BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13570.2 Length=759 Score E Sequences producing significant alignments: (Bits) Value Ahg947103 jgi|Araly1|947103|scaffold_703332.1 361 5e-99 Ahg891031 jgi|Araly1|891031|Al_scaffold_0007_3017 333 1e-90 Ahg891045 jgi|Araly1|891045|Al_scaffold_0007_3031 327 5e-89 Ahg891034 jgi|Araly1|891034|Al_scaffold_0007_3020 326 2e-88 Ahg947092 jgi|Araly1|947092|scaffold_703321.1 322 2e-87 Ahg891036 jgi|Araly1|891036|Al_scaffold_0007_3022 311 5e-84 Ahg891032 jgi|Araly1|891032|Al_scaffold_0007_3018 174 7e-43 Ahg891052 jgi|Araly1|891052|Al_scaffold_0007_3038 145 6e-34 > Ahg947103 jgi|Araly1|947103|scaffold_703332.1 Length=568 Score = 361 bits (195), Expect = 5e-99 Identities = 256/286 (90%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 173 GATTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTG 232 |||||| ||||| ||||||||||| |||||| |||| || ||||||||||||| |||| | Sbjct 280 GATTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAG 339 Query 233 TTGGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTC 292 ||||||| |||| || |||||||| | |||||||||||||||||||||||||| |||||| Sbjct 340 TTGGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTC 399 Query 293 TTCAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATT 352 || ||||||| | |||| | ||||||||| ||||||||||||||||||||||| |||||| Sbjct 400 TTGAGTTGGCTGGAAACGCGAGCAAAGATCTAAAAGTGAAGAGGATAACTCCATGGCATT 459 Query 353 TGCAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTG 412 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || Sbjct 460 TGCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGAAACAATTGCTG 519 Query 413 GAGGAAGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 456 ||||| ||||||||||||||| ||||||||||| |||| |||||| Sbjct 520 GAGGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC 565 > Ahg891031 jgi|Araly1|891031|Al_scaffold_0007_3017 Length=267 Score = 333 bits (180), Expect = 1e-90 Identities = 238/267 (89%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 175 TTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTGTT 234 |||| | ||| ||||||||||| |||||| |||| || ||||||| ||||| |||| ||| Sbjct 1 TTTCCACTGGGTCGTATTCACAGGCAACTCAAGACCAAAGTTTCTCCACATGGTAGAGTT 60 Query 235 GGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTCTT 294 ||||| |||| || |||||||| | |||||||||||||||||||||||||| |||||||| Sbjct 61 GGTGCCACTGCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 120 Query 295 CAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTG 354 | ||||| | |||| | ||||||||| | ||||||||||||||||||||||| |||||| Sbjct 121 GACTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCAAGACATTTG 180 Query 355 CAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGGA 414 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 181 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGGA 240 Query 415 GGAAGTGTGATCCCTCACATCCACTAG 441 ||| ||||||||||||||||||||||| Sbjct 241 GGAGGTGTGATCCCTCACATCCACTAG 267 > Ahg891045 jgi|Araly1|891045|Al_scaffold_0007_3031 Length=267 Score = 327 bits (177), Expect = 5e-89 Identities = 238/268 (89%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 175 TTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTGTT 234 |||| ||||| ||||||||||| |||| | |||| || ||||||||||||| |||| ||| Sbjct 1 TTTCCAGTGGGTCGTATTCACAGGCAAGTCAAGACCATAGTTTCTGCACATGGTAGAGTT 60 Query 235 GGTGCGACTGA-TGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTCT 293 ||||| ||| | || |||||||| | |||||||||||||||||||||||||| ||||||| Sbjct 61 GGTGCCACT-ACTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCT 119 Query 294 TCAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTT 353 | ||||||| | |||| | ||||||||| | ||| ||||||||||||||||||||||||| Sbjct 120 TGAGTTGGCTGGAAACGCGAGCAAAGATCTGAAACTGAAGAGGATAACTCCAAGGCATTT 179 Query 354 GCAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGG 413 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 180 GCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTGG 239 Query 414 AGGAAGTGTGATCCCTCACATCCACTAG 441 |||| ||||||||||||||| ||| ||| Sbjct 240 AGGAGGTGTGATCCCTCACACCCAGTAG 267 > Ahg891034 jgi|Araly1|891034|Al_scaffold_0007_3020 Length=297 Score = 326 bits (176), Expect = 2e-88 Identities = 236/266 (89%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 175 TTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTGTT 234 |||| ||||| ||||||||| | |||||| |||| ||||||||||||| || |||| ||| Sbjct 31 TTTCCAGTGGTTCGTATTCATAGGCAACTCAAGACCAGAGTTTCTGCATATGGTAGAGTT 90 Query 235 GGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTCTT 294 ||||| ||| || |||||||| | |||||||||||||||||||||||||| |||||||| Sbjct 91 GGTGCCACTTCTGATGTCTACACGGCTTCAATCCTTGAATACCTAACTACAAAGGTTCTT 150 Query 295 CAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTG 354 ||||||| | ||| | ||||||||| | ||||||||||||||||||||||||||||| Sbjct 151 GAGTTGGCTGGCAACGCGAGCAAAGATCTGGAAGTGAAGAGGATAACTCCAAGGCATTTG 210 Query 355 CAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGGA 414 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 211 CAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTCCTGGA 270 Query 415 GGAAGTGTGATCCCTCACATCCACTA 440 | | |||||||||||||||||||||| Sbjct 271 GTAGGTGTGATCCCTCACATCCACTA 296 > Ahg947092 jgi|Araly1|947092|scaffold_703321.1 Length=553 Score = 322 bits (174), Expect = 2e-87 Identities = 250/286 (87%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 173 GATTTCAAGTGGCTCGTATTCACAAGCAACTTAAGAACAGAGTTTCTGCACATAGTAGTG 232 |||||| ||||| ||||||||||| |||||| |||| || ||||||||||||| |||| | Sbjct 271 GATTTCCAGTGGGTCGTATTCACAGGCAACTCAAGACCATAGTTTCTGCACATGGTAGAG 330 Query 233 TTGGTGCGACTGATGTTGTCTACATGACTTCAATCCTTGAATACCTAACTACAGAGGTTC 292 ||||||| | || || |||||||| | |||||||||||||||| | ||| | |||||| Sbjct 331 TTGGTGCCAATGCTGATGTCTACACGGCTTCAATCCTTGAATA-C---CTA-A-AGGTTC 384 Query 293 TTCAGTTGGCCGAAAACACTAGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATT 352 || ||||||| | |||| | ||||||||| | ||||||||||||||||||||| |||||| Sbjct 385 TTGAGTTGGCTGGAAACGCGAGCAAAGATCTGAAAGTGAAGAGGATAACTCCATGGCATT 444 Query 353 TGCAGTTGGCGATCAGAGGAGATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTG 412 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 445 TGCAGTTGGCGATCAGAGGAGATGAGGAGCTTGACACACTCATCAAAGGAACAATTGCTG 504 Query 413 GAGGAAGTGTGATCCCTCACATCCACTAGTCTC--ATCAACAAAAC 456 ||||| ||||||||||||||| ||||||||||| |||| |||||| Sbjct 505 GAGGAGGTGTGATCCCTCACACCCACTAGTCTCTCATCAGCAAAAC 550 Score = 195 bits (105), Expect = 6e-49 Identities = 139/155 (90%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 313 AGCAAAGATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGA 372 ||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 120 AGCAAAGATCTGAAAGTGAAGAGGATTACTCCAAGGCATTTGCAGTTGGCGATCAGAGGA 179 Query 373 GATGAAGAGCTTGACACACTCATCAAAGGAACAATTATTGGAGGAAGTGTGA-TCCCTCA 431 ||||| ||||||| ||||||||||||||||||||| ||||||| |||| | | ||||| Sbjct 180 GATGAGGAGCTTGTGACACTCATCAAAGGAACAATTGCTGGAGGAGGTGT-ACTGCCTCA 238 Query 432 CATCCAC-TAGTCTCATCAACAAAACAACCAAGGA 465 ||||||| | |||||||||||||| | |||||||| Sbjct 239 CATCCACAT-GTCTCATCAACAAACCCACCAAGGA 272 > Ahg891036 jgi|Araly1|891036|Al_scaffold_0007_3022 Length=402 Score = 311 bits (168), Expect = 5e-84 Identities = 216/240 (90%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 201 ACTTAAGAACAGAGTTTCTGCACATAGTAGTGTTGGTGCGACTGATGTTGTCTACATGAC 260 ||| |||| |||||||||||||||| |||| ||| |||| |||| || |||||||| | | Sbjct 162 ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTCGTGCCACTGCTGATGTCTACACGGC 221 Query 261 TTCAATCCTTGAATACCTAACTACAGAGGTTCTTCAGTTGGCCGAAAACACTAGCAAAGA 320 |||||||||||||||| |||||||| |||||||| ||||||| | |||||| |||||||| Sbjct 222 TTCAATCCTTGAATACATAACTACAAAGGTTCTTGAGTTGGCTGGAAACACGAGCAAAGA 281 Query 321 TTTAAAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGAGATGAAGA 380 | | |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 282 TCTGGAAGTGAAGAGGATAACTCCAAGGCATTTGCAGTTGGCGATCAGAGGAGATGAGGA 341 Query 381 GCTTGACACACTCATCAAAGGAACAATTATTGGAGGAAGTGTGATCCCTCACATCCACTA 440 |||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| Sbjct 342 GCTTGACACACTCATCAAAGGAACAATTGCTGGAGTAGGTGTGATCCCTCACATCCACTA 401 > Ahg891032 jgi|Araly1|891032|Al_scaffold_0007_3018 Length=333 Score = 174 bits (94), Expect = 7e-43 Identities = 135/155 (87%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 201 ACTTAAGAACAGAGTTTCTGCACATAGTAGTGTTGGTGCGACTGATGTTGTCTACATGAC 260 ||| |||| |||||||||||||||| |||| |||| ||| |||| || |||||||| | | Sbjct 177 ACTCAAGACCAGAGTTTCTGCACATGGTAGAGTTGATGCCACTGCTGATGTCTACACGGC 236 Query 261 TTCAATCCTTGAATACCTAACTACAGAGGTTCTTCAGTTGGC-CGAAAACACTAGCAAAG 319 ||||||||||||||||||||||||| |||||||| ||||||| ||| | | ||||||| Sbjct 237 TTCAATCCTTGAATACCTAACTACAAAGGTTCTTGAGTTGGCTGGAAGA-GCGAGCAAAG 295 Query 320 ATTTAAAAGTGAAGAGGATAACTCCAAGGCATTTG 354 || | |||||||||||||||||||||||||||||| Sbjct 296 ATCTGAAAGTGAAGAGGATAACTCCAAGGCATTTG 330 > Ahg891052 jgi|Araly1|891052|Al_scaffold_0007_3038 Length=276 Score = 145 bits (78), Expect = 6e-34 Identities = 101/112 (90%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 580 ACATCATAATTTTACGTCTCATCTCGTAAACGATAGGAGAAGTTCTTTGCTCCTAGAGTT 639 |||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| | Sbjct 244 ACATCATAATTTTACGTCTCATCTCGTAGATGATAGGAGAAGTCCTTTGCTCCTAGAGGT 185 Query 640 TTG-GTGCTAAACAATTCACAGTGATATGCATTCCATGTGGCTCCTTAAAAC 690 | |||||| |||||||||| ||| ||||| |||||||||||||||||||| Sbjct 184 G-GAGTGCTATACAATTCACAATGACATGCAATCCATGTGGCTCCTTAAAAC 134 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27982221078 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5