCGTGAAagggcagaga 1704
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1487 ATTCTCGTGAAAGGGAACTTAGAGAAAATCAAGTGAGATTGGACCGTGAAAGGGCAGAGA 1546
Query 1705 gggaggcagagatgg-aaaaaacccaggcgagggagagagaggagagagaaagagagcag 1763
||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||||
Sbjct 1547 GGGAGGCAGAGATGGTAAAAGA-GCAGGAGAGGGAGAGAGAGGAGAGAGAAAGAGAGCAG 1605
Query 1764 aaaagaattgaaagagaaagggaaagaCTGTTGGCTAGACAGGCGGTAGAGAGGGCTACA 1823
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 AAGAGAATTGAGAGAGAAAGGGAAAGACTGTTGGCTAGACAGGCGGTAGAGAGGGCTACA 1665
Query 1824 AGGGAAGCACGCGAAAGAGCAGCCACTGAAGCTCATGCGAAAGTTCAAAGAGCTGCTGTT 1883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 AGGGAAGCACGCGAAAGAGCAGCCACTGAAGCTCATGCGAAAGTTCAAAGAGCTGCTGTT 1725
Query 1884 GGGAAGGTTACTGATGCCCGAGAGCGCGCCGAAAGAGCAGCAGTTCAAAGAGCCCATGCT 1943
||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1726 GGGAAGGCTACCGATGCCCGAGAGCGCGCCGAAAGAGCAGCGGTTCAAAGAGCCCATGCT 1785
Query 1944 GAAGCACGTGAAAGGGCAGCTGCTGGGGCAAGAGAAAAGGCTGAGAAAGCTGCAGCAGAA 2003
||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 1786 GAAGCACGTGAAAGGGCAGCTGCAGGGGCAAGAGAAAAGGCTGCGAAAGCTGCGGCAGAA 1845
Query 2004 GCTAGAGAAAGGGC 2017
|||||||||| |||
Sbjct 1846 GCTAGAGAAAAGGC 1859
Score = 713 bits (386), Expect = 0.0
Identities = 464/500 (93%), Gaps = 11/500 (2%)
Strand=Plus/Plus
Query 1974 AGAGAAAAGGCTGAGAAAGCTGCAGCAGAAGCTAGAGAAAGGGCGAATGCTGAAGTGCGG 2033
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1849 AGAGAAAAGGCTGAGAAAGCTGCAGCAGAAGCTAGAGAAAGGGTGAATGCTGAAGCGCGG 1908
Query 2034 GAAAAGGAAGCAAAGGTTAGGGCAGAACGAGCTGCTGTTGAAAGGGCAGCTGCTGAGGCA 2093
|| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1909 GAGAAGGAAGCAAGGGTTAGGGCAGAACGAGCTGCTGTGGAAAGAGCAGCTGCTGAGGCA 1968
Query 2094 CGTGGAAGGGCAGCTGCTCAAGCTAAAGCTAAGCAGCAGCAAGAGAATAATAATGATCTT 2153
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1969 CGTGGAAGGGCAGCTGCCCAAGCTAAAGCTAAGCAGCAGCAAGAAAATAACAATGATCTT 2028
Query 2154 GACTCCTTCTTTAACTCGGTTTCTAGACCAAGCAGTGTTCCAAGACAGAGAACCAACCCT 2213
||||||||||||| ||| |||||||||||| ||||| |||| |||||||||||||||||
Sbjct 2029 GACTCCTTCTTTAGCTCAATTTCTAGACCAAACAGTGCTCCACGACAGAGAACCAACCCT 2088
Query 2214 CCGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTTGAATCTAGCAGGCCATCT 2273
| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 2089 CTGGATCCTTTCCAGGATTCATGGAACAAAGGAGGATCTTTCGAATCTAGAAGGGAATCT 2148
Query 2274 TCGCGAGTGCCTTCTGGCCCTACAGAGAACTTGAGAAAGGCCTCTTCAGCAACAAACATT 2333
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2149 TCGCGAGTGCCTTCTGGCCCTACAGAGAATTTGAGAAAGGCCTCTTCAGTAACAAACATT 2208
Query 2334 GTTGATGATCTCAGTTCAATATTTGGAGCT----C-----C--AGCTTCCCAATCTGGTG 2382
|||||||||||||||||||||||||||| | | | |||| ||||||||||||
Sbjct 2209 GTTGATGATCTCAGTTCAATATTTGGAGGTAGTGCAATTTCTGAGCTACCCAATCTGGTG 2268
Query 2383 GGTTTCAAGATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGGCTGGAACGTCACC 2442
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2269 GGTTTCAAGATGTTGATGGAGAAACTGAAGAGAGACGACGTGCCAGGCTGGAACGCCACC 2328
Query 2443 AGAGGACACAGGAGCGGGCT 2462
||||||||||||||||||||
Sbjct 2329 AGAGGACACAGGAGCGGGCT 2348
Score = 627 bits (339), Expect = 2e-178
Identities = 359/369 (97%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 2466 AAAGCACTTGCTGAGAAAAATGAACGTGATCTTCAAGTACAAAGAGAACAAGCTGAGAAA 2525
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2395 AAAGCACTTGCTGAGAAAAATGAACGTGATCTACAAGTACAAAGAGAACAAGCTGAGAAA 2454
Query 2526 GATAGGATTGGTGGGACCCTGGATGTTGAGATAAGACGTTGGGGTGCAGGGAAGGAGGGA 2585
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2455 GATAGGATTGGTGAGACCCTGGATGTTGAGATAAGACGTTGGGGTGCAGGGAAGGAGGGA 2514
Query 2586 AACTTGCGTGCTCTGCTTTCAACATTACAATATGTTCTTTGGCCAGAATGCGGTTGGCAG 2645
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 2515 AACTTGCGTGCTCTGCTTTCGACATTACAATATGTTCTATGGCCAGAATGCGGTTGGCAG 2574
Query 2646 CCTGTATCGTTGACCGATTTAATTACCGGTGCATCTGTCAAGAAAGTTTACAGGAAGGCC 2705
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2575 CCTGTTTCATTGACCGATTTAATTACCGGAGCATCTGTCAAGAAAGTTTACAGGAAGGCC 2634
Query 2706 ACTCTCTGTATACATCCTGACAAAGTTCAGCAAAAAGGAGCCAATCTCCAGCAGAAATAC 2765
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2635 ACTCTCTGTATACATCCTGACAAAGTTCAGCAAAAAGGGGCCAATCTCCAGCAGAAATAC 2694
Query 2766 ATTGCCGAGAAAGTTTTCGACATGCTCAAGGAAGCATGGAACAAATTCAACTCAGAGGAA 2825
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2695 ATTGCCGAGAAAGTTTTCGACATGCTCAAGGAAGCATGGAACAAGTTCAACTCAGAAGAA 2754
Query 2826 CTCTTTTGA 2834
|||||||||
Sbjct 2755 CTCTTTTGA 2763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120441354690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5