BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13530.1 Length=1089 Score E Sequences producing significant alignments: (Bits) Value Ahg493559 jgi|Araly1|493559|fgenesh2_kg.7__2992__AT4G13530.2 1408 0.0 > Ahg493559 jgi|Araly1|493559|fgenesh2_kg.7__2992__AT4G13530.2 Length=982 Score = 1408 bits (762), Expect = 0.0 Identities = 933/1009 (92%), Gaps = 38/1009 (4%) Strand=Plus/Plus Query 70 AAAAAACCCCTAACTTTGACATGGAAGGAGAGATTCAAGACTGGGAAATACTTCAGAGCT 129 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAAAAACCTAACTTTGACATGGAAGGAGAGATTCAAGACTGGGAAATACTTCAGAGCT 60 Query 130 CGAGATCTACCACGGAAGATGACAATTCGAGGAGCTTGGAGGAGATTGATGATGGCACGC 189 |||||||||| ||||| ||||| |||||||||| ||||||||||||||| |||| ||||| Sbjct 61 CGAGATCTACAACGGAGGATGATAATTCGAGGAACTTGGAGGAGATTGAAGATGACACGC 120 Query 190 AAGGTATGATTAGGTTTGATCATTTCTCTCTTGAGAACCAGAGTGGTTTGTCTCGTTTGG 249 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 121 AAGGTATGATTAGGTTTGATCACTTCTCTCTTGAGAACCAGAGTGGTTTGTCTCGTGTGG 180 Query 250 AGGCAAACGATGAAGATGGGTCTGTTCAATCGGGTAGTCCAGGATGGATCGAACCTAGCT 309 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 AGGAAAACGATGAAGATGGGTCTGTTCAATCGGGTAGTCCAGGCTGGATCGAACCTAGCT 240 Query 310 CCGATGTTCCTTATGGTCCGAAGCATTTTAGTGAGTTATGGTCTGATTCAAGCAGTGATC 369 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 241 CCGATGCTCCTTATGGTCCTAAGCATTTTAGTGAGTTATGGTCTGATTCAAGCAGTGATC 300 Query 370 GGCTTGATGATCAGAGGTTAGTGGATGATGATGTGAATAACGAGATGGGTATAGAGAGAA 429 ||||||| || |||||||||||||||||||| || | || || | Sbjct 301 GGCTTGAGGAACAGAGGTTAGTGGATGATGA--TG--T-----GA-----AT-------A 339 Query 430 ACGAAGTGGGTATTGTTGAATATAGTGAAAGTATAGCTCAAGACATGGATTTGATAAGCT 489 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 340 ACGAAGTGGGTATTGTTGAATATAGTGAAAGTATAGCACAAGACATGGATTTGATGAGCT 399 Query 490 CTGATGAGAGAAAGGAAGAATCTTTACTTCATCCAGTGGAAGGAGAAGGAAACTCTGTTT 549 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 400 CTGATGAGAGAAAGGAAGAATCTTTACTTCATCCAGTGGAAGGAGAAGGAGACTCTGTTT 459 Query 550 CTATTGATCCTGGTGTTAAATC------TGGTGGTGGAGGAGGAGAAGAGAAAGGG-TTT 602 | |||||||| |||||||||| |||||||||||||||||||||| ||||| ||| Sbjct 460 CGGTTGATCCTTGTGTTAAATCTGGTGGTGGTGGTGGAGGAGGAGAAGAG-AAGGGTTTT 518 Query 603 GTGTGGTGGAAAATTCCAATAGAGGTGTTGAAGTATTGTGTGTTGAAAATTAATCCTATT 662 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 CTGTGGTGGAAAATTCCAATAGAGGTGTTGAAGTATTGTGTGTTGAAAATTAATCCTATT 578 Query 663 TGGTCTTTGTCCATGGCTGCAGCATTTGTGGGTTTTGTTATGTTAGGGCGTAGATTGTAC 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 TGGTCTTTGTCCATGGCTGCAGCATTTGTGGGTTTTGTTATGTTAGGGCGTAGATTGTAC 638 Query 723 AATATGAAGAAGAAGACTCGTTCCTTGCAGCTTAAGGTTCTTTTGGATGATAAGAAGGTG 782 |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | || Sbjct 639 AATATGAAGAAGAAGAGTCGTACCTTGCAGCTTAAGGTTCTTTTGGATGATAAG--G-TG 695 Query 783 GCGAATCATGCTGCTCGGTGGAACGAAGCAATCTCGGTAGTGAAACGTGTGCCCATAATC 842 || |||||| ||||||||||||||||||| ||||| |||||||||||||| ||| ||||| Sbjct 696 GCTAATCATTCTGCTCGGTGGAACGAAGCTATCTCAGTAGTGAAACGTGTACCCCTAATC 755 Query 843 CGGCCAGCACTTCCGTCATCAGTGGGTATGA--A-CCAGTGGTCCATGATGAGTTTAAGG 899 |||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| Sbjct 756 CGGCCAGCACTTCCATCATCAGTGGGTATGATGAACCAGTGGTCCATGATGAGTTTAAGG 815 Query 900 TGAAA-ATTAAGTGAATTTGAGGGCATAATAATGCATATATGTGAGATTATATGATTTGA 958 ||||| || ||||||||||||||||||||||||||||||||||||||| | |||||| || Sbjct 816 TGAAAGAT-AAGTGAATTTGAGGGCATAATAATGCATATATGTGAGATGAAATGATT-GA 873 Query 959 TGTGGTTGGTGCATGTATCATATGATTGTATTAAAAATGTTACAAAAACATACAAAAAGA 1018 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 874 TATGGTTGGTGCATGTATCATATGATTGTATAAAAAATGTTACAAAAACATACAAAAATA 933 Query 1019 TGCTTGTAAGTTTGTACTGTGTGTGTATATATTGTTACTTGCTTGGTGG 1067 ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 934 TGCGTGTAAGTTTGTACTGTGTGTGTATATATTGTTACTTGCTTGGTGG 982 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40562783688 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5