BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13930.1 Length=1822 Score E Sequences producing significant alignments: (Bits) Value Ahg947030 jgi|Araly1|947030|scaffold_703259.1 2438 0.0 Ahg493523 jgi|Araly1|493523|fgenesh2_kg.7__2956__AT4G13890.1 1358 0.0 > Ahg947030 jgi|Araly1|947030|scaffold_703259.1 Length=1456 Score = 2438 bits (1320), Expect = 0.0 Identities = 1408/1451 (97%), Gaps = 3/1451 (0%) Strand=Plus/Plus Query 63 ccATTCAACAATCTACAAAGAAGATGGAACCAGTCTCTTCATGGGGTAACACCTCTCTCG 122 |||||||||||||| | ||||||||||||||| ||||||||||| |||||||| ||| Sbjct 1 CCATTCAACAATCT-C--CGAAGATGGAACCAGTTTCTTCATGGGGAAACACCTCCCTCA 57 Query 123 TCTCCGTAGATCCAGAGATCCACGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAG 182 || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 58 TCACCGTAGATCCAGAGATCCATGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAG 117 Query 183 GAATCGAACTTATCGCTTCCGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAA 242 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 GAATCGAACTTATCGCCTCCGAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAA 177 Query 243 GTGCCTTAACCAACAAATACTCCGAAGGTATTCCTGGTAATCGTTATTACGGAGGTAACG 302 |||| ||||||||||||||||| |||||||| |||||||||||||| || |||||||||| Sbjct 178 GTGCTTTAACCAACAAATACTCTGAAGGTATGCCTGGTAATCGTTACTATGGAGGTAACG 237 Query 303 AATTCATCGATGAGATCGAGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTG 362 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 AATTCATCGATCAGATCGAGAATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTG 297 Query 363 ATCCAGCAGCGTGGGGCGTTAATGTTCAGCCGTATTCTGGATCTCCGGCAAATTTCGCTG 422 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 298 ATCCAGCAGCGTGGGGCGTTAATGTTCAGCCTTATTCTGGATCTCCGGCGAATTTCGCTG 357 Query 423 CTTACACGGCTTTGCTTCAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTG 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 CTTACACGGCTTTGCTTCAGCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTG 417 Query 483 GTCATTTGACTCATGGTTACTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCT 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GTCATTTGACTCATGGTTACTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCT 477 Query 543 ACTTTGAGAGTCTTCCGTATAAGGTGAATTTCACCACTGGTTACATTGATTACGATAAGC 602 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 478 ACTTTGAGAGTCTTCCGTATAAGGTGAATTTCACCACTGGTTACATTGATTACGAGAAGC 537 Query 603 TTGAAGAGAAGGCGTTGGATTTCAGGCCTAAGTTGCTTATCTGTGGTGGTAGTGCGTATC 662 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 538 TTGAAGAGAAGGCGTTGGATTTTAGGCCAAAGTTGCTTATCTGTGGTGGTAGTGCGTATC 597 Query 663 CTAGGGATTGGGATTACGCTAGATTTAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGC 722 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 598 CTAGGGATTGGGATTACGCTAGATTGAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGC 657 Query 723 TTTGTGACATGGCTCACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCATTTG 782 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 658 TTTGTGATATGGCTCACATCAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCGTTTG 717 Query 783 AGTACTGTGACGTTGTGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTA 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 AGTACTGTGACGTTGTGACAACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTA 777 Query 843 TGATTTTCTACAGGAAGGGTCCAAAACCACCAAAGAAGGGTCAACCCGAGGGTGCAGTCT 902 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 778 TGATCTTCTACAGGAAGGGCCCAAAACCACCAAAGAAGGGTCAACCCGAGGGTGCAGTCT 837 Query 903 ATGATTTTGAGGACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACA 962 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 ATGACTTTGAGGACAAAATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACA 897 Query 963 ATCACCAGATTGGTGCTCTAGCTGTTGCGTTGAAGCAGGCTAATACTCCTGGGTTCAAGG 1022 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 ATCACCAGATCGGTGCTCTAGCTGTTGCGTTGAAGCAGGCTAATACTCCTGGGTTCAAGG 957 Query 1023 TCTACGCAAAACAAGTGAAAGCCAATGCTGTTGCCCTTGGAAACTACCTAATGAGCAAGG 1082 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 958 TCTACGCAAAACAGGTGAAAGCCAATGCTGTTGCACTTGGAAACTACCTAATGAGCAAGG 1017 Query 1083 GTTACCAGATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTC 1142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 GTTACCAGATTGTGACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTC 1077 Query 1143 TTGGATTGACCGGAAACAAGGTTGAGAAGCTCTGCGATCTGTGCAGCATTACATTGAACA 1202 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1078 TTGGATTGACCGGTAACAAGGTTGAGAAGCTCTGCGATCTGTGCAGCATTACTTTGAACA 1137 Query 1203 AGAACGCAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTGCAC 1262 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1138 AGAATGCAGTATTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCGGTACAC 1197 Query 1263 CCGCGATGACATCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTGA 1322 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 CCGCAATGACTTCGAGAGGATTGGTGGAGAAGGACTTTGAGCAGATAGGAGAATTCCTGA 1257 Query 1323 GCCGTGCAGTGACACTGACGTTGGACATCCAAAAGACATACGGTAAGTTGTTGAAGGACT 1382 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1258 GCCGTGCAGTGACACTGACATTGGACATCCAGAAGACATACGGTAAGTTGTTGAAGGACT 1317 Query 1383 TCAACAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGATGTCGAGAAGT 1442 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1318 TCAACAAGGGTTTGGTGAACAACAAAGATCTCGATCAGCTCAAGGCTGACGTCGAGAAGT 1377 Query 1443 TCTCGGCGTCTTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGA 1502 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 TCTCGGCCTCGTATGAGATGCCTGGATTCCTCATGTCTGAGATGAAGTACAAGGATTAGA 1437 Query 1503 GATCTTTCTCT 1513 ||||| ||||| Sbjct 1438 GATCTCTCTCT 1448 > Ahg493523 jgi|Araly1|493523|fgenesh2_kg.7__2956__AT4G13890.1 Length=1175 Score = 1358 bits (735), Expect = 0.0 Identities = 1037/1183 (88%), Gaps = 20/1183 (2%) Strand=Plus/Plus Query 84 AGATGGAACCAGTCTCTTCATGGGGTAACAC-CTCTCTCGTCTCCGTAGATCCAGAGATC 142 |||||||| |||||||||| ||||| ||||| | |||| |||||||| ||||| |||||| Sbjct 3 AGATGGAATCAGTCTCTTCTTGGGGAAACACGC-CTCTTGTCTCCGTCGATCCCGAGATC 61 Query 143 CACGACCTAATCGAGAAGGAGAAACGTCGGCAATGTCGAGGAATCGAACTTATCGCTTCC 202 ||||||||||||||||||||||||| |||||||||||||||||||||||| || || || Sbjct 62 CACGACCTAATCGAGAAGGAGAAACATCGGCAATGTCGAGGAATCGAACTCATAGCCGCC 121 Query 203 GAGAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGAAGTGCCTTAACCAACAAATAC 262 ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||| Sbjct 122 GAGAATTTCACTTCCTTGGCTGTCATGGAAGCTCTTGGAAGTGCCTTAACCAACAAATAC 181 Query 263 TCCGAAGGTATTCCTGGTAATCGTTATTACGGAGGTAACGAATTCATCGATGAGATCGAG 322 || |||||||| |||||||||||||| |||||||||| ||| |||||||||||||||||| Sbjct 182 TCGGAAGGTATGCCTGGTAATCGTTACTACGGAGGTACCGAGTTCATCGATGAGATCGAG 241 Query 323 AATCTTTGCCGTTCAAGAGCTCTCGAAGCTTTCCATTGTGATCCAGCAG-CGTGGGGCGT 381 | ||| ||||| ||| | |||||||| ||||||||||||||||||| || |||||||| Sbjct 242 AGTCTCTGCCGCTCACGCGCTCTCGAGGCTTTCCATTGTGATCCAG-AGAAATGGGGCGT 300 Query 382 TAATGTTCAGCCGTATTCTGGATCTCCGGCAAATTTCGCTGCTTACACGGCTTTGCTTCA 441 |||||||||||| || ||||| ||||| ||||| ||||| || |||||||| ||||| || Sbjct 301 TAATGTTCAGCCTTACTCTGGTTCTCCTGCAAACTTCGCCGCCTACACGGCCTTGCTCCA 360 Query 442 GCCTCACGATCGTATCATGGGGCTTGATTTGCCTTCAGGTGGTCATTTGACTCATGGTTA 501 |||||| |||||||||||| |||||||| ||||||||||||||||| | || |||||||| Sbjct 361 GCCTCATGATCGTATCATGAGGCTTGATCTGCCTTCAGGTGGTCATCTAACGCATGGTTA 420 Query 502 CTATACATCTGGTGGTAAGAAGATCTCTGCGACTTCGATCTACTTTGAGAGTCTTCCGTA 561 |||||| |||||||| ||||| || || ||||| ||||||||||| || | |||| ||| Sbjct 421 CTATACCTCTGGTGGGAAGAATATATCCGCGACCTCGATCTACTTCGAAAACCTTCTGTA 480 Query 562 TAAGGTGAATTTCACCACTGGTTACATTGATTACGATAAGCTTGAAGAGAAGGCGTTGGA 621 |||||| ||| |||||||||||||||||||||||| |||||||| ||||| || |||| Sbjct 481 CAAGGTGGATTCCACCACTGGTTACATTGATTACGACAAGCTTGAGGAGAAAGCAATGGA 540 Query 622 TTTCAGGCCTAAGTTGCTTATCTGTGGTGGTAGTGCGTATCCTAGGGATTGGGATTACGC 681 ||| ||||||||||| | |||||||| || | | | || |||||||| ||||||||||| Sbjct 541 TTTTAGGCCTAAGTTAATCATCTGTGGAGGCACTTCTTACCCTAGGGAATGGGATTACGC 600 Query 682 TAGATTTAGAGCTATTGCTGATAAGGTTGGAGCTCTTTTGCTTTGTGACATGGCTCACAT 741 || || | || | | || ||||||||||||||||||||||||||||| ||||||||||| Sbjct 601 GAGGTTCAAAGTTGTCGCGGATAAGGTTGGAGCTCTTTTGCTTTGTGATATGGCTCACAT 660 Query 742 CAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAAACCCATTTGAGTACTGTGACGTTGTGAC 801 ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| Sbjct 661 CAGTGGTCTCGTTGCTGCTCAGGAAGCTGCAGACCCGTTCGAGTACTGTGACGTTGTGAC 720 Query 802 AACCACAACCCACAAGAGTTTGAGGGGTCCAAGGGCTGGTATGAT-TTTCTACAGGAAGG 860 |||| |||| |||||||||||||| |||||||||||||||||||| ||| || || |||| Sbjct 721 AACCTCAACTCACAAGAGTTTGAGAGGTCCAAGGGCTGGTATGATCTTT-TATAGAAAGG 779 Query 861 GTCCAAAACCA-CCAAAGAAGGGTCAACCCGAGGGTGCAGTCTATGATTTTGAGGACAAA 919 | ||||||||| |||| |||||| ||||||||||||| |||||| |||||||| | ||| Sbjct 780 GCCCAAAACCAGCCAA-GAAGGGCCAACCCGAGGGTGAAGTCTACGATTTTGACAAAAAA 838 Query 920 ATCAACTTTGCTGTATTCCCTGCGCTTCAAGGTGGTCCTCACAATCACCAGATTGGTGCT 979 ||||||||||| || ||||||||||||||| |||||||||||||| || ||||||||||| Sbjct 839 ATCAACTTTGCGGTGTTCCCTGCGCTTCAAAGTGGTCCTCACAATAACAAGATTGGTGCT 898 Query 980 CTAGCTGTTGCGTTGAAGCAGGCTAATA-CTCCTGGGTTCAAGGTCTACGCAAAACAAGT 1038 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| || Sbjct 899 CTAGCTGTTGCGTTGAAGCAGGCTA-TGGCTCCTGGGTTCAAGGTCTACGCAAAACAGGT 957 Query 1039 GAAAGCCAATGCTG-TTGCCCTTGGAAACTACCTAATGAGCAAGGGTTACCAG-ATTGTG 1096 |||||||||||||| ||||| ||||||||||||||||| | ||||| || | ||||| Sbjct 958 GAAAGCCAATGCTGCTTGCC-TTGGAAACTACCTAATGGGAAAGGGATATT-GTATTGTA 1015 Query 1097 ACCAATGGAACTGAGAACCACCTTGTTCTCTGGGATCTTCGCCCTCTTGGATTGACCGGA 1156 ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1016 ACCGGTGGAACTGATAACCACCTTGTTCTTTGGGATCTTCGCCCTCTTGGATTGACCGGT 1075 Query 1157 AACAAGGTTGAGAAGCTCT-GCGA-TCTGTGC-AGCATTACATTGAACAAGAACGCAGTA 1213 ||||||||||||||| | | | || | || || | |||||| ||||||| ||| || ||| Sbjct 1076 AACAAGGTTGAGAAGGT-TAGTGAAT-TGGGCTA-CATTACTTTGAACAGGAATGCGGTA 1132 Query 1214 TTTGGAGACAGTAGTGCTCTTGCTCCTGGAGGTGTAAGAATCG 1256 || ||||||| |||| |||||||||||||||||||||||||| Sbjct 1133 TTCGGAGACACTAGTTTTCTTGCTCCTGGAGGTGTAAGAATCG 1175 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68410080020 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5