BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12800.1 Length=984 Score E Sequences producing significant alignments: (Bits) Value Ahg915184 jgi|Araly1|915184|Al_scaffold_0009_153 1037 0.0 > Ahg915184 jgi|Araly1|915184|Al_scaffold_0009_153 Length=660 Score = 1037 bits (561), Expect = 0.0 Identities = 628/661 (95%), Gaps = 2/661 (0%) Strand=Plus/Plus Query 148 ATGGCAGCGAGTGCATCTCCAATGGCGAGCCAGCTAAGGAGCAGCTTCTCCTCCGCTTCT 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAGCGAGTGCATCTCCAATGGCGAGCCAGCTAAGGAGCAGCTTCTCCTCCGCTTCT 60 Query 208 CTTTCTCAGCGTCTCGCCGTCCCGAAGGGCATCTCCGGTGCTCCTTTCGGTGTTTCTCCG 267 ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 CTTTCTCGGCGTCTCGCTGTCCCGAAGGGCATCTCCGGCGCTCCTTTCGGTGTTTCTCCG 120 Query 268 ACCAAAAGAGTCTCTTCCTTCACTGTCCGAGCTGTTAAATCCGACAAGACAACATTCCAA 327 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 121 ACCAAAAGAGTCTCTTCCTTCACCGTCCGAGCTGTTAAATCCGACAAGCCAACATTCCAA 180 Query 328 GTAG-TTCAACCAATCAACGGTGATCCATTCATCGGAAGTTTGGAAACTCCGGTGACATC 386 || | |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| Sbjct 181 GT-GATTCAACCAATCAACGGCGATCCATTCATCGGAAGCTTGGAAACTCCGGTCACATC 239 Query 387 AAGCCCATTGATCGCGTGGTACCTTTCCAACCTCCCTGGATACCGTACCGCCGTCAACCC 446 |||||| |||||||| ||||||||||| |||||||| || |||||||| ||||||||||| Sbjct 240 AAGCCCCTTGATCGCATGGTACCTTTCTAACCTCCCCGGTTACCGTACTGCCGTCAACCC 299 Query 447 TCTCCTCCGCGGTGTGGAAGTGGGCCTGGCCCATGGTTTCTTCTTAGTGGGCCCATTCGT 506 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCTCCTCCGTGGTGTGGAAGTGGGCCTGGCCCATGGTTTCTTCTTAGTGGGCCCATTCGT 359 Query 507 CAAAGCTGGCCCATTAAGGAACACTGCTTACGCCGGGTCAGCCGGGTCTTTAGCCGCGGC 566 ||| ||||| || ||||||||||||||||| || ||| ||||||||||||| |||||||| Sbjct 360 CAAGGCTGGTCCTTTAAGGAACACTGCTTATGCTGGGACAGCCGGGTCTTTGGCCGCGGC 419 Query 567 TGGGCTGGTAGTCATCCTCAGCATGTGCCTCACCATCTACGGTATCTCTTCTTTCAAGGA 626 |||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 420 TGGGCTAGTAGTCATCCTCAGCATGTGCCTCACCATCTATGGTATCTCTTCATTCAAGGA 479 Query 627 AGGAGAGCCATCGATCGCACCGAGTTTGACTTTGACTGGGCGGAAGAAGCAGCCTGACCA 686 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 480 AGGAGAGCCGTCGATCGCACCGAGTTTGACTTTGACCGGGCGGAAGAAGCAGCCTGACCA 539 Query 687 GCTTCAAACGGCTGATGGATGGGCTAAGTTCACTGGAGGATTCTTCTTTGGAGGGATCTC 746 ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 540 GCTTCAAACGGCTGAAGGATGGGCTAAGTTCACAGGAGGGTTCTTCTTTGGAGGGATCTC 599 Query 747 TGGGGTGACTTGGGCTTACTTCCTTCTCTACGTTCTTGACCTTCCTTACTTCGTCAAGTA 806 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 600 TGGGGTGACTTGGGCTTACTTCCTTCTCTACGTTCTTGACCTTCCTTACTACGTCAAGTA 659 Query 807 A 807 | Sbjct 660 A 660 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36559877403 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5