BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13800.1
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493534 jgi|Araly1|493534|fgenesh2_kg.7__2967__AT4G13800.1 2093 0.0
Ahg930442 jgi|Araly1|930442|scaffold_302899.1 952 0.0
> Ahg493534 jgi|Araly1|493534|fgenesh2_kg.7__2967__AT4G13800.1
Length=1498
Score = 2093 bits (1133), Expect = 0.0
Identities = 1391/1508 (92%), Gaps = 47/1508 (3%)
Strand=Plus/Plus
Query 50 TTTTCAGAACATGATTGGTGAGGCAATTGCTAAAATTAAATAGTACTTATGTGTTTTATG 109
||||| |||||| | | |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 34 TTTTCGGAACATAACTAGTGAGGCAATTGCTAAAATTAATTAGTAATTATGTGTTTTATG 93
Query 110 TTGATTTTTTGATTAGAAAATGGACATTT-TGTCCGATTCTTATTTGTTTGTGttttttt 168
|||| |||||||| ||| |||| |||| | || |||||||||||||||||| | |||
Sbjct 94 TTGA--GTTTGATTATAAAGTGGATATTTAT-TCTGATTCTTATTTGTTTGTG--TGTTT 148
Query 169 tttttGTAGACGCAATAAGCTATCTTCAGCCTAAACTTTCTGGAAATTTTCGTCATTAGT 228
|||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 149 TTTTTGTAGACGCAAT-AGCTATCTTCAGCCTAAACTTTCTGGAATTTTTCATCATTAGC 207
Query 229 AACCTG--AAATTATCTTAACTTGTATATAAGCAAGACTATAAATATTAGCAAAGATGGA 286
|||||| |||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 208 AACCTGAAAAATTATCTTAATTTGTACATAAGCAAAACTATAAATATTAGCAAAGATGGA 267
Query 287 GGAGATGTCACCTGATAATATACATGGAGTCATTTTAGCTGTGTCTTCGAGTATATTCAT 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GGAGATGTCACCTGATAATATACATGGAGTCATTTTAGCTGTGTCTTCGAGTATATTCAT 327
Query 347 CGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTTAAGAAGGCCGGTGTTAGCGGCGCCAG 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTTAAGAAGGCCGGTGTTAGCGGCGCCAG 387
Query 407 AGCAGGTGAAGGAGGATATGGATACTTATATGAACCTTGGTGGTGGGCTGGAATGATAAC 466
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 388 AGCAGGTGAAGGAGGGTATGGATACTTGTATGAACCTTGGTGGTGGGCTGGGATGATAAC 447
Query 467 AATGATTGTTGGGGAGATAGCCAATTTTGCAGCATATGCATTTGCACCGGCTATTCTAGT 526
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 448 TATGATTGTTGGGGAGATAGCCAATTTTGCAGCTTATGCATTTGCACCGGCTATTCTAGT 507
Query 527 AACACCTTTGGGAGCTTTAAGTATTATTTTCAGCGCAGTGCTAGCACATTTTATTTTGGA 586
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GACACCTTTGGGAGCTCTAAGTATTATTTTCAGCGCAGTGCTAGCACATTTTATTTTGGA 567
Query 587 AGAGAAGTTGCATATGTTT-GGTATACTTGGTTGTGTCCTCTGTGTTGTTGGATCTACAA 645
||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 568 AGAGAAGTTGCATAT-TTTCGGTATACTTGGCTGTGTCCTCTGCGTTGTTGGATCTACAA 626
Query 646 CGATTGTTTTACATGCTCCTCACGAGCAAGGCATTGAATCCGTCAAGCAAGTATGGCACC 705
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 627 CGATTGTTTTACATGCTCCTCACGAGCAAGACATTGAATCAGTCAAGCAAGTATGGCACC 686
Query 706 TTGCTACCGAACCAGGTTTCCTTGCATATTCTGCTGTGGTCTTGGTTGTGGTGCTTGCAT 765
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 687 TTGCTACCGAACCAGGTTTCCTTGCGTATTCTGCTGTGGTTTTGGTTGTGGTGCTTGCAT 746
Query 766 TGATCTTTTACTATGAGCCGCGTTATGGGAAGACGCATATGATAGTATATGTTGGGATTT 825
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TGATCTTCTATTACGAGCCGCGTTATGGGAAGACGCATATGATAGTATATGTTGGGATTT 806
Query 826 GCTCTCTAATGGGCTCTCTTACAGTTATGAGTGTTAAAGCTGTGGCGATCGCCATAAAGC 885
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GCTCTTTAATGGGCTCTCTTACAGTTATGAGTGTTAAAGCTGTGGCGATCGCCATAAAGC 866
Query 886 TGACTTTTTCCGGGATGAACCAATTCAAGTACTTCCACGCATGGATCTTCATCATAGTAG 945
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 867 TGACTTTTTCCGGGATGAATCAGTTCAAGTACTTCCACGCATGGATCTTTATCATAGTAG 926
Query 946 TGACCATATGTTGCATTTTGCAAATCAACTACTTGAACAAGGCTCTGGATAATTTCAACA 1005
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TGACCATATGTTGCATTTTACAAATCAACTACTTGAACAAGGCTCTGGATAATTTCAACA 986
Query 1006 CAGCAGTCATATCTCCAGTGTACTATGTTATGTTTACAACATTCACCATCTTAGCTAGTA 1065
|||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 987 CAGCGGTCATATCTCCAGTTTACTACGTTATGTTTACAACATTCACCATCTTAGCTAGCA 1046
Query 1066 TGATCATGTTCAAGGATTGGGCTTCTCAAAGTGGATTGCAAATTGCTACCGAGCTATGTG 1125
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1047 TGATCATGTTCAAGGACTGGGCTTCTCAAAGCGGATTGCAAATTGCGACCGAGCTATGTG 1106
Query 1126 GCTTTGTGACCATTTTGTCAGGAACTTTTCTTCTCCACAAGACAAAAGACATGGGAAACA 1185
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 1107 GCTTTGTGACCATTTTGTCAGGAACCTTTCTTCTCCATAAGACAAAGGACATGGGAAACA 1166
Query 1186 GTACCAGCTTACGCGGCTCCACATCACACTCGCCTAGAGACACTCCTGTCTTCATAAACT 1245
|| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1167 GTGCCAGCTTACGCGGCTCCACATCGCACTCGCCTAGAGATACTCCTGTCTTCATAAACT 1226
Query 1246 CAGGTTCCAGTCGCAGCTCCAATTCCACTAGACCTGCAATACTATAATCCCACGGCTCCG 1305
|||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||
Sbjct 1227 CAGGTTCCAGTCGCAGTTCCAATTCCACTAGGCCTGCAATTTTATAATCCCATGGCTCCG 1286
Query 1306 ATAGTAGATCATCTAACGGTCAAGATCGAGGCAACACGAGCTCAAAAGCCTCAAAGAGAA 1365
| |||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |||
Sbjct 1287 ACGGTAGATCATCTAACGGTCTAGAACGAGGCAACACGAGCACAAAAGCCTCAAAGGGAA 1346
Query 1366 CtttttttGGGTGACAAATGAGaaaaaaaaCAGAGCAAATGGGGTTTAATTAAGGCTATA 1425
||||||| | ||| | ||||||| || |||||||| || ||||
Sbjct 1347 CTTTTTT------A-AAA--A---------CAGAGCATATTGGGTTTAAG---GG-TATA 1384
Query 1426 ATTGGTTTTTTGGATAACGGAAGGTTTAGTGAATGATTTGTTAGGGATACTATTTGATTG 1485
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 ATTTATTTTTTGGATAAGGGAAGGTTTAGTGAATGATTTGTTAGGGATACTATTTGATTG 1444
Query 1486 ATTGCTTCATGTTTATTTGTTTCTAATATTTTTTGTTTGTTTCTCATATGAGATATAAAG 1545
|||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 1445 ATTGCTTCATGTTT-TTT-TTT------------GTTTGTTTCTCATATGAGATATAAAG 1490
Query 1546 AAAGTTTT 1553
||||||||
Sbjct 1491 AAAGTTTT 1498
> Ahg930442 jgi|Araly1|930442|scaffold_302899.1
Length=1055
Score = 952 bits (515), Expect = 0.0
Identities = 798/932 (86%), Gaps = 29/932 (3%)
Strand=Plus/Plus
Query 270 ATAT-TAGCAAAGATGGAGGAGATGTCACCTGATAATATACATGGAGTCATTTTAGCTGT 328
|||| |||| |||||||| | |||||||||||||| ||| |||||||||||||||| ||
Sbjct 9 ATATATAGCTAAGATGGATCAAATGTCACCTGATAACATAAATGGAGTCATTTTAGCAGT 68
Query 329 GTCTTCGAGTATATTCATCGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTTAAGAAGGC 388
|||||| ||||| || || |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 69 GTCTTCAAGTATTTTTATTGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTCAAGAAAGC 128
Query 389 CGGTGTTAGCGGCG-CCAGAGCAGGTGAAGGAGGATATGGATACTTATATGAACCTTGGT 447
||||| ||||| | || |||||||||||||||| |||||||| ||| | ||||| ||||
Sbjct 129 CGGTGCAAGCGGTGTCC-GAGCAGGTGAAGGAGGGTATGGATATTTAAAGGAACCATGGT 187
Query 448 GGTGGGCTGGAATGATAACAATGATTGTTGGGGA-GATAGCCAATTTTGCAGCATATGCA 506
|||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||
Sbjct 188 GGTGGGCTGGAATGATAACAATGATTGTTGGGGAAG-TAGCTAATTTTGCAGCCTATGCA 246
Query 507 TTTGCACCGGCTATTCTAGTAACACCTTTGGGAGCTTTAAGTATTATTTTCAGCGCAGTG 566
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 247 TTTGCACCGGCTATTCTTGTAACACCTTTGGGAGCTTTAAGTATCATATTCAGCGCAGTG 306
Query 567 CTAGCACATTTTATTTTGGAAGAGAAGTTGCATATGTTTGGTATACTTGGTTGTGTCCTC 626
|| || |||||||||||| ||||||| ||||||||||||| ||||| ||||| | ||
Sbjct 307 CTCGCGCATTTTATTTTGCAAGAGAAACTGCATATGTTTGGGATACTCGGTTGCATTCTT 366
Query 627 TGTGTTGTTGGATCTACAACGATTGTTTTACATGCTCCTCACGAGCAAGGCA-TTGAATC 685
||||||||||| |||||||| || || ||||| || || || || || | | |||||||
Sbjct 367 TGTGTTGTTGGGTCTACAACTATAGTCTTACACGCCCCGCATGAACA-GAAAATTGAATC 425
Query 686 CGTCAAGCAAGTATGGCACCTTGCTACCGAACCAGGTTTCCTTGCATATTCTGCTGTGGT 745
||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||||| |
Sbjct 426 AGTCAAGCAAATATGGCAGCTTGCTATCGAACCAGGTTTCCTTGTGTATTCTGCTGTGAT 485
Query 746 CT-TGGTTGTGGTG-CT-TGCATTGATCTTTTACTATGAGCCGCGTTATGGGAAGACGCA 802
| ||||||||||| || | | | |||||| |||||||| |||||||| |||||||| ||
Sbjct 486 -TGTGGTTGTGGTGGCTATAC-T-GATCTTCTACTATGAACCGCGTTACGGGAAGACTCA 542
Query 803 TATGATAGTATATGTTGGGATTTGCTCTCT-AATGGGCTCTCTTACAGTTATGAGTGTTA 861
||||||||||||||| || || || || || |||||| |||||||| ||||||||||| |
Sbjct 543 TATGATAGTATATGTCGGAATCTGTTC-CTTAATGGGTTCTCTTACTGTTATGAGTGTCA 601
Query 862 AAGCTGTGGCGATCGCCAT-AAAGCTGACTTTTTCCGGGATGAACCAATTCAAGTACTTC 920
||||||||||||| || || ||| ||||| ||||| |||| ||| || ||||| ||||||
Sbjct 602 AAGCTGTGGCGATTGCGATTAAA-CTGACATTTTCGGGGACGAATCAGTTCAAATACTTC 660
Query 921 CACGCATGGATCTTCATCATAGTAGT-G-ACCATATGTTGCATTTTGCAAATCAACTACT 978
|| | ||||| ||||| ||||||| | | | | |||||| ||||||||||||||||||
Sbjct 661 AACACTTGGATTTTCATTTTAGTAGTTGCAAC-T-TGTTGCCTTTTGCAAATCAACTACT 718
Query 979 TGAACAAGGC-TCTGGATA-ATTTCAACACAGCAGTCATATCTCCAGTGTACTATGTTAT 1036
|||||||||| | |||||| ||| ||| ||||| || || ||||| || ||||| |||||
Sbjct 719 TGAACAAGGCGT-TGGATACATT-CAATACAGCTGTTATTTCTCCGGTTTACTACGTTAT 776
Query 1037 GTTTACAACATTCACCATCTTAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAAAG 1096
||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 777 GTTCACAACTTTCACAATCATAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAGAG 836
Query 1097 TGGATTGCAA-ATTGCTAC-CGAGCTATGTGGCTTTGTGACCATTTTGTCAGGAACTTTT 1154
||||||| || ||||| || | || | ||||| |||||||| |||||||||||||| |||
Sbjct 837 TGGATTG-AAGATTGCAACAC-AGTTGTGTGGGTTTGTGACGATTTTGTCAGGAACATTT 894
Query 1155 CTTCTCCACAAGACAAAAGACATGGGAAACAG 1186
|| || |||||||| ||||| |||||||||||
Sbjct 895 CTGCTTCACAAGACCAAAGATATGGGAAACAG 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58392345585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5