BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G13940.1 Length=1990 Score E Sequences producing significant alignments: (Bits) Value Ahg947029 jgi|Araly1|947029|scaffold_703258.1 2442 0.0 Ahg479893 jgi|Araly1|479893|fgenesh2_kg.3__2594__AT3G23810.1 1633 0.0 > Ahg947029 jgi|Araly1|947029|scaffold_703258.1 Length=1498 Score = 2442 bits (1322), Expect = 0.0 Identities = 1443/1502 (96%), Gaps = 5/1502 (0%) Strand=Plus/Plus Query 47 CAAATCTCAGATCTAGCTCAACCATGGCGTTGCTCGTCGAGAAGACCTCAAGTGGCCGTG 106 |||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1 CAAATCTCAGATCTAG---AAAAATGGCGTTGCTCGTCGAGAAGACCTCAAGTGGCCGTG 57 Query 107 AATACAAGGTCAAAGACATGTCTCAAGCCGATTTCGGTCGTCTCGAACTCGAGCTCGCCG 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 AATACAAGGTCAAAGACATGTCTCAAGCCGATTTCGGTCGTCTCGAACTCGAGCTCGCCG 117 Query 167 AAGTTGAGATGCCTGGACTCATGGCTTGTCGTACCGAATTCGGACCTTCTCAGCCATTCA 226 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 118 AAGTTGAGATGCCTGGACTCATGGCTTGTCGTACCGAGTTCGGACCTTCTCAACCATTCA 177 Query 227 AAGGCGCTAGAATCACCGGATCTCTTCACATGACCATCCAAACCGCCGTACTCATCGAAA 286 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 178 AAGGCGCTAGAATCACCGGATCTCTTCACATGACGATCCAAACCGCCGTACTCATCGAAA 237 Query 287 CCCTAACTGCTCTCGGTGCTGAAGTCAGATGGTGTTCCTGCAACATCTTTTCCACTCAAG 346 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 238 CCCTAACTGCTCTCGGTGCTGAAGTCAGATGGTGTTCCTGCAACATCTTCTCTACTCAAG 297 Query 347 ACCACGCCGCCGCAGCCATCGCTCGTGACTCCGCCGCTGTTTTCGCCTGGAAAGGTGAGA 406 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ACCACGCCGCCGCCGCAATCGCTCGTGACTCCGCCGCTGTTTTCGCCTGGAAAGGTGAGA 357 Query 407 CTCTTCAGGAGTACTGGTGGTGTACCGAGCGTGCTCTAGATTGGGGTCCAGGTGGTGGTC 466 | ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||| Sbjct 358 CGCTTCAGGAGTATTGGTGGTGTACGGAACGTGCTCTTGATTGGGGTCCAGGTGGTGGTC 417 Query 467 CTGATCTGATTGTTGATGATGGTGGTGACGCTACTCTTTTGATTCATGAGGGTGTTAAAG 526 |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| Sbjct 418 CTGATCTGATTGTTGATGATGGTGGTGATGCTACGCTTTTGATCCATGAGGGTGTTAAAG 477 Query 527 CTGAGGAGATCTTTGAGAAGACTGGTCAAGTTCCTGATCCTACTTCTACTGATAACCCTG 586 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 CTGAAGAGATTTTTGAGAAGACTGGTCAAGTTCCTGATCCTACTTCTACTGATAACCCTG 537 Query 587 AGTTTCAGATCGTGTTGTCTATTATCAAGGAAGGTCTTCAAGTTGATCCTAAGAAGTACC 646 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 538 AGTTTCAGATCGTGTTGTCTATTATCAAGGAAGGTCTTCAGGTTGATCCTAAGAAGTACC 597 Query 647 ACAAGATGAAGGAGAGACTTGTTGGTGTCTCTGAGGAAACTACCACTGGTGTTAAGAGGC 706 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 598 ATAAGATGAAGGAGAGACTTGTTGGTGTCTCTGAGGAAACTACTACTGGTGTTAAGAGGC 657 Query 707 TTTACCAGATGCAGCAAAATGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTG 766 |||| ||||||||| ||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 658 TTTATCAGATGCAGGAAAATGGAACTCTCTTGTTCCCTGCCATTAACGTCAATGACTCTG 717 Query 767 TCACCAAGAGCAAGTTCGACAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCA 826 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 718 TCACCAAGAGCAAGTTCGACAATTTGTATGGTTGCCGTCACTCACTTCCTGATGGTCTCA 777 Query 827 TGAGGGCCACTGATGTCATGATCGCTGGAAAGGTTGCTGTTATCTGTGGATATGGTGATG 886 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TGAGGGCCACTGATGTTATGATCGCTGGAAAGGTTGCTGTTATCTGTGGATATGGTGATG 837 Query 887 TTGGAAAGGGTTGTGCTGCTGCCATGAAGACTGCTGGTGCTAGAGTCATTGTGACTGAGA 946 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 TTGGAAAGGGTTGTGCTGCTGCCATGAAGACTGCTGGTGCTAGAGTCATTGTGACTGAGA 897 Query 947 TTGATCCCATCTGTGCCCTTCAAGCTTTGATGGAAGGACTTCAGGTTCTTACCCTTGAGG 1006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 TTGATCCCATCTGTGCCCTTCAAGCTTTGATGGAAGGACTTCAGGTTCTTACCCTTGAGG 957 Query 1007 ATGTTGTCTCAGAAGCTGATATCTTTGTCACCACCACCGGTAACAAAGACATCATCATGG 1066 |||||||||| ||||||||||||||||| ||||| || ||||||||||| |||||||||| Sbjct 958 ATGTTGTCTCTGAAGCTGATATCTTTGTGACCACTACTGGTAACAAAGATATCATCATGG 1017 Query 1067 TCGACCACATGAGGAAGATGAAGAACAACGCTATTGTGTGCAACATTGGTCACTTTGACA 1126 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1018 TTGACCACATGAGGAAGATGAAGAACAATGCTATTGTGTGCAACATTGGTCACTTTGACA 1077 Query 1127 ATGAGATTGACATGCTTGGACTTGAGACTTACCCTGGTGTGAAGCGTATCACCATCAAGC 1186 | ||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 1078 ACGAGATCGACATGCTCGGATTTGAGACTTACCCTGGTGTTAAGCGTATCACCATCAAGC 1137 Query 1187 CACAGACTGACAGGTGGGTGTTCCCAGAGACCAAGGCTGGAATCATTGTCTTGGCTGAGG 1246 | ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| Sbjct 1138 CCCAGACTGACAGGTGGGTGTTCCCAGAGACAAAGACCGGAATCATTGTCTTGGCTGAGG 1197 Query 1247 GTCGTCTGATGAACTTGGGTTGTGCCACTGGTCACCCAAGTTTCGTGATGTCTTGCTCTT 1306 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 GTCGTCTCATGAACTTGGGTTGTGCCACTGGTCACCCAAGTTTCGTGATGTCTTGCTCTT 1257 Query 1307 TCACCAACCAGGTGATTGCCCAGCTCGAGCTCTGGAACGAGAAAG-CAAGCGGAAAGTAC 1365 ||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||||| Sbjct 1258 TCACCAACCAGGTGATTGCCCAGCTTGAGCTCTGGAACGAGAA-GTCAAGCGGTAAGTAC 1316 Query 1366 GAGAAGAAGGTGTACGTTCTTCCCAAGCATTTGGATGAGAAGGTTGCATTACTTCACTTG 1425 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1317 GAGAAGAAGGTGTACGTTCTTCCCAAGCATTTGGATGAGAAGGTTGCAGCACTTCACTTG 1376 Query 1426 GGCAAGCTTGGAGCCAGGCTTACAAAGCTGTCAAAGGACCAATCTGACTACGTCAGCATT 1485 ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 1377 GGCAAGCTTGGAGCCAGGCTTACTAAGCTGTCAAAGGACCAATCTGACTACATCAGCATT 1436 Query 1486 CCAATTGAGGGACCATACAAGCCTCCTCACTACAGGTACTgagagagagagagagTCGAC 1545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1437 CCAATTGAGGGACCATACAAGCCTCCTCACTACAGGTACTGAGAGAGAGAGAGAGTGGAC 1496 Query 1546 AA 1547 || Sbjct 1497 AA 1498 > Ahg479893 jgi|Araly1|479893|fgenesh2_kg.3__2594__AT3G23810.1 Length=1712 Score = 1633 bits (884), Expect = 0.0 Identities = 1282/1475 (87%), Gaps = 23/1475 (2%) Strand=Plus/Plus Query 70 ATGGCGTTGCTCGTCGAGAAGACCTCAAGTGGCCGTGAATACAAGGTCAAAGACATGTCT 129 ||||| ||||| || ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 43 ATGGCTTTGCTTGTTGAGAAAACATCAAGTGGCCGTGAATACAAGGTCAAAGACATGTCT 102 Query 130 CAAGCCGATTTCGGTCGTCTCGAACTCGAGCTCGCCGAAGTTGAGATGCCTGGACTCATG 189 || ||||| ||||| || |||||| ||||||| |||||||| || ||||||||||| | Sbjct 103 CAGGCCGACTTCGGCCGGCTCGAAATCGAGCTAGCCGAAGTCGAAATGCCTGGACTTGTC 162 Query 190 GCTTGTCGTACCGAATTCGGACCTTCTCAGCCATTCAAAGGCGCTAGAATCACCGGATCT 249 |||| ||||| ||||||||||| ||||||||| | ||||| || |||||||||||||| Sbjct 163 TCTTGCCGTACTGAATTCGGACCATCTCAGCCACTAAAAGGAGCAAGAATCACCGGATCA 222 Query 250 CTTCACATGACCATCCAAACCGCCGTACTCATCGAAACCCTAACTGCTCTCGGTGCTGAA 309 || |||||||| || |||||||| || | |||||||| |||| |||||||| |||||| Sbjct 223 CTCCACATGACGATTCAAACCGCTGTTTTGATCGAAACGTTAACCGCTCTCGGCGCTGAA 282 Query 310 GTCAGATGGTGTTCCTGCAACATCTTTTCCACTCAAGACCACGCCGCCGCAGCCATCGCT 369 |||||||||||||| ||||||||||| || |||||||| |||||||| ||||| || ||| Sbjct 283 GTCAGATGGTGTTCTTGCAACATCTTCTCAACTCAAGATCACGCCGCGGCAGCGATTGCT 342 Query 370 CGTGACTCCGCCGCTGTTTTCGCCTGGAAAGGTGAGACTCTTCAGGAGTACTGGTGGTGT 429 ||||| |||||||| || ||||| |||||||||||||||||||| || || ||||||||| Sbjct 343 CGTGATTCCGCCGCGGTGTTCGCTTGGAAAGGTGAGACTCTTCAAGAATATTGGTGGTGT 402 Query 430 ACCGAGCGTGCTCTAGATTGGGGTCCAGGTGGTGGTCCTGATCTGATTGTTGATGATGGT 489 || ||| | ||||| ||||||||||| ||||||||||||||||| || |||||||| ||| Sbjct 403 ACGGAGAGAGCTCTTGATTGGGGTCCTGGTGGTGGTCCTGATCTTATCGTTGATGACGGT 462 Query 490 GGTGACGCTACTCTTTTGATTCATGAGGGTGTTAAAGCTGAGGAGATCTTTGAGAAGACT 549 ||||| ||||| || ||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 463 GGTGATGCTACGCTGTTGATCCATGAGGGTGTTAAAGCTGAAGAGATCTTTGAGAAGACT 522 Query 550 GGTCAAGTTCC-TGATCCTACTTCTACTGATAA-CCCTGAGTTTCAGATCGTGTTGTCTA 607 ||| | ||||| ||| || || ||||| ||||| ||| |||||||||||||||||| | | Sbjct 523 GGT-ACGTTCCCTGACCCGACGTCTACGGATAATCCC-GAGTTTCAGATCGTGTTGGCGA 580 Query 608 TTATCA-AGGAAGGTCTTCAAGTTGATCCTAAGAAGTACCACAAGATGAAGGAGAGACTT 666 |||||| || | ||||||||||||||||| ||||||||||| ||||||||||||||| || Sbjct 581 TTATCAGAG-ACGGTCTTCAAGTTGATCCCAAGAAGTACCATAAGATGAAGGAGAGA-TT 638 Query 667 G-TTGGTGTCTCTGAGGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAGCAAAA 725 | ||||||| ||||| || |||||||||||||||||||||||||| ||||||||| | | Sbjct 639 GGTTGGTGTTTCTGAAGAGACTACCACTGGTGTTAAGAGGCTTTATCAGATGCAGGAGAC 698 Query 726 TGGAACTCTTTTGTTCCCTGCCATTAACGTTAACGACTCTGTCACCAAGAGCAAGTTCGA 785 ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 699 TGGAACTCTCTTGTTCCCTGCCATTAACGTCAATGACTCTGTCACCAAGAGCAAGTTTGA 758 Query 786 CAACTTGTATGGTTGCCGTCACTCACTCCCTGATGGTCTCATGAGGGCCACTGATGTCAT 845 ||||||||| || ||||| ||||| || |||||||||||||||||||| |||||||| || Sbjct 759 CAACTTGTACGGATGCCGACACTCGCTACCTGATGGTCTCATGAGGGCTACTGATGTTAT 818 Query 846 GATCGCTGGAAAGGTTGCTGTTATCTGTGGATATGGTGATGTTGGAAAGGGTTGTGCTGC 905 ||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| Sbjct 819 GATTGCTGGAAAGGTTGCTGTTATCTGTGGTTATGGTGATGTAGGAAAAGGTTGTGCTGC 878 Query 906 TGCCATGAAGACTGCTGGTGCTAGAGTCATTGTGACTGAGATTGATCCCATCTGTGCCCT 965 || ||||| || || |||||| | ||||| ||||||||||||||||| |||||||| || Sbjct 879 AGCAATGAAAACCGCGGGTGCTCGTGTCATAGTGACTGAGATTGATCCAATCTGTGCTCT 938 Query 966 TCAAGCT-TTGATGGAAGGACTTCAGGTTCTTACCCTTGAGGATGTTGTCTC-AGAAGCT 1023 ||| ||| || |||||||| ||||| ||||| || |||||||||||| | || ||||||| Sbjct 939 TCAGGCTCTT-ATGGAAGGTCTTCAAGTTCTAACTCTTGAGGATGTTCT-TCCAGAAGCT 996 Query 1024 GATATCTTTGTCACCACCACCGGTAACAAAGACATCATCATGGTCGACCACATGAGGAAG 1083 ||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||||||||| Sbjct 997 GATATCTTTGTGACCACTACTGGTAACAAAGATATCATCATGGTTGACCACATGAGGAAG 1056 Query 1084 ATGAAGAACAACGCTATTGTGTGCAACATTGGTCACTTTGACAATGAGATTGACATGCTT 1143 ||||||||||| || ||||| || ||||||||||| |||||||| || || ||||||||| Sbjct 1057 ATGAAGAACAATGCCATTGTCTGTAACATTGGTCATTTTGACAACGAAATCGACATGCTT 1116 Query 1144 GGACTTGAGACTTACCCTGGTGTGAAGCGTATCACCATCAAGCCACAGACTGACAGGTGG 1203 |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| Sbjct 1117 GGACTTGAGACTTACCCTGGTGTGAAACGTATCACCATCAAGCCACAGACCGATAGGTGG 1176 Query 1204 GTGTTCCCAGAGACCAAGGCTGGAATCATTGT-CTTGGCTGAGGGTCGTCTGATGAACTT 1262 ||||| ||||| |||||| |||| |||||||| || | |||| |||||| |||||||||| Sbjct 1177 GTGTTTCCAGACACCAAGTCTGGTATCATTGTTCTAG-CTGAAGGTCGTTTGATGAACTT 1235 Query 1263 GGGTTGTGCCACTGGTCACCCAAGTTTCGTGATGTCTTGCTCTTTCACCAACCAGGTGAT 1322 ||| || || ||||| ||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 1236 GGGATGCGCTACTGGACACCCGAGTTTCGTGATGTCGTGCTCATTCACCAACCAGGTGAT 1295 Query 1323 TGCCCAGCTCGAGCTCTGGAACGAGAAAG-CAAGCGGAAAGTACGAGAAGAAGGTGTACG 1381 ||| ||||| ||||||||||||||||| | | ||||| ||||| |||||||||||||| | Sbjct 1296 TGCACAGCTTGAGCTCTGGAACGAGAA-GTCGAGCGGGAAGTATGAGAAGAAGGTGTATG 1354 Query 1382 TTCTTCCC-AAGCATTTGGATGAGAAGGTTGCATT-ACTTCACTTGGGCAAGCTTGGAGC 1439 || || || || || |||||||||||||| || | ||||||||| || ||||| || || Sbjct 1355 TT-TTGCCTAAACACTTGGATGAGAAGGTAGC-TGCACTTCACTTAGGTAAGCTCGGTGC 1412 Query 1440 CAGGCTTACAAAGCTGT-CAAAGGACCAATCTGACTACGTCAGCATTCCAATTGAGGGAC 1498 || || || ||||| | | ||||||||||||||||| |||||||| || ||||| || | Sbjct 1413 AAGACTCACCAAGCT-TACCAAGGACCAATCTGACTATGTCAGCATACCTATTGAAGGTC 1471 Query 1499 CATACAAGCCTCCTCACTACAGGTACTgagagaga 1533 | ||||||||| ||| |||||||||||||| ||| Sbjct 1472 CCTACAAGCCTGTTCATTACAGGTACTGAGA-AGA 1505 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74809241180 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5