BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13670.1 Length=1353 Score E Sequences producing significant alignments: (Bits) Value Ahg891001 jgi|Araly1|891001|Al_scaffold_0007_2987 1808 0.0 Ahg947053 jgi|Araly1|947053|scaffold_703282.1 316 2e-85 > Ahg891001 jgi|Araly1|891001|Al_scaffold_0007_2987 Length=1185 Score = 1808 bits (979), Expect = 0.0 Identities = 1120/1185 (95%), Gaps = 21/1185 (2%) Strand=Plus/Plus Query 66 atggcttcttcttctctacctctttctcttccgtttccactccgatctcttACTAGTACC 125 ||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| || Sbjct 1 ATGGCTTCTTCTTCTCTACCTCTGTCTCTTCCGTTTCCACTCCGATCTCGTAGTAGTCCC 60 Query 126 ACTCGATCTCTACCATTTCAATGTTCTCCTCTCTTTTTCTCTATTCCTTCTTCAATCGTT 185 |||||||||||||| |||| ||| |||||||||||||||||| ||||||||||||||||| Sbjct 61 ACTCGATCTCTACCTTTTCGATGCTCTCCTCTCTTTTTCTCTCTTCCTTCTTCAATCGTT 120 Query 186 TGCTTCTCCACTCAAAA----TCC-----CGACCGCGAAGAGGTCCGGTGGCTCCGGGAA 236 ||||||||||||||||| ||| |||||||||||| |||||||||||||||||| Sbjct 121 TGCTTCTCCACTCAAAACCCCTCCGGTTACGACCGCGAAGAAGTCCGGTGGCTCCGGGAA 180 Query 237 GAGCAGAGATGGATTCGCGAGGAGCAACGATGGATTCGTGAAGAACAGAGATGGATACGC 296 ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 181 GAGCAAAGATGGATCCGCGAGGAGCAACGATGGCTTCGTGAAGAACAGAGATGGATACGT 240 Query 297 GAACGTGAATCGCTTCTACAAGAGATTTCGGATCTACAGCTCAGAATTCAATCCCTAGAG 356 || |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 241 GAGCGTGAATCACTTCTACAAGAGATTTCGGATCTCCAGCTCAAAATTCAATCCCTAGAG 300 Query 357 TCACGAAATTCGCAATTGGGGAATTCTATTCCCGATACGATTTCGAATATCGCTGCTTTG 416 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||| Sbjct 301 TCACGAAATTCGCAATTGGGGACTTCTGTTCCCGATACGATTTCGAATATCGCTGCGTTG 360 Query 417 CTTCAGGTTTTGAAGGAGAAGAATCGGATTTCTGAGAGTGGATTGAGCGCAACGCCGATG 476 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 361 CTTCAGGTTTTGAAGGAGAAGAATCGGATTTCGGAGAGTGGATTGAGCGCAACGCCGATG 420 Query 477 GTATTGGAGAGTACGAGAGAACAAATTGTTGAGGAGGT---GGAA---GAAGAAG-A--G 527 |||||||||||||||||||||||||||||||||||||| |||| ||||||| | | Sbjct 421 GTATTGGAGAGTACGAGAGAACAAATTGTTGAGGAGGTAGAGGAAGTGGAAGAAGAAGTG 480 Query 528 AAGCGAGTGATTATTGCTGAAGAGAAAGTTAGGGTTTCGGAGCCGGTGAAGAAGATCAAG 587 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 481 AAGCGAGTGATTATTGCTGAAGAGAAAGTTAGGGTTTCGGAGCCGGTGAAGAAGAAGAAG 540 Query 588 A-G-GA-GGATATTGAAAGTTGGAAGCGAAGGCGACGATGTTCAAGCTTTGCAGGAAGCT 644 | | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ACGAGACGGACATTGAAAGTTGGAAGCGAAGGCGACGATGTTCAAGCTTTGCAGGAAGCT 600 Query 645 CTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCTCGAGCTTTTCAAGT 704 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCTCGAGCTTTTCAAGT 660 Query 705 GGGACTGCAAGTGCTGTTAAGACTTGGCAAGCATCGCTTGGGGTCCGTGAGGATGGGGTA 764 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 661 GGGACTGCAAGTGCTGTTAAGACTTGGCAAGCATCGCTTGGCGTCCGTGAGGATGGGATA 720 Query 765 ATGACAGCAGAGCTTCTTCAGAGGTTGTTCATGGATGAAGACGTAGAGACAGATAAGGAT 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 ATGACAGCAGAGCTTCTTCAGAGGTTGTTCATGGATGAAGACGTAGAGACAGATAAGGAT 780 Query 825 GAAGCAAGTACAATGAAGAAAGAGGAAGCTGGTAATGGGGCGGTATTTACTTCAGTGACA 884 |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 781 GAAGCAAGTACAATGAAGAAAGAGGAAGCTGGTAATGGATCGGTATTTAGTTCAGTGACA 840 Query 885 CAAGTCCCTGAGAAGAAGCAATCAATCGTGAAAGATCAAAGTGACAGAGAAGTTGACGTT 944 ||||||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||| Sbjct 841 CAAGTCCCTGAGAAGAAGCAATCAATCATAAAAGATCAAAGTAACAGAGAAGATGACGTT 900 Query 945 ACTCAAAATCGGGTTTTTCTTCTTGGAGAAAACAGATGGGAAGATCCCTCCAGGCTCATT 1004 ||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 901 ACTCAAAATCGCGTTTATCTTCTTGGAGAAAACAGATGGGAAGATCCTTCCAGGCTCATT 960 Query 1005 GGCAGGAACAAACCGGTAGACAGAAGTGAATCAACAAACACCAAAACGAGGTGCATCACT 1064 ||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||| Sbjct 961 GGCAGGAACAAACCGGTAGACAGTAGTAAATCCACAATCACCAAAACGAGGTGCATCACT 1020 Query 1065 TGTCGAGGGGAGGGTCGATTGATGTGCCTAGAGTGCGATGGAACCGGTGAGCCAAACATT 1124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TGTCGAGGGGAGGGTCGATTGATGTGCCTAGAGTGCGATGGAACCGGTGAGCCAAACATT 1080 Query 1125 GAGCCGCAGTTCATGGAGTGGGTTGGTGAAGATACGAAGTGTCCGTACTGTGAAGGTCTT 1184 ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1081 GAGCCGCAGTTTATGGAATGGGTTGGTGAAGATACAAAGTGTCCGTACTGTGAAGGTCTT 1140 Query 1185 GGCTATACAGTTTGCGATGTCTGCGACGGCaaaaaaaaCTTATAA 1229 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 GGCTATACAGTTTGCGATGTCTGCGACGGCAAAAAAAACTTATAA 1185 > Ahg947053 jgi|Araly1|947053|scaffold_703282.1 Length=397 Score = 316 bits (171), Expect = 2e-85 Identities = 278/325 (86%), Gaps = 26/325 (8%) Strand=Plus/Plus Query 732 CAA-GCATCGCTTGGGGTCCGTGAGGATGGGGTAATGACAGCAGAGCTTCTTCAGAGGTT 790 ||| ||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||| Sbjct 74 CAATGCATCGCTTGGCGTCCGTGAGGATGGGATAATGACAGCAGAGCTTCTCCGGAGGTT 133 Query 791 GTTCATGGATGAAGACGT--AG--A--GA----CAGA---------TAAGGATG---AAG 828 |||||||||||||||||| || | || |||| | ||| || | | Sbjct 134 GTTCATGGATGAAGACGTAGAGACATGGAGGGGCAGAGCGGTTCTGTTAGGTTGTTTACG 193 Query 829 CAAGTA-C-AATGAAGAAAGAGGAAGCTGGTAATGGGGCGGTATTTACTTCAGTGACACA 886 | | | | ||| ||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 194 GATGAAGCGAATAAAGAAAGAGGAAGCTGGTAATGGATCGGTATTTAGTTCAGTGACACC 253 Query 887 AGTCCCTGAGAAGAAGCAATCAATCGTGAAAGATCAAAGTGACAGAGAAGTTGACGTTAC 946 ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| Sbjct 254 AGTCCCTGAGAAGAAGCAATCAATCATAAAAGATCAAAGTGACAGAGAAGTCGACGTTAC 313 Query 947 TCAAAATCGGGTTTTTCTTCTTGGAGAAAACAGATGGGAAGATCCCTCCAGGCTCATTGG 1006 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314 TCAAAATAGTGTTTTTCTTCTTGGAGAAAACAGATGGGAAGATCCCTCCAGGCTCATTGG 373 Query 1007 CAGGAACAAACCGGTAGACAGAAGT 1031 | |||||||||||||||||||||| Sbjct 374 -ATGAACAAACCGGTAGACAGAAGT 397 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50627233776 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5