BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G13840.1
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493531 jgi|Araly1|493531|fgenesh2_kg.7__2964__AT4G13840.1 1908 0.0
> Ahg493531 jgi|Araly1|493531|fgenesh2_kg.7__2964__AT4G13840.1
Length=1545
Score = 1908 bits (1033), Expect = 0.0
Identities = 1302/1427 (91%), Gaps = 38/1427 (3%)
Strand=Plus/Plus
Query 27 agagagagagaTAAATGTCCAAGCAAAGGTTCATATAATTTTATGTTATTAAATTTGCtt 86
|||||||||||||||||||||| |||||| | || ||| | || | ||||| ||
Sbjct 1 AGAGAGAGAGATAAATGTCCAAACAAAGG--C----AACTTT-TCATA-T-AATTT--TT 49
Query 87 tttttttGTTAAAGTGTTACATACATCGATCGACTTGTT-AGTTC--A-A--A-G-A--A 136
||| |||||| |||||||||||||||||||||||||||| | ||| | | | | | |
Sbjct 50 TTTCTTTGTTGAAGTGTTACATACATCGATCGACTTGTTAACTTCAAAGATCACGTAGTA 109
Query 137 TCAGTTTAACTCCACTGAGCCATCATGGGTCGATCTCAAGAACAGGGACAGGGACAGGGT 196
||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||| |||
Sbjct 110 TCAGTCCAACTCCACTGAGTCATCATGGGTCGATCTCTAGAACGGGGACAGGGACAAGGT 169
Query 197 CCGGTTCACAGCATTCGGCTATCTACCGTAGGTGCGACCCGGCCGACAGAGACGGGTACG 256
||| |||||||||| ||| |||| ||||| ||||||| | ||||||||||||| ||||||
Sbjct 170 CCGCTTCACAGCATCCGGTTATCGACCGTGGGTGCGATCAGGCCGACAGAGACCGGTACG 229
Query 257 ACCCACGAACCAACCGGTTTAGACCTAGCCATGAAGCTCCACTACCTCAAGGCGGCATAC 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 230 ACCCACGAACCAACCGGTTTAGACCTAGCCATGAAGCTCCACTACCTCAAGGCGGCTTAC 289
Query 317 ATTTACTCAGCCGAGACAGCACGTGACTTAACCGTGAGACACCTGAAGGAGGCCATGTTC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ATTTACTCAGCCGAGACAGCACGTGACTTAACCGTGAGACACCTGAAGGAGGCCATGTTC 349
Query 377 ATGTTGTTCGACCAGATCGCTTGGACCACAGGCAGGTTCTCAAGGAGAGACTCGGGCCGT 436
||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||
Sbjct 350 ATGTTGTTCGACCAGATAGCTTGGACCACAGGCAGGTTCTCACGGAGAGACTCCGGCCGT 409
Query 437 CCGTACATCAAGTGCAACGACTGCGGCACACGTTTCGTGGAAGGTCAATGCAATCTCACT 496
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 410 CCGTACATCAAGTGCAACGACTGCGGCACGCGTTTTGTGGAAGGTCAATGCAATCTCACT 469
Query 497 GTGGAGGAGTGGCTCAGTAAACCGGACCGGTCAGTTGATGAGTTTCTGGTTTATCATCAT 556
|| || |||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 470 GTCGAAGAGTGGCTCAGTAAACCGGACCGGTCAGTTGATGAGTTTCTGATTTACCATCAA 529
Query 557 CCTATTGGACCGGAATTGACGTTCTCTCCTTTGATCTACGTTCAGATGACCCGGTTTAAA 616
|||||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 530 CCTATTGGACCGGAGTTGACGTTCTCACCTTTGATCTATGTTCAGATGATCCGGTTTAAA 589
Query 617 TGCGGAGGATTAGGGTTGGGCCTAAGCTGGGCCAATATAATAGGAGACGCATTCTCTCTG 676
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 590 TGCGGAGGATTAGGTTTGGGCCTAAGCTGGGCCAATATAATAGGAGACTCATTCTCTCTA 649
Query 677 TTCTATGCCTTCAACTTATGGGCTAAGGC-CATTACCGGAGAAAAGATTTATGCCCCAAC 735
||||||||||||||||||||||||||| | ||||||||| ||||||||| ||| ||||||
Sbjct 650 TTCTATGCCTTCAACTTATGGGCTAAG-CTCATTACCGGCGAAAAGATTCATGTCCCAAC 708
Query 736 AACACCCTCTATAGG-AGAGAGAAGGTTCCAAAGCCCAAACCCGACGGTTAAAGATCCGG 794
| | | |||| ||| ||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 709 A-CTC--TCTA-AGGGAGACAGAAGGTTCCAAAGTCCAAACCCGACGGTTAAAGACCCGG 764
Query 795 TTTCAATTAAACGGGTCGAACCCG-TTGGAGATCTCTGGGTCACTCCAAACGACAAGAAA 853
||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 765 TTTCAATCAAACGGGTCGA-CCCGGTTGGAGATCTCTGGGTCACTCCAAACGACAAGAAA 823
Query 854 TTGGCGAATTACTGTTTCAATCTC-TCAGTCGCCGATCAGATATCA-CCACATTTTCCGG 911
||||||||||||||||||| || || ||||||||||||||| || |||||||||||||
Sbjct 824 ATGGCGAATTACTGTTTCAAAATCGTC-GTCGCCGATCAGATA-CAACCACATTTTCCGG 881
Query 912 CGAAGGGAGATGACTC-GATTCCGGTGTTCGAGATTCTCGCCGGAATCATATGGAAATGC 970
||||||||| ||| || |||||||||||||||||||| | |||| ||||| |||||||||
Sbjct 882 CGAAGGGAGCTGA-TCCGATTCCGGTGTTCGAGATTCCCTCCGGGATCATTTGGAAATGC 940
Query 971 ATAGCTAAAGTTAGGGTAGAGCCAAAGCCTGTAACGGTTACGATCATTAAAAAAGATCCG 1030
|||||||| ||||||| ||||||||||||||| || ||||||||||| ||||| ||||||
Sbjct 941 ATAGCTAAGGTTAGGGAAGAGCCAAAGCCTGTGACCGTTACGATCATCAAAAAGGATCCG 1000
Query 1031 AACGATCTGAAACTTAATGCGATTCGAAACAGTCAGGTGATCAGCTCAGTG-AGCGTGGA 1089
||||||||||||| ||| |||||| |||||||||||||| || ||||| | || ||
Sbjct 1001 AACGATCTGAAACCTAACAAGATTCGCAACAGTCAGGTGATAAGTTCAGTTCAA-GTTGA 1059
Query 1090 TTTTCCGGTGGCGGAAGCGACGGTGGAGGAATTAGTGAAAGCTATGGGGGAAGCGAAGGA 1149
|||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1060 TTTTCCGGTGGCAGATGCGACGGTGGAGGAATTGGTGAAAGCTATGGCGGAAGCGAAGGA 1119
Query 1150 TGAGAGATGTGGAATTGAGGAGATCGGAGAGAGTTGCGATGGGAATTTGGATTTTGTTGT 1209
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1120 TGAGAGAAGTGGAATTGAGGAGATCGGAGAGAGTTGTGATGGGAATTTGGATTTTGTTGT 1179
Query 1210 TTATGGAGCGAAATTGACGTTTCTGGATCTGACTGGTGAGGATTTGTATGAGGCGAAAGT 1269
|||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1180 TTATGGTGCGAAATTGACGTTTTTGGATCTGAGTGGTGAGGATTTGTATGAGGCGAAAGT 1239
Query 1270 GATGGGGAAGTCGCCGGAGTCGGTTTATTGTAATGTGGAGGGGATAGGGGAGGAGGGATT 1329
|||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||
Sbjct 1240 GATGGGGAAGTCGCCGGAGTCGGTTTATTGTAATGTTGAGGGGGTTGGGGAGGAAGGATT 1299
Query 1330 GGTGGTTGTTTACGCGGCGGCGAAATCGGAGGAGAGGGTTGTGACGGTTACGTTGCCGGA 1389
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 1300 GGTGGTTGTTTACGCGGCGGCGAAATCGGAGGAGAGGATGGTGACGGTGACGTTGCCGGA 1359
Query 1390 GGAAGAGATGGAGAGGGTAAAATTGGAATTTAAGAAGTTTGGTTTGA 1436
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 GGAAGAGATGGAGAGGGTAAAATTGGAATTTAAGAAGTTTGGTTTGA 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61553835920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5