BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13345.1 Length=1995 Score E Sequences producing significant alignments: (Bits) Value Ahg497050 jgi|Araly1|497050|fgenesh2_kg.9__15__AT4G13345.1 2237 0.0 > Ahg497050 jgi|Araly1|497050|fgenesh2_kg.9__15__AT4G13345.1 Length=1749 Score = 2237 bits (1211), Expect = 0.0 Identities = 1412/1505 (94%), Gaps = 30/1505 (2%) Strand=Plus/Plus Query 475 TATTTTTTGCCAAGGATCTATATATGATCTTCCAATGTCATGAAGAAGAGAGAGTCTGCT 534 |||| ||||||||||||| |||||||||||||||||||||||||| |||||| |||| Sbjct 269 TATTATTTGCCAAGGATC----TATGATCTTCCAATGTCATGAAGAAGGGAGAGTTTGCT 324 Query 535 -AGATTTAAGGACTTATGGAAACCGGTACAAGCATTGACAACACTGGCTATGAAGGAATC 593 || ||||| |||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct 325 AAG-TTTAAAGACTTATGGAGACCGGTACAAGCATTGACAAGAATGGCTATGAAGGAATA 383 Query 594 AAGAACGGTTCATGGTTTATCCAGTTCCGTAATGGCTGCAATCCATGGATGGCTAGATAT 653 ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 384 AAGAACGGTTCGTGGTTTAGCCAGTTTCGTAATGGCTGCAATCCATGGATGGCTAGATAT 443 Query 654 GTGTACGGTCTAATATTCCTCTTGGCAAATCTGCTT-GCTTGGGCCTTGCGTGATTATGG 712 ||||||||||| |||||||||||||||||| || || |||||||||||||| |||||||| Sbjct 444 GTGTACGGTCTGATATTCCTCTTGGCAAATTTG-TTGGCTTGGGCCTTGCGCGATTATGG 502 Query 713 CCGAGGCGCCTTGACCGAAATGAGAAAATTCAAGAATTGTAAAGAAGGTGGAGACTGTTT 772 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 503 CCGAGGTGCCTTGACCGAGATGAGAAAATTCAAGAATTGTAAAGAAGGTGGAGAGTGTTT 562 Query 773 AGGGACGGAAGGAGTTTTACGAGTTAGCTTCGGATGTTTTTTGTTCTATTTCATTATGTT 832 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 563 GGGGACGGAAGGAGTTTTACGAGTAAGCTTGGGATGTTTTTTGTTCTATTTCATTATGTT 622 Query 833 TCTTTCAACCGTTGGGACATCAAAGACGCATTCATCGAGAGATAAATGGCATTCAGGATG 892 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 623 TCTTTCAACCGTTGGCACATCAAAGACGAATTCATCGAGAGATAAATGGCATTCAGGATG 682 Query 893 GTGGTTTGCTAAGCTTTTCATGTTGCTTGGCTTAACCATCTTCCCCTTTTTGTTGCCTTC 952 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 683 GTGGTTTGCTAAGCTTTTCATGTGGCTTGGCTTAACCATCTTCCCCTTTTTGTTGCCTTC 742 Query 953 TTCCATTATTCAGTTTTACGGGGAGATTGCCCATTTTGGTGCAGGGGTCTTTCTCCTAAT 1012 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 743 TTCCATTATTCAGCTTTACGGGGAGATTGCCCATTTTGGTGCAGGGGTATTTCTCCTAAT 802 Query 1013 TCAGCTGATTAGTATCATTAGTTTCATTACATGGCTCAATGAATGTTTCCAAGCACAAAA 1072 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 803 TCAGCTCATTAGTATCATTAGTTTCATTACATGGCTCAATGAATGCTTCCAAGCACAAAA 862 Query 1073 AGATGCAGAAAGATGCCATGTCCATGTAATGCTACTAGCGACTACTGCGTACACCGTGTG 1132 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 863 AGATGCAGAAAGATGCCATGTCCATGTGATGCTACTAGCGACTACTGCGTACACCGTATG 922 Query 1133 CATATTAGGGGTTATTTTGATGTACATTTGGTATGTGCCTGAACCATCATGCCTTCTCAA 1192 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 923 CATATTAGGGGTTATTTTGATGTACATTTGGTATGTGCCTGATCCATCATGCCTTCTCAA 982 Query 1193 CATATTTTTCATCACATGGACTTTGTTCCTCATCCAACTCATGACAAGTATCTCTCTCCA 1252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 983 CATATTTTTCATCACATGGACTTTGTTCCTCATCCAACTCATGACAAGTATCTCTCTCCA 1042 Query 1253 CCCCAAAATAAATGCTGGATTCTTGACTCCAGCGCTTATGGGGCTTTACGTTGTGTTTAT 1312 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1043 CCCCAAAATAAATGCTGGATTCTTGACTCCAGCACTTATGGGGCTTTATGTTGTGTTTAT 1102 Query 1313 CTGCTGGTGCGCCATTCGAAGTGAGCCTGTAGGAGAAACTTGCAA-CAGAAAAGCAGAAG 1371 ||||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||| Sbjct 1103 CTGCTGGTGCGCCATTCGAAGTGAGCCAGTAGGAGAAACTTGCAATC-GAAAAGCCGAAG 1161 Query 1372 GTTCTAGTAGAACAGACTGGCTTACCATCATAAGCTTTGTTGTTGCACTGCTTGCAATGG 1431 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1162 GTTCTAGCAGAACAGACTGGCTTACCATCATAAGCTTTGTTGTTGCACTGGTTGCAATGG 1221 Query 1432 TAATAGCGACATTCTCGACGGGAGTAGATTCACAATGTTTTCAGTTTAGAAAAGATGAGA 1491 |||| ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||| Sbjct 1222 TAATTGCGACATTCTCCACGGGCGTAGATTCCCAATGTTTCCAGTTTAGAAAAGATGAGA 1281 Query 1492 ATCATGAGGAAGATGCAATTCCTTACGGATACGGATTCTTTCATTTTGTGTTTGCTACTG 1551 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | Sbjct 1282 ATCATGAGGAAGATGCAATTCCTTACGGATATGGATTCTTCCATTTTGTGTTTGCTACCG 1341 Query 1552 GAGCAATGTACTTTGCAATGCTACTTGTTGGTTGGAACATTCACCATTCCATGAAAAAGT 1611 |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1342 GAGCAATGTACTTTGCGATGCTACTTGTTGGCTGGAACATTCATCATTCCATGAAAAAGT 1401 Query 1612 GGACGATTGACGTTGGGTGGACAAGTACTTGGGTAAGGATTGTAAACGAATGGCTCGCGG 1671 |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1402 GGACCATTGACGTTGGGTGGACAAGTACTTGGGTAAGGATAGTGAACGAATGGCTCGCGG 1461 Query 1672 TTGGCGTTTACATTTGGATGTTGGTGGCTCCAATGGTACTGAAAAGTAGACAAACAACAT 1731 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1462 TTGGCGTTTATATTTGGATGTTGGTGGCTCCAATGGTACTGAAAAGTAGACAAACAACAT 1521 Query 1732 GAGAGATCACCACAGAGAGATTTTTGTCACCTCTCAATTCATCTCCGCATTGTGGATCTT 1791 |||||||||| |||||||||||||| ||| |||| | || | | | | | ||||| Sbjct 1522 GAGAGATCACTACAGAGAGATTTTT-TCA--TCTCGGT--AT-T--G--T-G-G-ATCTT 1568 Query 1792 GTCGAAAAATAGAATAGAAGATTTAAGATTG-AGGAACTGTGTGAAATCAAT-ATATATT 1849 ||||||||||||||||||||||| ||||||| | ||||||||||||||| | ||||||| Sbjct 1569 GTCGAAAAATAGAATAGAAGATT-AAGATTGGAT-AACTGTGTGAAATCA-TCATATATT 1625 Query 1850 TGTACTTAGATTGTTTAGGATCAAAGAAAGATGGATACAAATATAGCTATACACTAGTAA 1909 |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1626 TGTACTTAGATTCTTTAGGATCAAAGAAAGATGGATACAAATATAGCTATAGATTAGTAA 1685 Query 1910 TACTGTCCCTAA-AGAGTTCTCTAATCATGAAGCGTGTACACATTATAACACATACATCT 1968 ||||| |||||| || || ||||| ||||||||||||||||| |||| |||||||||||| Sbjct 1686 TACTGACCCTAATAGGGT-CTCTATTCATGAAGCGTGTACACGTTATTACACATACATCT 1744 Query 1969 CTCTA 1973 ||||| Sbjct 1745 CTCTA 1749 Score = 359 bits (194), Expect = 5e-98 Identities = 243/265 (92%), Gaps = 9/265 (3%) Strand=Plus/Plus Query 7 AAGAAAGAAAGTGTTTTAAAAGAGAGC-AAACTCAGAAGAAACAACAAAACCTGAAATCA 65 ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1 AAGAAAGAAAGTG-TTTAAAA-AGAGCAAAACTCAGAAGAAACAACAAAACCTGAAATCA 58 Query 66 TTCATTTTCTTCTTCTTCACAATTTTCTCTCTGATCGTTTTT-GGGTTTCTCATTTATAA 124 || ||||||||||| |||||||||| ||||| |||| ||||| ||||||||||||| ||| Sbjct 59 TTAATTTTCTTCTTTTTCACAATTTCCTCTCAGATCTTTTTTGGGGTTTCTCATTTGTAA 118 Query 125 GTAAAACCTCTAATAAGAAACATTTTTCACATCACCAGATCCGATCTTGAGCTTTTGCAC 184 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 119 GTAAAACCTCTAATAAGAAACATTTTTCACATCTCCAGATCTGATCTTGAGCTTTTGCAC 178 Query 185 CAGCaaaaaaaaaaCAGGTTCTTTGTTCTACTGAAGGAAGACAACTAAACGCTACTGGAG 244 |||||||||||||||| |||||||||||| |||||||||||| |||| ||| |||||| Sbjct 179 CAGCAAAAAAAAAACAAGTTCTTTGTTCT---GAAGGAAGACAAGTAAAGGCTTCTGGAG 235 Query 245 TGTCTTTCTTGTGTTTAGTCCGGTC 269 | ||||||||||||||||| |||| Sbjct 236 T--CTTTCTTGTGTTTAGTCTGGTC 258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74999692405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5