BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13030.1 Length=1722 Score E Sequences producing significant alignments: (Bits) Value Ahg497092 jgi|Araly1|497092|fgenesh2_kg.9__57__AT4G13030.1 2093 0.0 > Ahg497092 jgi|Araly1|497092|fgenesh2_kg.9__57__AT4G13030.1 Length=1594 Score = 2093 bits (1133), Expect = 0.0 Identities = 1463/1619 (90%), Gaps = 36/1619 (2%) Strand=Plus/Plus Query 59 AAAACGAAGAACAAGTAAG-AAGCTTGTAGCCATGGGTGGTGATACTTTCAAAGATGATG 117 |||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| Sbjct 1 AAAACGAAGAACAAATAAGAAACCTTGTAGCCATGGGTGGTGATACTTTCAAAGATGATT 60 Query 118 TTGTAGATGAAGAATCTTCAAGATCATCATCATCATCTCCTTGTTCTTGTTGTTTCAGTG 177 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 61 TTGTAGATGAAGAATCTTCAAG---ATCATCATCATCTCCTTGTTTTTGTTGTTTCAGTG 117 Query 178 ATGATTTAGGGTTTAAGGATGATGTTTCTGAAGAGAATTTCACCAATTTCTCTAATCATG 237 |||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||| Sbjct 118 ATGATTCAGGGTTTAAGGATGATGTTTCTGAAGATAATTTCGCAAATTTCTCTAATCATG 177 Query 238 TTACTGATTTGAGAAGGAGAGAAAAAGCTTACCAAGAGATTCTTCAAAGTCATGATCTTT 297 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 178 TTACTGATTTGAGAAGAAGAGAAAAATCTTACCAAGAGATTCTTCAAAGTCATGATCTTT 237 Query 298 TGCTTAGAACCAGCAAACGGAAACTTAGACAAGCCAGAAATGAGATTTTGAGCTATACTC 357 |||| | || ||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 238 TGCTCAAAAGCAGCAAACGGAAACTTAGACAAGCCAGAAATGAAATTTTGAGATATACTC 297 Query 358 CTGGATCATGGTCTGATGTCAAGTTGAGTGATTACAATATTCCAAAAACGACATCGATCA 417 ||||||||||||||||||| || |||| |||||| || ||||||| ||||||||||||| Sbjct 298 CTGGATCATGGTCTGATGTGAAACTGAGCGATTACGATGTTCCAAAGACGACATCGATCA 357 Query 418 TGCTAGTTGGTCCGAAAGGGGCTGGGAAGAGTAGCCTTGTTAATAAGATTACAAGAGTGA 477 || |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| Sbjct 358 TGTTAGTTGGTCCGAAAGGAGCCGGGAAGAGTAGCCTTGTTAATAAGATTTCAAGAGTGA 417 Query 478 TCGAAGACGACGCGTTTCTCCTAGATAGAGCTCAAGAATCATTTGGTACCCCGTCTAAAG 537 | |||||||||| |||| ||| || |||||||||||||||||||||||| | |||||||| Sbjct 418 TTGAAGACGACGAGTTTTTCCCAGCTAGAGCTCAAGAATCATTTGGTACGCAGTCTAAAG 477 Query 538 GAGGAACATACTTTGTTCAGGAGTATATGATCTCGAGAGGAGGTTCCGCTTCATTTTGCC 597 ||||||||| |||||||||||| ||||||||| | ||||||||||| ||||| ||||||| Sbjct 478 GAGGAACATTCTTTGTTCAGGAATATATGATCCCAAGAGGAGGTTCTGCTTCCTTTTGCC 537 Query 598 TATATGATACGCGTGGATTGAGCCGTATATCATCGTCTGATAACACTAGTATGATTGAGC 657 ||||||| |||||||| ||||||| ||| ||||| ||||||||||||||||||||||||| Sbjct 538 TATATGACACGCGTGGCTTGAGCCATATCTCATCATCTGATAACACTAGTATGATTGAGC 597 Query 658 AATGGATGACAAGGGGCGTGCTTCACGGCGAACCTGTCATCTGGGCATCTGATAGCTCGG 717 | |||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct 598 AGTGGATGACAAAAGGCGTGCATCACGGCGAACCTGTCATCTGGACGTCTGATAGCTCGG 657 Query 718 ATTTAAAGGATAGACTCATCCGAGATGGTGGTACCGGTTATGAGAGAAGGAAAGTGAATT 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ATTTAAAGGATAGACTCATCCGAGATGGTGGTACCGGTTATGAGAGAAGGAAAGTGAATT 717 Query 778 C-GATTATCTTTGTTGTTAATGCGGTCGAAATCTTGAAATCGATGGAATGTGAAACGAGC 836 | | ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 718 CCG-TTATCTTTGTTATTAATGCGGTCGAAATCTTGAAATCGATGGAATGTGAAACAAGC 776 Query 837 TATGCTTCG-ATGATAACCACGGCCTTTAACTCTCCGATACTATTGTTTAAAGATGATAA 895 |||||| | |||||| ||||||||||||||| |||| |||| | ||||||||||| || Sbjct 777 TATGCT-CATATGATATCCACGGCCTTTAACTGTCCGTTACTGTCATTTAAAGATGACAA 835 Query 896 GCCAGCAGTCGTTATGACTCATGGAGATATGCTTTCACGCGAGGAACGTGCCCGAGTACG 955 ||||||||| |||||||||||||||||||||||||||| ||||| ||||| ||||| || Sbjct 836 GCCAGCAGTAGTTATGACTCATGGAGATATGCTTTCACTAGAGGACCGTGCTCGAGTTCG 895 Query 956 AGTTTTCCTTGGAGAACTTCTCGGTATCCCTCCTCACAAACAGATATTTGACATTCCAGA 1015 |||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| Sbjct 896 AGTTTTCCTTGGAGAACTTCTCGGTATCCCACCTGACAAACAGATATTCGACATTCCAGA 955 Query 1016 AAGCCGGGACACAGCCACCGCGATAACAATCTGCAACTTGCTATGCTATAGTCTTCAACA 1075 ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | || Sbjct 956 AAGCCGGGACATAGCCACCGCGCTAACAATCTGCAACTTGCTATGCTATAGTCTTGACCA 1015 Query 1076 TGCTGATAAGAATTTTGTGTTTCTTCCCAAAAAGAACTTCACTATATCCAAGGTGGGAGG 1135 |||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||| Sbjct 1016 TGCTGATAAGAATTTTGTGTTTCTTCCCAAAAGGAACTTCACCATATCAAAGGTTGGAGG 1075 Query 1136 AGGAGGCCTCACAAAATGGATCAGCTTATTAGACATAATATCAATTGCTCTGGTTTTATT 1195 ||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| Sbjct 1076 AGGAGGCCTCACAAAATGGATCATCTTATTAGACATAATATCAATTGGTCTGATTTTATT 1135 Query 1196 CATGGCATTGGCGTCAATCTGGTTTGTTACTCATAATCCCGTAAGCGGCCAAAAATTAGC 1255 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1136 CATGGCATTGGCTTCAATCTGGGTTGTTACTCATAATCCCGTAAGCGGCCAAAAATTAGC 1195 Query 1256 TAATGAGACTCAGCAAAAACTGCTTAAATTCCCAAGTCCATGGTTAAATAACCTCACACA 1315 ||||| || |||| |||||||||| ||||||||||||| ||||||| ||||||||||| Sbjct 1196 CCATGAGGCTGAGCACAAACTGCTTACATTCCCAAGTCCACGGTTAAACAACCTCACACA 1255 Query 1316 TAAGGCAAAGCCGATGCGTCGCTTTGGGCCTAAGCGGATCATTAAAGGTCCAAACCTTGC 1375 | |||| ||||||| |||||| | |||||| ||||| ||||| |||||||| |||||| Sbjct 1256 TGAGGCCCAGCCGATACGTCGCATAGGGCCTCAGCGGGTCATTGGAGGTCCAATCCTTGC 1315 Query 1376 ATGCGTTCAACATCCTAAGTCTGAGTTTGTGCCTGAAAGTGAGCCAATAAGCATTGATTT 1435 |||||||||||||||||||||||||| ||||||||| ||||||| | || |||||||||| Sbjct 1316 ATGCGTTCAACATCCTAAGTCTGAGTCTGTGCCTGATAGTGAGC-A-TA-GCATTGATTT 1372 Query 1436 GCATATAGCTCGACGCTTATGGTTCAACGAAGAGCAA-GTGGCCGAGGCCGAACCAAGCT 1494 ||| ||||| | ||||||||||||| |||||| | || ||| |||||| ||||||||||| Sbjct 1373 GCAAATAGCGCAACGCTTATGGTTCGACGAAG-GTAAAGTGACCGAGGTCGAACCAAGCT 1431 Query 1495 TTGATTGGCGAACTACTCGACGCTTGTGGTATGTTGAGTGAAA-TGTATGTGAGCGTCAG 1553 |||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||||||| | Sbjct 1432 TTGACTGGCGAACAACTCGACGCTTGTGGTACGTTGAATGAAAATGTATGTGAGCGTTAA 1491 Query 1554 CATCTTTAATTATAAGCTTAAATAAGTTTGATAGTGTTTAAACTAGTAATATAAAACAAG 1613 ||||||||| | | || | || || | | | | ||||||||||||||||||||| Sbjct 1492 CATCTTTAA--A---GTTTGA-TA-GT--G-T-G-G---AAACTAGTAATATAAAACAAG 1536 Query 1614 GT-----GTTTCTTAAAAAATCTGTTAGGTCATGGTGt-ttttttttGTTTTAATTAAA 1666 | ||||||||||||||||||| ||||||||||| |||||||| ||||||||||| Sbjct 1537 TTCTTTTGTTTCTTAAAAAATCTGTTTGGTCATGGTGTCTTTTTTTT-TTTTAATTAAA 1594 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64601055520 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5