BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14500.1 Length=1768 Score E Sequences producing significant alignments: (Bits) Value Ahg493456 jgi|Araly1|493456|fgenesh2_kg.7__2889__AT4G14500.1 2388 0.0 > Ahg493456 jgi|Araly1|493456|fgenesh2_kg.7__2889__AT4G14500.1 Length=1711 Score = 2388 bits (1293), Expect = 0.0 Identities = 1622/1769 (92%), Gaps = 69/1769 (4%) Strand=Plus/Plus Query 10 AATCACCAAACTCAATTAAATaaaaagaaaaaaaTTATTATTATCCcttcttcttcttct 69 ||||||||||||||||||||| | |||| || |||| | | ||| || |||||| Sbjct 2 AATCACCAAACTCAATTAAAT----A-AAAACAA--ATTA-T-T--CTT-ATC-TCTTCT 48 Query 70 tcgtcttcgtcttTGATTCTCCTGATTCATGTCGCTTAAATTTTTAG-CGATCTTC-GAA 127 ||||||||||||| |||||||||||||||||||| |||||||||| | ||||| || ||| Sbjct 49 TCGTCTTCGTCTTCGATTCTCCTGATTCATGTCGTTTAAATTTTT-GACGATC-TCAGAA 106 Query 128 TCCCATTTTCCTTCGGGAATCTGACATTTTTTCTCGGGAAAtttttttATCCAAATCGGA 187 |||||||||||||||||||||||||| ||||||| | |||||||||| | Sbjct 107 TCCCATTTTCCTTCGGGAATCTGACA--TTTTCTC--G---------TATCCAAATC-G- 151 Query 188 GTAAAGTATCGAATCTAGAGAATCCGCTATGGATGAGACCTATTTTGATCTATTGAATTT 247 | || | || | |||||| ||||||||||||||| |||||||||||||||||||| Sbjct 152 G---AG-A-CG----T-GAGAAT-CGCTATGGATGAGACGTATTTTGATCTATTGAATTT 200 Query 248 CTTTAAGAATCCCTCTTTTACAGAGACATTTGTCGACATCTTACTATGCGCAGTTCCGAT 307 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 201 CTTGAAGAATCCCTCTTTTACAGAGACATTTGTCGACATCTTACTATGTGCAGTTCCGAT 260 Query 308 TTGGCTCGCCGTTATGATCGGGTTATTAATCGGATGGTCTTGGCGTCCAAGATGGACCGG 367 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 TTGGCTCGCCGTCATGATCGGGTTATTAATCGGATGGTCTTGGCGTCCAAGATGGACCGG 320 Query 368 TTTGATCTATTTAGGGTTTCGTTCTAAGCTTCGGTTTTTATGGACCGCACCGCCTGGGTT 427 ||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||| || Sbjct 321 TTTGATCTATTTAGGGTTTCGGTCTAAGCTTCGGTTTCTATGGACTGCACCTCCTGGATT 380 Query 428 TGGTGCTCGTCGGCTTTGGCTTGCTTTCACCGCTCTCTCTGCTTTCTCCGTTTGCCGAAC 487 |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || || Sbjct 381 TGGTGCTCGTAGGCTTTGGCTTGCTTTCACCGCTCTTTCTGCTTTCTCCGTTTGTCGCAC 440 Query 488 CATCTGGTCAAGGAATGACACCAGAGCTAATAAATCGGCGACCGGTTCAGCTTCGTCGCA 547 |||||||||||||||||| || ||||||||||||||| |||||||||||| | | Sbjct 441 CATCTGGTCAAGGAATGATACAAGAGCTAATAAATCGTCGACCGGTTCAG---C-T---- 492 Query 548 GACGCCTGTTGAGGATAATGATGAATCAGGATTGGCCTCAAGAGGTAGCGATAACGGGAC 607 ||||| || || | ||||||||||||||| | ||||||||||||||||||| || Sbjct 493 ----CCTGTGGAAGAGAGTGATGAATCAGGATTAGTCTCAAGAGGTAGCGATAACATGAG 548 Query 608 GGTGACAGAGGATATTGTGACAGAGAATGATTTAGAGCATCTGCTTCAGCTGCTTGAAGT 667 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 549 GGTGACAGAGGATATTGTGACAGAGAATGATTTAGAGCATCTGCTTCAATTGCTTGAAGT 608 Query 668 TGGAAATGCAGCTTTGGAATGGCAATCTATGATGGATAAGACTACTCCAAATATGAGCTA 727 ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 609 TGGGAATGCAGCTATGGAATGGCAATCTATGATGGATAAGACTACTCCAAACATGAGCTA 668 Query 728 CCAGGCTTGGCGTCATGAGCCTGAGACAGGTCCTGTTATTTATCGCAGCCGGACTGTGTT 787 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 669 CCAGGCTTGGCGTCATGAGCCTGAGACAGGTCCTGTTATTTATCGCAGTCGAACTGTGTT 728 Query 788 TGAGGATGCAACTCCAGATATTGTTAGGGATTTCTTCTGGGATGATGAGTTTCGACCTAA 847 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 TGAGGATGCAACTCCAGATATTGTTAGGGATTTCTTCTGGGATGATGAGTTTCGACCTAA 788 Query 848 ATGGGATTTCATGCTTGCCAACTTCAAAACGTTGGAGGAGGACACTCAGACAGGAACAAT 907 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 789 ATGGGATTTTATGCTTGCCAACTTCAAAACTTTGGAGGAGGACACTCAGACAGGAACGAT 848 Query 908 GATTGTTCAGTGGAGAAAAAAGTTTCCTTTTTTCTGTAGTGACCGAGAGTATATCATTGG 967 ||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct 849 GATTGTTCAGTGGAGAAAAAAGTTTCCATTTTTCTGCAGCGACCGAGAGTATATCATTGG 908 Query 968 CCGGAGAATATGGGAGTCTGGGAAGAAGTATTATTGTGTCACAAAGGGAGTTCCTTATCC 1027 ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| Sbjct 909 CCGGAGAATATGGGAGTCTGGAAAGAAGTATTACTGTGTGACAAAGGGAGTTCCTTATCC 968 Query 1028 AGCTCTACCAAAGCGTGATAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTAT 1087 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 969 AGCTCTACCAAAGCGTGATAAGCCGAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTAT 1028 Query 1088 CAGAGCGGTTGAATCCCGAAAAGGAGATGGACAGCAAACGGCTTGTGAAGTTTCCCTT-G 1146 |||||| ||||||||||||||||||||||| | | ||| ||||||||||| | |||| | Sbjct 1029 CAGAGCAGTTGAATCCCGAAAAGGAGATGG--A-CTAACAGCTTGTGAAGTAT-CCTTAG 1084 Query 1147 TCCACTACGAAGACATGGGCATCCCAAAAGACGTAGCAAAGTTAGGTGTCCGTCATGGCA 1206 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1085 TCCACTACGAAGACATGGGAATCCCAAAAGATGTAGCAAAGTTAGGTGTCCGTCATGGCA 1144 Query 1207 TGTGGGGAGCTGTCAAGAAGCTAAACTCTGGTTTACGAGCGTACCAATCCGCCAGAAAAT 1266 ||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct 1145 TGTGGGGAGCTGTAAAGAAGCTAAACTCCGGTTTACGAGCATACCAATCTGCCAGAAAAT 1204 Query 1267 CAGACTCATCTCTATCTCGGATCGCCCAAATGGCAAGAATCACTACAAAACTGAACATGG 1326 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1205 CAGACTCATCTCTATCCCGGATCGCCCAAATGGCAAGAATCACTACAAAACTGAACATGG 1264 Query 1327 ATTCTGCAGAATCATCTTCAAGAGATGAAGACAGAAGCAGAGCAATGGAATATGC--G-A 1383 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | Sbjct 1265 ATTCTGCAGAATCATCTTCAAGAGATGAAGACAGAAGCAGAGCAATGGACTATGCAAGGA 1324 Query 1384 GACAACGGGACCATTTGAGAATGGACTGGAAATGGGTTGTTGTAGGAGGTGTCGCATTGG 1443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1325 GACAACGGGACCATTTGAGAATGGACTGGAAATGGGTTGTTGTAGGAGGTGTCGCATTGG 1384 Query 1444 CTTGTGGCCTTCACTCTGGGATCATTGGCAAGGCTTTACTGGCTGGAGCTGGCCAGAGAC 1503 ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1385 CTTGTGGTCTTCACACTGGGATCATTGGTAAGGCTTTACTGGCTGGAGCTGGCCAGAGAC 1444 Query 1504 TGGCTCGTAGGTGAGAAACCTTGTCGTATTCTTATTATATCTTCCCTTGACAGAAAAGA- 1562 |||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1445 TGGCGCGTAGGTGAAAAACCTTGTCATATTCTTATTATATCTTCCCTTGACAGAAAAGAA 1504 Query 1563 GAAACATATGCATATAATTAAGGGAAATGTATTATTTTTGCAACTCCTCTGAGAAGGGCA 1622 ||| ||||| ||||||| |||||||||||||| || ||||||||||| |||||| |||| Sbjct 1505 GAA-CATATACATATAACAAAGGGAAATGTATTCTTCTTGCAACTCCTATGAGAAAGGCA 1563 Query 1623 TGTGGTTTTGGTGGTGAACCATGTAGAGTAGTAGCTTTAAACTATGGAGTCAT--AAGTT 1680 |||||||||| |||||||||||||||||||||| |||||||||||||||| | ||||| Sbjct 1564 TGTGGTTTTGACGGTGAACCATGTAGAGTAGTAGTTTTAAACTATGGAGTCTTTTAAGTT 1623 Query 1681 ATTTGAGTTCTATCTTGT-ACCACAGGATAGTGAGATATGTATTTTATAAACTATATGAA 1739 |||||||||||||| || || |||||||||||||||||||||||||||||||||||||| Sbjct 1624 CTTTGAGTTCTATCTCGTTAC-ACAGGATAGTGAGATATGTATTTTATAAACTATATGAA 1682 Query 1740 TCTACATAGCTTCTAAAAGCTTAAATTCT 1768 ||||||||||||||||||||||||| ||| Sbjct 1683 TCTACATAGCTTCTAAAAGCTTAAAATCT 1711 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66353206790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5