BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12830.1 Length=1490 Score E Sequences producing significant alignments: (Bits) Value Ahg359089 jgi|Araly1|359089|fgenesh1_pg.C_scaffold_9000129 1901 0.0 Ahg925760 jgi|Araly1|925760|scaffold_201321.1 385 6e-106 > Ahg359089 jgi|Araly1|359089|fgenesh1_pg.C_scaffold_9000129 Length=1182 Score = 1901 bits (1029), Expect = 0.0 Identities = 1132/1183 (96%), Gaps = 2/1183 (0%) Strand=Plus/Plus Query 49 ATGGCGGTTCATATTCACAACCCTAACTTTTTCCACACTCATCATCTCCGAGCATCTCTT 108 ||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 1 ATGGCGGTTCATATTCACAACCCTAACTTTTTCAACACTCATCGTCTCCGATCATCTCTT 60 Query 109 ACTTCTGCCTCTGCATCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAAGTAT 168 |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 61 ACTTCTGCTTCTGCACCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAAATAT 120 Query 169 C-CTAGCTTCCTCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGTTTC 227 | | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAC-AGCTTCATCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGTTTC 179 Query 228 TGTTGGAGATGGATTCTCTTTTAGTGGAGGGAAGTATTCGGATCAACCGAGTCCATCAGA 287 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 180 TGTTGGAGATGGATTCTCTTTTAGTGGAGGGAAGTATTCAGATCAACCGAGTCCATCAGA 239 Query 288 TGAGTGGTTGAAGCAAGGGAAATGGGTTAAAGCTCATAGAGTTGGCGGCTCTGGTGTAGA 347 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 240 TGAGTGGTTGAAGCAAGGGAAATGGGTTAAAGCTCATAGAGTTGGTGGCTCTGGTGTAGA 299 Query 348 AGCAAAAGATCCGATTTTCGGATTAACAATGGGAGCTAGCTCTCAAGCTTCAAAAGATCT 407 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 300 AGCAAAAGATCCGATTTTCGGGCTAACAATGGGAGCTAGCTCTCAAGCTTCAAAAGATCT 359 Query 408 TTTCCGATGGTTTAGTGTAGAATCCGGGAGTGTAGATAGTCCTCCTGTTATACTCATCCA 467 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTTTCGATGGTTTTGTGTAGAATCCGGGAGTGTAGATAGTCCTCCTGTTATACTCATCCA 419 Query 468 TGGATTCCCATCTCAGGCTTATTCTTACCGGAAAACTATTCCCGTTCTTTCAAAGAACTA 527 |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| || Sbjct 420 TGGATTCCCATCCCAGGCTTACTCTTACCGGAAAACTCTTCCCGTTCTTTCAAAGAATTA 479 Query 528 CCGCGCCATTGCTTTCGATTGGCTAGGATTTGGATTTTCTGACAAGCCTCAGGCTGGATA 587 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CCGCGCCATTGCTTTTGATTGGCTAGGATTTGGATTTTCTGACAAGCCTCAGGCTGGATA 539 Query 588 TGGATTCAACTATACAATGGACGAGTTTGTTTCTTCGCTGGAGTCATTCATTGACGAAGT 647 |||||| ||||||||||||||||||||||| || ||||| || ||||||||||| ||||| Sbjct 540 TGGATTTAACTATACAATGGACGAGTTTGTATCGTCGCTTGAATCATTCATTGATGAAGT 599 Query 648 AACTACTAGTAAGGTGTCACTTGTGGTGCAGGGCTACTTCTCAGCTGCTGTTGTAAAATA 707 |||||| |||||||||||||||||||||||||||||||||||| | ||||| |||||||| Sbjct 600 AACTACCAGTAAGGTGTCACTTGTGGTGCAGGGCTACTTCTCAACCGCTGTCGTAAAATA 659 Query 708 TGCAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTCTCACACC 767 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 660 TGCAAGAAACCGACCTGACAAGATCAAGAATCTTATACTCTTGAATCCTCCTCTCACACC 719 Query 768 AGAACATGCTAAACTTCCATCAACATTGTCTGTATTCAGCAACTTTTTGCTTGGGGAAAT 827 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 720 CGAACATGCTAAACTTCCATCAACATTGTCTATATTCAGCAACTTTTTGCTTGGGGAGAT 779 Query 828 TTTCTCTCAGGATCCTCTAAGAGCAAGTGACAAGCCTTTAACAAGCTGTGGTCCTTACAA 887 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 780 TTTCTCTCAGGATCCTCTAAGAGCAAGTGACAAGCCTTTGACAAGCTGCGGTCCTTACAA 839 Query 888 AATGAAAGAAGACGATGCAATGGTTTATCGAAGACCTTATCTTACCTCAGGTTCTTCTGG 947 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 840 AATGAAAGAAGACGATGCAATGGTTTACCGAAGACCTTATCTCACCTCAGGTTCTTCTGG 899 Query 948 TTTTGCACTTAATGCCATAAGCAGGTCCATGAAGAAAGAACTTAAGAAATATGCAGAAGA 1007 |||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 900 TTTTGCCCTTAACGCCATCAGCAGGTCCATGAAGAAGGAACTTAAGAAATATGCAGAAGA 959 Query 1008 GATGAGGACATCACTAATGGATAAAAACTGGAAAATCCCGATCACCGTGTGCTGGGGACA 1067 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GATGAGGACATCACTAATGGATAAAAACTGGAAAATCCCGATCACCGTGTGCTGGGGACA 1019 Query 1068 ACGAGATAGGTGGTTAAGCTATGAAGGAGTTGAAGAGTTCTGCAAGAGTTCGGGACACAA 1127 |||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1020 ACGAGACAGGTGGCTGAGCTATGAGGGAGTTGAAGAGTTCTGCAAGAGTTCGGGACACAA 1079 Query 1128 CCTCGTCGAATTACCAAATGCTGGCCATCATGTACAAGAAGATTGTGGAGAGGAACTTGG 1187 ||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1080 CCTTGTCGAACTGCCAAATGCAGGCCATCATGTACAAGAAGATTGTGGAGAGGAACTTGG 1139 Query 1188 AGGAATAATCTCAAGAATCATAAGCAAATCTGCTCTATTCTAA 1230 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 AGGAATAATCTCAAGAATCATAAGCAAATCTGCTCTATTCTAA 1182 > Ahg925760 jgi|Araly1|925760|scaffold_201321.1 Length=329 Score = 385 bits (208), Expect = 6e-106 Identities = 233/245 (95%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 46 AAAATGGCGGTTCATATTCACAACCCTAACTTTTTCCACACTCATCATCTCCGAGCATCT 105 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 21 AAAATGGCGGTTCATATTCACAACCCTAACTTTTTCAACACTCATCATCTCCGATCATCT 80 Query 106 CTTACTTCTGCC-TCTGCATCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAA 164 ||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 81 CTTACTTCT-CCTTCTCCTTCACCTTCCTCATATCTCTTTCATAGACACTCTGCTTCAAA 139 Query 165 GTATCCTAGCTTCCTCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGT 224 ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 ATATCCAAACTTCATCTGCAAATCCAATAACAAAGATGACTATCTCATTGATGCTCCTGT 199 Query 225 TTCTGTTGGAGATGGATTCTCTTTTAGTGGAGGGAAGTATTCGGATCAACCGAGTCCATC 284 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 200 TTCTGTTGGAGATGGATTCTCTTTTAGTGAAGGGAAGTATTCGGATCAACCGAGTCCATC 259 Query 285 AGATG 289 | ||| Sbjct 260 AAATG 264 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55764118680 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5