BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14440.1 Length=1009 Score E Sequences producing significant alignments: (Bits) Value Ahg946934 jgi|Araly1|946934|scaffold_703163.1 1125 0.0 Ahg946935 jgi|Araly1|946935|scaffold_703164.1 584 4e-166 > Ahg946934 jgi|Araly1|946934|scaffold_703163.1 Length=758 Score = 1125 bits (609), Expect = 0.0 Identities = 708/756 (94%), Gaps = 6/756 (1%) Strand=Plus/Plus Query 75 TCCTTAACGT-ACGCACCATGTGTACGTTAGAGAAGCGCGGCGATCTCTTTCTCCTAACC 133 |||||||| | | ||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 5 TCCTTAACCTGA-GCACCATGTGTACGTTAGAGAAGCGTGGCGATCTCTTTCACCTAACC 63 Query 134 CTAACCGGCGAAGACGAGCACAGATTCCACCCCGACACGATCGCCTCTGTTCTCTCGCTT 193 |||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 64 CTAACCGGTGACGACGAGCACAGATTCCACCCGGACACGATCGCCTCCGTTCTCTCGCTT 123 Query 194 CTTGAACAAGC-AAAGTCTCAATCCACAAAAGGATCCGTCCTCATCACTACCGGTCACGG 252 ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 124 CTTGAACAAGCTAAA-TCTCAATCTACAAAAGGATCCGTCCTCATCACTACCGGTCACGG 182 Query 253 AAAGTTCTTCTCCAATGGCTTTGACCTCGCGTGGGCTCAATCCGCTGGACACGGTGCTAT 312 |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct 183 AAAGTTCTTCTCCAATGGCTTTGATCTCGCATGGGCCCAATCCGCTGGACACGGGGCTAT 242 Query 313 AAAACGGATGCACCAAATGGTCAAATCCTTTAAACCGGTGTTAGCCGCCCTCCTCGATCT 372 | |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| Sbjct 243 AGAACGGATGCACCAAATGGTCAAATCCTTCAAACCCGTGTTAGCGGCCCTCCTCGATCT 302 Query 373 TCCAATGCCGACGATCGCCGCCTTGAACGGCCACGCGGCAGCCTCGGGGCTGATGTTTGC 432 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 303 TCCAATGCCGACGATCGCCGCCTTGAACGGCCACGCAGCCGCCTCGGGGCTGATGTTTGC 362 Query 433 GCTGAGCCACGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATATATGAGCGAGGT 492 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 363 GCTGAGCCATGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATACATGAGCGAGGT 422 Query 493 GGACATCGGGCTACCGGTGCCGGACTACTTCTCGGCGTTGGTCGTGGCTAAGGTTGGGTC 552 |||||||||||| |||||||| |||||||||||||||||||| || |||||||| ||||| Sbjct 423 GGACATCGGGCTGCCGGTGCCAGACTACTTCTCGGCGTTGGTTGTAGCTAAGGTCGGGTC 482 Query 553 AGGTATCGCGAGAAGGGAGCTGTTACTGAGCGGGAAGAAGCTCAAAGGAGAAGAAGCGGT 612 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 483 AGGTATCGCGAGAAGGGAGCTGTTGCTGAGCGGGAAGAAGCTCAAAGGAGAAGACGCGGT 542 Query 613 GGCTCTCGGGATCGTGGACTCAGCGGCGCATGATAGTGCGGAAGGTGTGGTGGAGGCTAC 672 ||||||||||||||||||||| |||||||| ||||| || |||||||| ||||||||||| Sbjct 543 GGCTCTCGGGATCGTGGACTCCGCGGCGCACGATAGCGCTGAAGGTGTTGTGGAGGCTAC 602 Query 673 AGTGAGCCTTGGAGAAAGTTTGGCCGCTAAGAAATGGAATGGTGAGGTGTATGCAACCAT 732 |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |||| Sbjct 603 AGTGAGCCTTGGGGAAAGTTTGGCTGCTAAGAAATGGAATGGAGAGGTGTATGCATCCAT 662 Query 733 TAGGAAGA-GTTTGTATCCGGAGCTTTGTCGGATGGTTGATTTAACGGCAAATAACTTGG 791 ||||| || |||||||||||||||||||||||||| | || |||||||| |||||||||| Sbjct 663 TAGGA-GAAGTTTGTATCCGGAGCTTTGTCGGATGCTGGAGTTAACGGCCAATAACTTGG 721 Query 792 CCACTCACAACCTCTAGAAACTCTCATTGTCTTGTT 827 | |||||||| ||||||||||||||||||||||||| Sbjct 722 CAACTCACAATCTCTAGAAACTCTCATTGTCTTGTT 757 > Ahg946935 jgi|Araly1|946935|scaffold_703164.1 Length=765 Score = 584 bits (316), Expect = 4e-166 Identities = 579/704 (82%), Gaps = 26/704 (4%) Strand=Plus/Plus Query 88 CACCATGTGTACGTTAGAGAAGCGCGGCGATCTCTTTCTCCTAACCCTAACCGGCGAAGA 147 ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct 19 CACCATGTGTACGTTAGAGAAACGCGGCGATCTCTTCCTCCTAACCCTAACCGGCGACGG 78 Query 148 CGAGCACAGATTCCACCCCGACACGATCGCCTCTGTTCTCTCGCTTCTTGAACAAG-CAA 206 ||| |||||||||||||||||||| |||||| | | ||||| ||||| ||||||| ||| Sbjct 79 CGAACACAGATTCCACCCCGACACAATCGCCACCATCCTCTCCCTTCTCGAACAAGCCAA 138 Query 207 AGTCTCAATCCACAA-AAGGATCCGTCCTCATCACTACCGGTCACGG-AAAGTTCTTCTC 264 | |||||||||| || |||||| |||||||||| |||| | |||| ||| |||||||| Sbjct 139 A-TCTCAATCCA-AACGTGGATCCATCCTCATCACCACCGCTAACGGCAAA-TTCTTCTC 195 Query 265 CAATGGCTTTGACCTCGCGTGGGCTCAATCCGCTGGA--C---A-CGGTGCTATAAAACG 318 ||| ||||| || ||||| ||||||||| |||| ||| | | ||| ||| ||| || Sbjct 196 CAACGGCTTCGATCTCGCCTGGGCTCAAACCGCCGGATCCATAACCGGAGCTGCAAACCG 255 Query 319 GATGCACCAAATGGTCAAATCCTTTAAACCGGTGTTAGCCGCCCTCCTCGATCTTCCAAT 378 | | || |||||||| ||||||| ||||||||| |||| || || | ||||| || || Sbjct 256 GCTTCATCAAATGGTTGAATCCTTCAAACCGGTGGTAGCAGCGCTTTTAGATCTCCCTAT 315 Query 379 GCCGACGATCGCCGCCTTGAACGGCCACGCGGCAGCCTCGGGGCTGATGTTTGCGCTGAG 438 |||||||||||||||||||||||||||||| || ||| |||| |||||| | || | || Sbjct 316 GCCGACGATCGCCGCCTTGAACGGCCACGCAGCCGCCGCGGGACTGATGCTGGCTATAAG 375 Query 439 CCACGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATATATGAGCGAGGTGGACAT 498 ||| || ||||| ||||||||||||||||||||||||| || ||||||||||| ||||| Sbjct 376 CCATGATTACGTGCTCATGAGGAAAGACCGTGGGGTTCTGTACATGAGCGAGGTTGACAT 435 Query 499 CGGGCTACCGGTGCCGGACTACTTCTCGGCGTTGGTC-GTGGCTAAGGTTGGGT-C-AGG 555 |||||| || ||||||| || |||||||||||||| | ||||||| | || | | || Sbjct 436 CGGGCTTTCGATGCCGGATTATTTCTCGGCGTTGGTTAG-GGCTAAGATCGG-TACGAG- 492 Query 556 TATCG-CGAGAAGGGAGCTGTTACTGAGCGGGAAGAAGCTCAAAGGAGAAGAAGCGGTGG 614 | || |||| || |||||||| |||| ||||||||| | | ||||||||||||||||| Sbjct 493 TG-CGGCGAGGAGAGAGCTGTTGTTGAGTGGGAAGAAGATTAGAGGAGAAGAAGCGGTGG 551 Query 615 CTCTCGGGATCGTGGACTCAGCGGCGCATGATAGTGCGGAAGGTGTGGTGGAGGCTACAG 674 | | ||||| || ||||| |||||| ||||||||| ||||||||| || ||||||| | Sbjct 552 GTTTGGGGATTGTTGACTCGGCGGCGTATGATAGTGAGGAAGGTGTTGTTGAGGCTAGTG 611 Query 675 TGAGCCTTGG--AGAAAGTTTGGCCGCT-AAGAAATGGAATGGTGAGGTGTATGCAACCA 731 || ||||||| ||||| || | | | | |||||||||| ||||||||| ||||| | | Sbjct 612 TGCGCCTTGGTGAGAAA-TTAG-CGG-TGAAGAAATGGAGTGGTGAGGTTTATGCGTCGA 668 Query 732 TTAGGAAGAGTTTGTATCCGGAGCTTTGTCGGATGGTTGATTTA 775 ||||||||||||||||||||||||||||| |||| ||| |||| Sbjct 669 TTAGGAAGAGTTTGTATCCGGAGCTTTGTGGGATTCTTGGTTTA 712 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37512950328 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5