BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G12900.1 Length=724 Score E Sequences producing significant alignments: (Bits) Value Ahg497111 jgi|Araly1|497111|fgenesh2_kg.9__76__AT4G12900.1 1061 0.0 Ahg497114 jgi|Araly1|497114|fgenesh2_kg.9__79__AT4G12870.1 610 4e-174 Ahg333043 jgi|Araly1|333043|fgenesh1_pm.C_scaffold_9000071 551 3e-156 Ahg497109 jgi|Araly1|497109|fgenesh2_kg.9__74__AT4G12960.1 337 8e-92 > Ahg497111 jgi|Araly1|497111|fgenesh2_kg.9__76__AT4G12900.1 Length=693 Score = 1061 bits (574), Expect = 0.0 Identities = 659/698 (94%), Gaps = 13/698 (2%) Strand=Plus/Plus Query 10 TCTTCTTCGTTGGCTTCTTCAACC-AAGCTTGTATTCTTTGCTTGCCTCCTCCTATTCAC 68 |||||||| || |||| |||||| || |||| ||||| |||||||||||||||||||| Sbjct 4 TCTTCTTC-TT--CTTCATCAACCAAATTTTGT-TTCTTCGCTTGCCTCCTCCTATTCAC 59 Query 69 ATTCTCATCACACAATCTCGTGGCTGGAGAATCCGACAAAGTAAAGCTCAATCTTTACTA 128 ||| | |||||||| |||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 60 ATT-T--TCACACAACCTCGTGGCTGGACAATCCGACAAAGTTAAGCTCAATCTTTACTA 116 Query 129 TGAATCACTTTGTCCTTCTTGTCAGAATTTCATCGTCCATCATCTAGGCAAAATCTTTAA 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 TGAATCACTTTGTCCTTCTTGTCAGAATTTCATCGTCCATCATCTAGGCAAAATCTTTAA 176 Query 189 CACTGATCTCCACACAATCACCGATCTCAAGCTCATTCCATTCGGTAACGCCCATGTCTC 248 ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 177 CACCGATCTCCACACAATCACCGATCTCAAACTCATTCCATTCGGTAACGCCCATGTTTC 236 Query 249 CGATGATCTTACCGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGA 308 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 CGATAATCTTACCGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGA 296 Query 309 AGCTTGCGCCATAAGAACTTGGCCTAATCAGAGATTGCACTACAAGTTCATTCGGTGCGT 368 |||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || Sbjct 297 AGCTTGTGCCATAAGAACTTGGCCCAATCAGAGATTGCACTATAAGTTCATACGGTGTGT 356 Query 369 TGAAACTAACACGAATGCTTGGGAATCTTGTGTTAAGAAGTATGGAGGTGAAAAAGCGAT 428 ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| Sbjct 357 TGAAACTAACACGAATGCTTGGGAATCATGTGTTAAGAAGTATGGAGGCGAGAAAGCGAT 416 Query 429 AAATGATTGTTACAATGGTGATCTCTCTAAAGAGCTGATACTTGGGTATGCAAACCAGAC 488 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 417 TAATGATTGTTACAATGGTGATCTTTCTAAAGAGCTGATACTTGGGTATGCAAACCAGAC 476 Query 489 ATTGAGTTTGAAACCGGAGCATAAATACGTACCATGGATGACACTCAACGGCGAACCACT 548 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 ATTAAGTTTGAAACCGGAGCATAAATACGTACCATGGATGACACTCAACGGCGAACCACT 536 Query 549 CTACGAAAATATTGGTGATTTTGTGGACTTAGTCTGCAAAGCGTATAAAGGAAAGGCTGC 608 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 537 CTACGAAAATATTGGTGATTTTGTGGACTTAGTCTGCAAAGCTTATAAAGGAAAGGCTGC 596 Query 609 TCTCCCTA-AACTCTGTTATTCCTCTGTCTTGTCTCAGAGGACAATGATG---CTTGAAT 664 |||||| | ||||||||||||||||||||||||| |||||||||||| || ||||||| Sbjct 597 TCTCCC-ACAACTCTGTTATTCCTCTGTCTTGTCACAGAGGACAATGTTGAAGCTTGAAT 655 Query 665 TCTCCTATGTTGATGAAGCTATCAATCACTAAGTTAAT 702 |||||||||||||||||||||| ||||||||||||||| Sbjct 656 TCTCCTATGTTGATGAAGCTATAAATCACTAAGTTAAT 693 > Ahg497114 jgi|Araly1|497114|fgenesh2_kg.9__79__AT4G12870.1 Length=768 Score = 610 bits (330), Expect = 4e-174 Identities = 594/719 (83%), Gaps = 28/719 (4%) Strand=Plus/Plus Query 12 TTCTTCGTTGGCTTCTTCAACCAAGCTTGTATTCTTTGCTTGCCTCCTCCTATTCACATT 71 |||||| || ||||||||||||||||||| |||||| ||||| | | || |||||||| Sbjct 34 TTCTTC-TT--CTTCTTCAACCAAGCTTGTCTTCTTTACTTGCTTTGTTCTGTTCACATT 90 Query 72 CTCATCACACAATCTCGTGGCTGGAGAATCCGACAAAGTAAAGCTCAATCTTTACTATGA 131 |||| ||| || ||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 91 CTCA-GACA-AA-CTCGTTGCTGGAGAATCCGACAAAGTTCAGCTCAATCTTTACTATGA 147 Query 132 ATCACTTTGTCCTTCTTGTCAGA-ATTTCATCGTCCATCATCTAGGCAAAATCTTTAACA 190 |||||||||||| |||||||| ||| ||||||| || | |||| |||||||||| || Sbjct 148 ATCACTTTGTCCCGGTTGTCAGAGATT-CATCGTCGATGAACTAGTCAAAATCTTTGACT 206 Query 191 CTGATCTCCACACAATCACCGATCTCAAGCTCATTCCATTCGGTAACGCCCATGTCTCCG 250 | |||||| | |||||||||||| |||||||| ||||||||||||| ||| | |||||| Sbjct 207 CCGATCTCGATACAATCACCGATGTCAAGCTCGTTCCATTCGGTAATGCCAAAGTCTCCA 266 Query 251 ATGATCTTACCGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGAAG 310 || |||| || |||| |||||||||||||||||| ||||||||| ||||||| ||||||| Sbjct 267 ATAATCTGACTGTCATTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCTCTTGAAG 326 Query 311 CTTGCGCCATAAGA-ACTTGGCCTAATCAGAGATTGCACTACAAGTTCATTCGGTGCGTT 369 |||||| ||||| | |||| |||||| |||| |||||| ||| ||||||| ||||||||| Sbjct 327 CTTGCGTCATAA-ACACTTTGCCTAACCAGAAATTGCAGTACCAGTTCATACGGTGCGTT 385 Query 370 GAAA-CTA-ACACGAATGCTTGGGAATCTTG-TGTT-AA--GAAGTATGGAGGTGAAAAA 423 |||| ||| || | || || ||||||| | |||| || | | ||||||| ||| ||| Sbjct 386 GAAAACTATAC-CAAAAACT-GGGAATCATCATGTTTAAATGGA-TATGGAGATGAGAAA 442 Query 424 GCGATAAATGATTGTTACAATGGTGATCTCTCTAAAGAGCTGATACTTGGGTATGCAAAC 483 || || |||||||||||||| |||||||||||||| |||| ||||||||||||||||| Sbjct 443 GCCATCAATGATTGTTACAACAGTGATCTCTCTAAAAAGCTCATACTTGGGTATGCAAAA 502 Query 484 CAGACATTGAGTTTGAAA-CCGGAGCATAAATACGTACCATGGATGACACTCAACGGCGA 542 || || | |||| | ||| ||||| ||| ||| |||||||||| | ||||||||| || | Sbjct 503 CAAACCTCGAGTCT-AAAGCCGGAACATGAATTCGTACCATGGGTCACACTCAACAGCAA 561 Query 543 ACCACTCTACGAA-AATATTGGTGATTTTGTGGACTTAGTCTGCAAAGCGTATAAAGGAA 601 ||||||||| | ||| | | |||| | |||| | |||||||||||| || ||||||| Sbjct 562 ACCACTCTAT-ACTAATCTAGATGATCTGGTGGGCCAAGTCTGCAAAGCTTACAAAGGAA 620 Query 602 AGGCTGCTCTCCCTAAACTCTGTTA-TTCCTCTGTCTTGTCTCAGAGGACAATG---ATG 657 || || | ||||| ||| ||||| | |||||||| |||||| || ||| |||| | | Sbjct 621 AGACTCCACTCCCAAAAATCTGT-AGTTCCTCTGCCTTGTCGGAGTGGAAAATGTCGAAG 679 Query 658 CTTGAATTCTCCTATGTTGATGAAGCTATCAATCACTAAGTTAATTATCATACTACTAA 716 ||||||||||| ||||| |||||| ||||||||||||||||||||||||| || ||||| Sbjct 680 CTTGAATTCTCGTATGTCGATGAAACTATCAATCACTAAGTTAATTATCAAACCACTAA 738 > Ahg333043 jgi|Araly1|333043|fgenesh1_pm.C_scaffold_9000071 Length=699 Score = 551 bits (298), Expect = 3e-156 Identities = 544/661 (82%), Gaps = 23/661 (3%) Strand=Plus/Plus Query 46 TTT-GCTTGCCTCCTCCTATTCACATTCTC-ATCACACAATC-TCGTGGCTGGAG-AATC 101 ||| ||||||||| | || ||||||||||| | || || || |||||||| ||| |||| Sbjct 48 TTTAGCTTGCCTCTTTCTGTTCACATTCTCAAACA-AC-CTCATCGTGGCT-GAGAAATC 104 Query 102 CGACAAAGTAAAGCTCAATCTTTACTATGAATCACTTTGTCCTTCTTGTCAGAATTTCAT 161 ||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 105 CGACAAAGTGAAGCTCAATCTTTACTATGAATCACTTTGTCCCTATTGTCAGAATTTCAT 164 Query 162 CGTCCATCATCTAGGCAAAATCTTTAACACTGATCTCCACACAATCACCGATCTCAAGCT 221 ||||||| ||||||| ||||||||| || | ||||||| || |||||| ||||||||||| Sbjct 165 CGTCCATGATCTAGGTAAAATCTTTGACTCCGATCTCCTCAAAATCACTGATCTCAAGCT 224 Query 222 CATTCCATTCGGTAACGCCCATGTCTCCGATGATCTTACCGTCACTTGCCAGCATGGTGA 281 |||||||||||||||| ||||||||| || |||| || | ||||||||||||||||| Sbjct 225 TGTTCCATTCGGTAACGCTCATGTCTCCAATAATCTGACTATTACTTGCCAGCATGGTGA 284 Query 282 AGAAGAATGCAAATTAAACGCCCTTGAAGCTTGCGCCATAAGAACTTGGCCTAATCAGAG 341 || ||||||||| |||||||||| |||||||||| |||||||||| ||| ||| || Sbjct 285 GGAGGAATGCAAACTAAACGCCCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGAA 344 Query 342 ATTGCACTACAAGTTCATTCGGTGCGTTGAAACTAACACGAATGCTTGGGAATCTTGTGT 401 |||||| ||||||||||| | ||||||||||| | ||||||| |||| ||| ||||| Sbjct 345 ATTGCAATACAAGTTCATACAGTGCGTTGAAAAGGATACGAATGAGTGGGGATCATGTGT 404 Query 402 TAAGAAGTATGGAGGTGAAAAAGCGATAAATGATTGTTACAATGGTGATCTCTCTAAAGA 461 ||| || | |||| |||| ||| | || |||||||||||||||||||||||||||||| | Sbjct 405 TAAAAAATCTGGACGTGAGAAATCCATCAATGATTGTTACAATGGTGATCTCTCTAAAAA 464 Query 462 GCTGATACTTGGGTATGCAAACCAGACATTGAGTTTGAAACCGGAGCATAAATACGTACC 521 ||||||| ||||||||||||| || || | ||||||||| || | ||| ||||||| || Sbjct 465 GCTGATATTTGGGTATGCAAAACAAACCTCGAGTTTGAAGCCTAAACATGAATACGTTCC 524 Query 522 ATGGATGACACTCAACGGCGAACCACTCTACGAAAAT-ATTGGTGATTTTGT-G-GACTT 578 |||| | |||||||||||| |||||||||| || ||| | | |||| || | | | Sbjct 525 ATGGGTCACACTCAACGGCAAACCACTCTATGATAATTACCA-TAATTTGGTTGCG-CAA 582 Query 579 AGTCTGCAAAGCGTATAAAGGAAAGGCTGCTCTCCCTAAACTCTGTTA-TTCCTCTGTCT 637 | ||||||||||||| |||||||||||| || || ||| | || | |||||||| | Sbjct 583 A-TCTGCAAAGCGTACAAAGGAAAGGCT-CTA-CCA-AAATTATGC-AGTTCCTCTGCCC 637 Query 638 TGTCTCAGAGGACAA-TG---ATGCTTGAATTCTCCTATGTTGATGAAGCTATCAATCAC 693 ||| | |||||| || || | |||| || |||||||||| ||||||| |||||||||| Sbjct 638 TGTTTGAGAGGA-AAGTGTCGAAGCTTCAAGTCTCCTATGTAGATGAAGTTATCAATCAC 696 Query 694 T 694 | Sbjct 697 T 697 > Ahg497109 jgi|Araly1|497109|fgenesh2_kg.9__74__AT4G12960.1 Length=755 Score = 337 bits (182), Expect = 8e-92 Identities = 497/640 (78%), Gaps = 57/640 (9%) Strand=Plus/Plus Query 24 TTCTTCAACCAAGCTTGTATTCTTTGCTTGCCTCCTCCT-ATTCACATTCTCATCACACA 82 ||||| |||||||||||| || |||||||| ||||||| || ||||||||| | | | Sbjct 41 TTCTTTAACCAAGCTTGTGTTATTTGCTTGTGTCCTCCTGCTT-ACATTCTCA-GA-A-A 96 Query 83 ATCTCGTGGCTGGAGAATCCGACAAAGTAAAGCTCAATCTTTACTATGAATCACTTTGTC 142 | || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 97 ACCTTGTGGCTGGAGATTCCGACAAAGTGAAGCTCAATCTTTACTATGAATCACTTTGTC 156 Query 143 CTTCTTGTCAGAATTTCATCGTCCATCATCTAGGCAAAATCTTTAAC-ACTGATCTCCAC 201 | ||||||| | ||||||||| || ||||| | ||||||||| || | ||||||| || Sbjct 157 CCGGTTGTCAGGAGTTCATCGTCGATGATCTAAGTAAAATCTTTGACTA-TGATCTCTAC 215 Query 202 ACAATCAC-CGATCTCAAGCTCATTCCATTCGGTAACGCCCATGTCTCCGATGATCTTAC 260 ||||| || | |||||||||| ||||||| ||||| ||| | |||||||| |||| || Sbjct 216 ACAATTACTC-ATCTCAAGCTGGTTCCATTTGGTAATGCCAAACTCTCCGATAATCTGAC 274 Query 261 CGTCACTTGCCAGCATGGTGAAGAAGAATGCAAATTAAACGCCCTTGAAGCTTGCGCCAT 320 |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || Sbjct 275 TATCACTTGCCAGCATGGTGAAGAGGAATGCAAACTAAACGCCCTTGAAGCTTGCGCTAT 334 Query 321 AAGAACTTGGCCTAATCAGAGATTGCACTACAAGTTCATTCGGTGCGTTGAAACTAACAC 380 |||||| ||||| ||| || || | || |||| | | | | | ||| Sbjct 335 AAGAACATGGCCCGATCCGA--TT----T-----TT-ATTCAG-G-G---A--C-AACT- 373 Query 381 GAATGCTTGGGAAT--C-TTGTGTTAAG-AAGTATGGAGGTGAAAAAGCGATAAATGATT 436 ||||| || | ||| | || || || || | |||| |||| ||||| || ||||||| Sbjct 374 GAATG-TTAG-AATTTCATTTTGGCAAATAACTCTGGACGTGAGAAAGCTATCAATGATT 431 Query 437 GTTACAATGGTGATCTCTCTA-AA-G--AGCTGATACTTGGGTATGCAAACCAGAC-ATT 491 |||| ||||||||||| | | || | | ||||||||| |||| |||| ||| || || Sbjct 432 GTTAAAATGGTGATCTTTAGAGAAAGGTACCTGATACTTAGGTACGCAACCCAAACCATA 491 Query 492 GAGTTTGAAACCGG-AGCATAAATACGTACCATGGATGACACTCAACGGCGAACCACTC- 549 |||||||| ||| | ||| |||| ||||||||| | |||||||||||| |||||||| Sbjct 492 -AGTTTGAAGCCGCCA-CATGAATATGTACCATGGGTCACACTCAACGGCAAACCACTCG 549 Query 550 -T-A---CG-A-AAA-TATTGG-TGATTTTGTGGACTTAG-TCTGCAAAGCGTATAAAGG 599 | | || | ||| ||| || |||| | ||| || | |||||||||| || ||||| Sbjct 550 ATGATAACGTACAAAGTAT-GGATGATCTCATGG-CTCAAATCTGCAAAGCATACAAAGG 607 Query 600 AAAGGCTGCTCTCCCTAAACTCTGTTATTCCTCTGTCTTG 639 |||| |||||||||| ||| | || |||| |||| |||| Sbjct 608 AAAGACTGCTCTCCCAAAAGTTTGCAATTCATCTGCCTTG 647 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26647918983 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5