BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14550.1 Length=1482 Score E Sequences producing significant alignments: (Bits) Value Ahg493451 jgi|Araly1|493451|fgenesh2_kg.7__2884__AT4G14550.1 1906 0.0 Ahg319024 jgi|Araly1|319024|fgenesh1_pm.C_scaffold_3002040 641 0.0 > Ahg493451 jgi|Araly1|493451|fgenesh2_kg.7__2884__AT4G14550.1 Length=1458 Score = 1906 bits (1032), Expect = 0.0 Identities = 1347/1488 (91%), Gaps = 66/1488 (4%) Strand=Plus/Plus Query 30 CAAGAGTTATCgagagagagagaAAACATATTCTGATTTAAGACATATATAGAC--AGCA 87 |||||||||||||||||||||||||||||||| |||||||| | | |||||||| |||| Sbjct 2 CAAGAGTTATCGAGAGAGAGAGAAAACATATTTTGATTTAACAAAAATATAGACAAAGCA 61 Query 88 AGAAGAGATATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCCGGAGGCACTGAA 147 ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 62 AGAAGAG--ATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCTGGAGGTGGTGAA 119 Query 148 ACCGTTGAAAGTCCGGCCAAGTCGGGTGTTGGGAACAAGAGAGGCTTCTCCGAGACCGTT 207 ||||||||||||||| |||||||||| || || ||||||||||||||||| ||||| ||| Sbjct 120 ACCGTTGAAAGTCCGTCCAAGTCGGGCGTAGGTAACAAGAGAGGCTTCTCTGAGACTGTT 179 Query 208 GATCTCAAACTTAATCTTCAATCTAACAAACAAGGACATGTGGATCTCAACACTAATGGA 267 | ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 180 GGTCTCAAACTCAATCTTCAATCTAACAAACAAGGACCTGTGGATCTCAACGTTAATGGA 239 Query 268 GCTCCCAAGGAGAAGACCTTCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTG 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GCTCCCAAGGAGAAGACCTTCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTG 299 Query 328 GTGGGTTGGCCACCGGTGAGGAACTACCGGAAAAATGTTATGGCTAATCAGAAGAGCGGC 387 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 300 GTGGGTTGGCCACCGGTGAGGAACTACCGAAAAAATGTTATGGCTAATCAGAAGAGCGGC 359 Query 388 GAAGCAGAGGAGGCAATGAGTAGTGGTGGAGGAACCGTCGCCTTTGTGAAGGTTTCCATG 447 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GAAGCGGAGGAGGCAATGAGTAGTGGTGGAGGAACCGTCGCCTTTGTGAAGGTTTCCATG 419 Query 448 GATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAAGATGTACACCAGCTACAAGGATCTC 507 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 420 GATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAAGATGTACAACAGCTACAAGAATCTC 479 Query 508 TCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACCATGGGGAGTTATGGAGCACAAGGG 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACCATGGGGAGTTATGGAGCACAAGGG 539 Query 568 ATGATAGATTTCATGAACGAGAGTAAAGTGATGGATCTGTTGAACAGTTCTGAGTATGTT 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 ATGATAGATTTCATGAACGAGAGTAAAGTGATGGATCTGTTGAACAGTTCTGAGTATGTT 599 Query 628 CCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCCTGGCCGATG 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCCTGGCCGATG 659 Query 688 TTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAGGATCCGAAGCAATTGGACTTGCT 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAGGATCCGAAGCAATTGGACTTGCT 719 Query 748 CCAAGAGCAATGGAGAAGTTCAAGAACAGATCATGAACaaaaaaaaaaGAGGACAATATG 807 |||||||| |||||||||||||||||||||||||||||||| |||||||| | | Sbjct 720 CCAAGAGCGATGGAGAAGTTCAAGAACAGATCATGAACAAACAAAAAAGA------T-T- 771 Query 808 CATTGAttttttttttttGGTATTGTTATGATCATGTGT-TTT-TAATTTAAAATATTGG 865 | | |||||||| ||||||||||||||||| ||| ||| |||||| |||||||| Sbjct 772 --T-G-TTTTTTTT----GGTATTGTTATGATCATATGTGTTTGTAATTTTTAATATTGG 823 Query 866 AAGTATATAGGAAAATATAATTGTTTACGaaaa-aaaTAACTTTAAATATGTCttttttt 924 ||||||||||||||||| |||||| |||||||| |||| |||| |||||||||| | ||| Sbjct 824 AAGTATATAGGAAAATAGAATTGTCTACGAAAACAAATCACTTGAAATATGTCTGTGTTT 883 Query 925 ttttttttGAAATTAGTCTGTGTTTTTGTTTTCATCTCTTAATTAGTAGAAATCATTTTT 984 || || ||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 884 TTGTT---GAAATTAGTCTGTGTTTTTGTTTTCATCTCTTAATTAGTCGAAATCAATTTT 940 Query 985 TAATATGTAATTGTGATAGTAAATCTATAGAGTTCGTATTTTTGCTATTTAAAATT-TAA 1043 ||||||||||| |||||||||| |||||||||||| | |||||||||||| |||| ||| Sbjct 941 TAATATGTAATAGTGATAGTAATTCTATAGAGTTCTT-TTTTTGCTATTTGAAATGCTAA 999 Query 1044 AATGCTAATACTATATATAATTTATGATAGGTAAATTTACGTTAAA-TAatttatctcca 1102 | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1000 A-TGCTAACACTATATATAATTTATGATAGGTAAATTTACGTTAAAGTAATTTATCTCCA 1058 Query 1103 cttttc---------ctactttattattcttttcctctttattttctcatttattggctt 1153 |||||| ||||||||| || ||||| || |||||||||| | |||| ||| Sbjct 1059 CTTTTCTAATGATAACTACTTTATGGTTTTTTTCGTCGTTATTTTCTCGTATATTTTCTT 1118 Query 1154 tacagatta-tat-t-tG-A----AA-TTTGTAACTAT-TTTTGATGTATCTAAAAACAT 1203 ||||||||| ||| | | | || ||||||||||| |||| |||||||||||||||| Sbjct 1119 TACAGATTAATATCTATATATTTTAAATTTGTAACTATGTTTT-ATGTATCTAAAAACAT 1177 Query 1204 TTCACATAACAATTTCTTAAGAAAACTAAGAAA-ACTGTTGGTATATTTTTTGAC--TAA 1260 ||||||||||||||||||||||||| ||||||| | ||||||||||||||| || ||| Sbjct 1178 TTCACATAACAATTTCTTAAGAAAAATAAGAAATA-TGTTGGTATATTTTT-GAAAGTAA 1235 Query 1261 -AATGGTTTCCAAA-AAGATTTTGAAACGAACTAAAATCTTCATTA-CAAAACCAATTTT 1317 || | || ||| || |||| |||| |||||||||||||| | |||||||| || | Sbjct 1236 CAA-G-TTACCATTCAATATTT-GAAAAAAACTAAAATCTTCAAAAACAAAACCA-TTAT 1291 Query 1318 AAAAC-TACAAAACAAATATTCATGGTTTTAAGTTT-CTTTTTTCTTTCCTAGTTACGTG 1375 ||||| |||||||| ||| ||||||||||||||||| ||||||||||||||| ||| ||| Sbjct 1292 AAAACCTACAAAACCAATTTTCATGGTTTTAAGTTTTCTTTTTTCTTTCCTAATTATGTG 1351 Query 1376 GGAATACGTTATTAAATTCAGGACCCATGAGAGGCGTAGGGAACAAGAGCATGTGCATAT 1435 ||| || | |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1352 GGATTAAATCATTAAATTCAGGACCCATGAGAGGCGTAGGGAACAAGAGCATGTGCATGT 1411 Query 1436 TCATGGGTCTTTCAAATTCAGTCCATCCTC-TTCATGCTAATGTGCCC 1482 |||||||||||||||||||||||||||| | || |||||||||| ||| Sbjct 1412 TCATGGGTCTTTCAAATTCAGTCCATCCCCATT-ATGCTAATGTACCC 1458 > Ahg319024 jgi|Araly1|319024|fgenesh1_pm.C_scaffold_3002040 Length=729 Score = 641 bits (347), Expect = 0.0 Identities = 604/722 (84%), Gaps = 41/722 (6%) Strand=Plus/Plus Query 96 TATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCCGGAGGCACTGAAACCGTTGA 155 ||||||||| |||| ||||||||| |||||||| |||||||| ||| ||||| ||||||| Sbjct 15 TATGAACCTCAAGGCGACGGAGCTCTGTCTTGGTCTCCCCGGCGGCGCTGAAGCCGTTGA 74 Query 156 AAGTCCGGCCAAGTCGGGTGTTGGGAA-CAAGAGAGGCTTCTCCGAGACCGTTGATCTCA 214 || || ||||| || || | |||||| |||||||||||||||||||||||||||||| | Sbjct 75 GAGCCCTGCCAAATC-GGCGGTGGGAAGCAAGAGAGGCTTCTCCGAGACCGTTGATCTTA 133 Query 215 AACTTAATCTTCAATCTAACAAACAAGGACAT--GTGGATCTCAAC-AC-T-AATGGAGC 269 || |||||||||||||||||| |||| | | || ||||||||| || | || ||| Sbjct 134 TGCTCAATCTTCAATCTAACAAAGAAGG-C-TCCGTCGATCTCAACAACGTCGCTGCAGC 191 Query 270 TCCCAAGGAGAAGACCT-TCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTGG 328 ||| |||||||||| || ||| ||||| ||||||||||||||||||||||||||||||| Sbjct 192 TCCTAAGGAGAAGA-CTACCCTCAAAGATCCTTCTAAGCCTCCTGCTAAAGCACAAGTGG 250 Query 329 TGGGTTGGCCACCGGTGAGGAACTACCGGAA-AA-ATGTTATGGCTAATCAGAAG---AG 383 |||| |||||||| |||||||||||| |||| || ||| ||| || | |||||| || Sbjct 251 TGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATG--ATGACTCAGCAGAAGACCAG 308 Query 384 CGGC---G-A-A-G-CAG-A--G-G-AGGCAATGAGTAGTGGTGGAGGAACCGTC---G- 427 ||| | | | | ||| | | | |||| ||| | ||||||||| | ||| | Sbjct 309 TGGCGAGGAAGAGGCCAGCAGCGAGAAGGCCGGGAGCGGCGGTGGAGGAGCGGTCGGAGC 368 Query 428 C--CTTTGTGAAGGTTTCCATGGATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAAGAT 485 | ||| |||||||| |||||||| || ||||| ||||| |||| |||||||||||||| Sbjct 369 CGGCTTGGTGAAGGTGTCCATGGACGGTGCTCCCTATCTGAGGAAAGTTGACCTCAAGAT 428 Query 486 GTACACCAGCTACAAGGATCTCTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACCAT 545 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 429 GTACAAAAGCTACCAGGATCTCTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACTAT 488 Query 546 GGGGAGTTATGGAGCACAAGGGATGATAGATTTCATGAACGAGAGTAAAG-TGATGGATC 604 ||| | |||||||||||||| ||||||||||||||||||||||| || | | ||| ||| Sbjct 489 GGGAAACTATGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAA-GCTTATGAATC 547 Query 605 TGTTGAACAGTTCTGAGTATGTTCCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCG 664 | |||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 548 TCCTGAATAGTTCTGAGTATGTCCCAAGCTACGAGGACAAAGATGGTGATTGGATGCTCG 607 Query 665 TTGGTGATGTCCCCTGGCCGATGTTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAG 724 | || |||||||| ||| |||||||||||||| ||||||||||||||||| ||||| | Sbjct 608 TCGGCGATGTCCCATGGGAAATGTTTGTCGAGTCCTGCAAACGTTTGCGCATTATGAAGG 667 Query 725 GATCCGAAGCAATTGGACTTGCTCCAAGAGCAATGGAGAAGT--T-CAAGAACAGATCAT 781 |||| |||||||||||||||||||| |||||||||||||||| | |||||||||||| | Sbjct 668 GATCTGAAGCAATTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAGAACAGATCTT 727 Query 782 GA 783 || Sbjct 728 GA 729 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55459396720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5