BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14560.1 Length=837 Score E Sequences producing significant alignments: (Bits) Value Ahg946923 jgi|Araly1|946923|scaffold_703152.1 893 0.0 Ahg930309 jgi|Araly1|930309|scaffold_302766.1 425 2e-118 Ahg936765 jgi|Araly1|936765|scaffold_500956.1 158 8e-38 Ahg952206 jgi|Araly1|952206|scaffold_45700004.1 143 2e-33 Ahg351649 jgi|Araly1|351649|fgenesh1_pg.C_scaffold_6002242 143 2e-33 > Ahg946923 jgi|Araly1|946923|scaffold_703152.1 Length=549 Score = 893 bits (483), Expect = 0.0 Identities = 528/550 (96%), Gaps = 1/550 (0%) Strand=Plus/Plus Query 105 TTAAAGTATAGTGAGAGAATATGGAAGTCACCAATGGGCTTAACCTTAAGGACACAGAGC 164 ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| Sbjct 1 TTAAAGTATAGTGAGAGAAAATGGAAGTCATCAATGGGCTTAACCTTAAGGACACCGAGC 60 Query 165 TTCGTTTGGGATTACCCGGAGCACAAGAAGAACAACAACTAGAACTTTCTTGCGTCAGAA 224 |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| Sbjct 61 TTCGTTTGGGATTACCTGGAGCACAAGAAGAACAACAACAAGAAGTTTCTTGCGTCAGAA 120 Query 225 GCAACAACAAGCGCAAGAACAACGACTCAACAGAAGAATCTGCTCCTCCTCCTGCAAAAA 284 ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 121 GCAACAACAAGCGAAAGAACAACGACTCAAAAGAAGAATCTGCTCCTCCTCCTGCCAAAA 180 Query 285 CACAAATCGTTGGATGGCCTCCAGTGAGATCTAACCGTAAGAACAACAACAACAAAAACG 344 |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 181 CACAAATCGTGGGATGGCCTCCATTGAGATCTAACCGTAAGAACAACAACAACAAAAACG 240 Query 345 TGAGTTATGTGAAAGTGAGTATGGACGGAGCTCCATATCTCCGTAAGATAGATCTCAAGA 404 | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 241 TTAGTTATGTGAAAGTGAGTATGGACGGAGCACCATATCTCCGTAAAATAGATCTCAAGA 300 Query 405 TGTACAAAAACTATCCAGAGCTTCTCAAAGCACTAGAGAACATGTTCAAGTTCACAGTAG 464 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 301 TGTACAAAAACTATCCAGAGCTTCTCAAAGCACTCGAGAACATGTTCAAGTTCACAGTAG 360 Query 465 GTGAATATTCCGAGAGAGAAGGCTACAAAGGATCTGGATTTGTACCTACTTATGAAGACA 524 |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 361 GTGAATATTCGGAAAGAGAAGGCTACAAAGGATCAGGATTTGTACCTACTTATGAAGACA 420 Query 525 AAGATGGAGATTGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTC 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAGATGGAGATTGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTC 480 Query 585 AAAAACTCAGAATCATGAAAGGATCCGAAGCTCCTACTGCCTTATGATCCATTGTCTCAA 644 ||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| Sbjct 481 AAAAACTCAGAATCATGAAAGGATCTGAAGTTCCTCCTGCCTTATGATCCATTGTCTCAA 540 Query 645 AACACCTTTT 654 | |||||||| Sbjct 541 A-CACCTTTT 549 > Ahg930309 jgi|Araly1|930309|scaffold_302766.1 Length=565 Score = 425 bits (230), Expect = 2e-118 Identities = 414/497 (83%), Gaps = 35/497 (7%) Strand=Plus/Plus Query 142 GCTTAACCTTAAGGACACAGAGCT-TCGT-TTGGGATTACCCGG-AG--CACAAG-AA-- 193 |||||||||||||||||||||||| | || || |||||||| || || |||| | || Sbjct 44 GCTTAACCTTAAGGACACAGAGCTAT-GTCTT-GGATTACCAGGAAGAACACAGGAAATC 101 Query 194 GAACAACAACTAGAACTTTCTTGCGTCAGAAGCAACAACAAGCG-CAA---GAA-CAACG 248 || || ||| ||| |||||||||| | ||||||||||||||| ||| ||| ||| Sbjct 102 AAAGAAGAACAAGAGGTTTCTTGCGTTAAAAGCAACAACAAGCGTCAATTTGAAGAAAC- 160 Query 249 AC-TCA--ACAGAAGAATCTGCTCCTCCTCCTGCAAAAACACAAATCGTTGGATGGCCTC 305 | | | | |||||||||| | |||||| | | ||||| ||||||||||||||||| | Sbjct 161 TCGTGAGGA-AGAAGAATCTACACCTCCTAC--C-AAAACTCAAATCGTTGGATGGCCAC 216 Query 306 CAGTGAGATCTAACCGTAAGAACAACAACAACAAAAACGTGAGTTATGTGAAAGTGAGTA 365 | ||||||||| ||||||| ||||||||| | ||||| || ||||||||||||| Sbjct 217 CGGTGAGATCTTCCCGTAAG---AACAACAAC---AGTGTGAGCTACGTGAAAGTGAGTA 270 Query 366 TGGACGGAGCTCCATATCTCCGTAAGATAGATCTCAAGATGTACAAAAACTATCCAGAGC 425 ||||||||||||| || ||||| ||||| |||||||||| ||||||||||| || |||| Sbjct 271 TGGACGGAGCTCCTTACCTCCGCAAGATCGATCTCAAGACATACAAAAACTACCCCGAGC 330 Query 426 TTCTCAAAGCACTAGAGAACATGTTC-AAGTTCACAG-TAGGTGAATATTCCGAGAGAGA 483 ||||||| || |||||||||||||| ||| |||| | | |||||||||| |||||||| Sbjct 331 TTCTCAAGGCGTTAGAGAACATGTTCAAAG-TCAC-GATTGGTGAATATTGTGAGAGAGA 388 Query 484 AGGCTACAAAGGATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTT 543 ||| ||||||||||||||||||||||| || || ||||| |||||||||||||||||||| Sbjct 389 AGGATACAAAGGATCTGGATTTGTACCAACATACGAAGATAAAGATGGAGATTGGATGTT 448 Query 544 GGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGA 602 ||| ||||||||||||||||||||||||||||| |||||| || | |||||||||||||| Sbjct 449 GGTTGGTGATGTTCCATGGGACATGTTCTCTTCTTCTTGT-AAGAGACTCAGAATCATGA 507 Query 603 AAGGATCCGAAGCTCCT 619 |||||||||| |||||| Sbjct 508 AAGGATCCGATGCTCCT 524 > Ahg936765 jgi|Araly1|936765|scaffold_500956.1 Length=197 Score = 158 bits (85), Expect = 8e-38 Identities = 113/126 (90%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 495 GATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTGGTCGGTGATG 554 ||| |||||||||||| || || || || |||||| |||||||||||||||| ||||||| Sbjct 33 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATCGAGATTGGATGTTGGTTGGTGATG 91 Query 555 TTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGAAAGGATCCGAA 613 |||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||| Sbjct 92 TTCCATGGGACATGTTCTCTTCTTCGTGT-AAAAGACTCAGAATCATGAAAGGATCCGAT 150 Query 614 GCTCCT 619 |||||| Sbjct 151 GCTCCT 156 > Ahg952206 jgi|Araly1|952206|scaffold_45700004.1 Length=206 Score = 143 bits (77), Expect = 2e-33 Identities = 103/115 (90%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 495 GATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTGGTCGGTGATG 554 ||| |||||||||||| || || || || ||||||||||||||||||||||| ||||||| Sbjct 33 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATGGAGATTGGATGTTGGTTGGTGATG 91 Query 555 TTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGAAAGGAT 608 |||||||||||||||||||||| || ||| |||| |||| ||||||||||||||| Sbjct 92 TTCCATGGGACATGTTCTCTTCTTCCTGT-AAAAGACTCGGAATCATGAAAGGAT 145 > Ahg351649 jgi|Araly1|351649|fgenesh1_pg.C_scaffold_6002242 Length=633 Score = 143 bits (77), Expect = 2e-33 Identities = 103/115 (90%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 495 GATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTGGTCGGTGATG 554 ||| |||||||||||| || || || || ||||||||||||||||||||||| ||||||| Sbjct 480 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATGGAGATTGGATGTTGGTTGGTGATG 538 Query 555 TTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGAAAGGAT 608 |||||||||||||||||||||| || ||| |||| |||| ||||||||||||||| Sbjct 539 TTCCATGGGACATGTTCTCTTCTTCCTGT-AAAAGACTCGGAATCATGAAAGGAT 592 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30955808604 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5