BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14580.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946921 jgi|Araly1|946921|scaffold_703150.1 1953 0.0
Ahg479810 jgi|Araly1|479810|fgenesh2_kg.3__2511__AT3G23000.1 634 0.0
> Ahg946921 jgi|Araly1|946921|scaffold_703150.1
Length=1319
Score = 1953 bits (1057), Expect = 0.0
Identities = 1210/1283 (94%), Gaps = 13/1283 (1%)
Strand=Plus/Plus
Query 1 ATGGAATCTCCATATCCAAAATCACCGGAAAAAATCACAGGGACAGTTCTTCTCGGAAAA 60
|||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||
Sbjct 28 ATGGAATCTCCAAATCCAAAATCACCGGAAAACCCCTCAGGGACAGTTCTTCTCGGTAAA 87
Query 61 TACGAACTCGGTCGTCGACTAGGAAGCGGAAGCTTCGCTAAAGTCCATGTAGCTCGTTCC 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 88 TACGAACTCGGTCGTCGACTAGGAAGCGGAAGCTTCGCCAAAGTCCATGTAGCTCGTTCA 147
Query 121 ATCTCCACCGGCGAACTCGTAGCTATCAAAATCATCGACAAGCAA-AAAACCATAGATTC 179
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 148 ATCTCCACCGGCGAACTCGTAGCTATCAAAATCATCGATAAG-AAGAAAACCATAGATTC 206
Query 180 CGGTATGGAGCCGAGAATAATCCGAGAGATCGAAGCGATGCGCCGCCTCCACAACCACCC 239
|||||||||||||||||| ||||||||||||||||||||||| || |||||| |||||||
Sbjct 207 CGGTATGGAGCCGAGAATCATCCGAGAGATCGAAGCGATGCGTCGTCTCCACCACCACCC 266
Query 240 AAACGTCCTCAAAATCCACGAAGTCATGGCCACTAAATCCAAGATCTACCTCGTCGTCGA 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 267 AAACGTCCTCAAAATCCACGAAGTTATGGCCACTAAATCCAAGATCTACCTCGTCGTCGA 326
Query 300 ATACGCCGCCGGAGGAGAACTCTTCACCAAACTCATCCGATTCGGCCGCCTTAACGAATC 359
|||||||||||||||||| || ||| ||||||||| ||||||||||||||||||||||||
Sbjct 327 ATACGCCGCCGGAGGAGAGCTTTTCTCCAAACTCAACCGATTCGGCCGCCTTAACGAATC 386
Query 360 GGCGGCGCGTCGTTATTTCCAACAACTCGCCTCCGCGCTCAGTTTCTGCCACCGCGACGG 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 387 GGCGGCGCGTCGTTATTTCCAACAACTCGCCTCCGCTCTCAGTTTCTGCCACCGCGACGG 446
Query 420 AATCGCTCATCGCGACGTGAAGCCACAGAATCTCCTCCTTGATAAGCAAGGAAACCTCAA 479
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 447 AATCGCTCATCGTGACGTTAAGCCACAAAATCTCCTCCTTGATAAGCAAGGAAACCTCAA 506
Query 480 GGTCTCCGACTTTGGTCTATCGGCTTTACCGGAGCATCG-AAGTAATAACGGATTGCTTC 538
|||||||||||||||| |||| ||||||||||||||||| || || | ||||||||||||
Sbjct 507 GGTCTCCGACTTTGGTTTATCTGCTTTACCGGAGCATCGTAA-TAGTGACGGATTGCTTC 565
Query 539 ACACGGCATGTGGCACACCGGCTTATACAGCACCGGAAGTAATTGCTCAGAGAGGTTACG 598
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 566 ACACGGCTTGTGGCACGCCGGCTTATACAGCGCCGGAAGTAATTGCTCAGAGAGGTTACG 625
Query 599 ACGGTGCTAAAGCTGATGCGTGGTCGTGTGGTGTGTTTCTCTTTGTTCTTCTTGCTGGTT 658
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 626 ACGGTGCTAAAGCTGATGCTTGGTCGTGTGGTGTGTTTCTCTTTGTTCTTCTTTCTGGTT 685
Query 659 ACGTTCCTTTCGATGATGCCAACATTGTTGCTATGTATAGGAAGATTCATAAAAGAGATT 718
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 686 ACGTTCCTTTCGATGATTCCAACATTGTTTCTATGTATAGGAAGATTCACAAAAGAGATT 745
Query 719 ACCGGTTTCCGAGCTGGATCTCGAAACCGGCTCGATCTATTATATATAAGTTGCTTGATC 778
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 746 ACCGGTTTCCGAGCTGGATCTCGAAACCGGCACGATCTATTATCTATAAGTTGCTTGATC 805
Query 779 CGAATCCGGAGACGAGGATGAGTATAGAAGCTGTGATGGGAACGGTTTGGTTTCAAAAAT 838
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 806 CGAATCCGGAGACGAGGATGAGTATAGAAGCTGTGATTGGAACGGCATGGTTTCAAAAAT 865
Query 839 CTCTAGAGATTTCGGAGTTTCAGTCTAGTGTGTTTGAGTTGGATCGGTTTCTTGAGAAAG 898
|| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 866 CTTTAGAGATTTCGGAATTTCAGACTAGTGTGTTTGACTTGGATCGGTTTCTTGAGAAAG 925
Query 899 AAGCGAAGTCGAGCAATGCGATTACTGCGTTTGATTTGATCTCGTTGTCATCGGGATTGG 958
||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 926 AAGCGAAGTCGAGTAATCCGATTACGGCGTTTGATTTGATCTCGTTGTCATCGGGATTGG 985
Query 959 ATCTTTCGGGGTTGTTTGAGAGGAGGAAGAGGAAAGAGAAGAGGTTTACGGCGAGAGTGT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 ATCTTTCGGGGTTGTTTGAGAGGAGGAAGAGGAAAGAGAAGAGGTTTACGGCGAGAGTGT 1045
Query 1019 CGGCGGAAAGAGTGGTGGAGAAGGCGGGGATGATAGGGGAAAAGTTAGGGTTTAGAGTGG 1078
||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1046 CGGCGGAAAGAGTGGTGGAGAAGGCAGAGACGATAGGGGAAAAGTTAGGGTTTAGAGTGC 1105
Query 1079 AGAAGAAGGAAGAGACTAAGGTGGTGGGATTGGGAAAAGGAAGAACTGCGGTGGTGGTTG 1138
|||||||||||||| | | ||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1106 AGAAGAAGGAAGAGGCGAGGGTGGTGGGATTGGGAAAAGGAAGAACCGCGGTGGTTGTTG 1165
Query 1139 AGGTGGTGGAGTTTGCGGAAGGGTTGGTTGTGGCGGATGTGAAGGTTGTGGTGGAAGGTG 1198
||||||||||| | ||||||||||||||||||||||| |||||||| | | ||| ||||
Sbjct 1166 AGGTGGTGGAGCTGGCGGAAGGGTTGGTTGTGGCGGAGGTGAAGGT-G-GC-GGAGGGTG 1222
Query 1199 AAGAGGAGGAGGAGGAGGTGGAGTCTCATTGGTCGGAGCTAATTGTAGAGCTTGAGGAGA 1258
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1223 AAGAGGAGGAGGAGGAG----A--CTCATTGGTCGGAGCTAATTGTAGAGCTTGAGGAGA 1276
Query 1259 TTGTGCTCTCATGGCACAATTGA 1281
|||||||||||||||||||||||
Sbjct 1277 TTGTGCTCTCATGGCACAATTGA 1299
> Ahg479810 jgi|Araly1|479810|fgenesh2_kg.3__2511__AT3G23000.1
Length=1342
Score = 634 bits (343), Expect = 0.0
Identities = 924/1194 (77%), Gaps = 81/1194 (7%)
Strand=Plus/Plus
Query 48 TCTTCTCGGAAAATACGAACTCGGTCGTCGACTAGGAAGCGGAAGCTTCGCTAAAGTCCA 107
||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||
Sbjct 101 TCTCCTCGGAAAATACGAACTCGGTCGTCGACTCGGTAGCGGAAGCTTCGCGAAAGTTCA 160
Query 108 TGTAGCTCGTTCCATCTCCA-CCGGCGAACTCGTAGCTATCAAAATCATCGACAAGCAA- 165
| ||||||| || ||| | ||| ||| ||||| || || ||||||||||| ||| ||
Sbjct 161 TCTAGCTCGATCAATCGA-ATCCGACGAGCTCGTCGCCATTAAAATCATCGAGAAG-AAG 218
Query 166 AAAACCATAGATTCCGGTATGGAGCCGAGAATAATCCGAGAGATCGAAGCGATGCGCCGC 225
||||| || || || || ||||| || ||||||||| |||||||||| |||||||| ||
Sbjct 219 AAAACAATCGAATCAGGCATGGAACCAAGAATAATCAGAGAGATCGATGCGATGCGTCGT 278
Query 226 CTCCA-CAACCACCCAAACGTCCTCAAAATCCACGAAGTCATGGCCACTAAATCCAAGAT 284
|| | || | | |||||| | || || ||||| ||||| ||||| || ||||| |||||
Sbjct 279 CTTCGTCATC-ATCCAAACATACTTAAGATCCATGAAGTTATGGCAACCAAATCTAAGAT 337
Query 285 CTACCTCGTCGTCGAA-TACGCCGCCGGAGGAGAACTCTTCACCAAACTCATCCGATTCG 343
||| ||||| | ||| | ||| |||| || ||||| ||| | ||| || |||| | ||
Sbjct 338 CTATCTCGTAATGGAACT-CGCTTCCGGTGGTGAACTTTTCTCTAAAGTCCTCCG-T-CG 394
Query 344 -GC-CGCCTTAAC-GAATCGGCGGCGCGTCGTTA-TTTCCAACAACTCGCCTCCGCGCTC 399
| || ||| | ||||| ||||||||||||| |||| ||||||| |||||||||||
Sbjct 395 TGGTCGTCTTC-CTGAATCAACGGCGCGTCGTTACTTTC-AACAACTAGCCTCCGCGCTT 452
Query 400 AGTTTCTGC-CACCGCGACGGAATCGCTCATCGCGACGTGAAGCCACAGAATCTCCTCCT 458
|| |||| | |||| ||||| ||||||| || || ||||| ||||||||||| ||| |
Sbjct 453 AGATTCT-CTCACCAAGACGGTGTCGCTCACCGTGATGTGAAACCACAGAATCTACTC-T 510
Query 459 T-GATAAGCAAGGAAACCTCAAGGTCTCCGACTTTGGTCTATCGGCTTTACCGGAGCATC 517
| ||| ||||||| |||||||||||||| ||||||||| |||| ||||||||||| ||||
Sbjct 511 TAGATCAGCAAGGTAACCTCAAGGTCTCTGACTTTGGTTTATCAGCTTTACCGGAACATC 570
Query 518 GAAGTAATAACGGATTGCTTCACACGGCATGTGGCACACCGGCTTATACAGCACCGGAAG 577
|| |||||||||||||||||||| ||||| || |||||||| ||||| ||||| |
Sbjct 571 TCC--AA-AACGGATTGCTTCACACGGCGTGTGGTACTCCGGCTTACACAGCTCCGGAGG 627
Query 578 TAATTGCTCAGAGAGGTTACGACGGTGCTAAAGCTGATGCGTGGTCGTGTGGTGTG-TTT 636
| ||| | | | |||| |||||||| || ||||||||||||||||| ||||||||| |||
Sbjct 628 TTATTTCGCGGCGAGGATACGACGGAGCGAAAGCTGATGCGTGGTCTTGTGGTGTGATTT 687
Query 637 CTCTTTGTTCTTCTTGCT-GGTTACGTTCC-TTTCGATGATGCCAACATTGTTGCTATGT 694
| ||||||||| ||| | || ||||||| ||| |||||| | || || | || ||||
Sbjct 688 -TGTTTGTTCTT-TTGGTTGGCGACGTTCCATTT-GATGATTCGAATATCGCAGCGATGT 744
Query 695 ATAGGAAGATTCATAAAAGAGATTACCGGTTTCCGAGCTGGATCTCGAAACCGGCTCGAT 754
|| ||||||||||| |||||||| || |||||||||||||| ||||||| || ||
Sbjct 745 ATCGGAAGATTCATCGGAGAGATTATCGATTTCCGAGCTGGATTTCGAAACAAGCGAAAT 804
Query 755 CTATTATATATAAGTTGCTT-GATCCGAATCCGG-AGACGAGGATGAGTATAGAAGCTGT 812
| || || ||| || || || ||||||||||| | | |||||||||||||| ||| | ||
Sbjct 805 CGATAATCTATCAGATG-TTAGATCCGAATCCAGTA-ACGAGGATGAGTATTGAAACAGT 862
Query 813 GATGG-GAACGGTTTGGTTTCAA-AAATCTCTAGAGATTTCGGAGTTTCAGTC-TAGTGT 869
||| || || |||||| ||| ||||||||||| | ||| |||||||| || || |
Sbjct 863 TATGAAGA-CGAATTGGTT-CAAGAAATCTCTAGAAACTTCTGAGTTTCA-TCGTAACAT 919
Query 870 GTTTGAGTT-GGATCGGTTTCTTGAGAAAGAAG-CGAAGTCGAGCAATGCGATTACTGCG 927
||||| || ||| | | |||| ||| ||| || | ||| ||||||||||
Sbjct 920 TTTTGA-TTCGGAACCG------GAGAT-GAAATCGA-GT-GTT-AATTCGATTACTGC- 967
Query 928 TTT-GATTTGATCTCGTTGTCATCGGGATTGGATCTTTCGGGGTTGTTTGAGAGG-AGGA 985
||| ||||||||||||||||| ||||| || |||||||| || ||||||||| | | ||
Sbjct 968 TTTCGATTTGATCTCGTTGTCGTCGGGGTTAGATCTTTCTGGATTGTTTGAG-GTTAAGA 1026
Query 986 AGAGGAAAGAGAAGAGGTTTACGGCGAGAG-TGTCGGCGGAAAGA-GTGGTGGAGAAGGC 1043
||| ||| |||| ||| || || |||| || | ||||| | || |||| |||||| ||
Sbjct 1027 AGAAGAAGGAGAGGAGATTCACCGCGA-AGGTTTCGGCTGTT-GAAGTGGAGGAGAAAGC 1084
Query 1044 GGGGATGATAGGGGAAAAGTTAGGGT-T-TAG--A-GT-G--GA-GAAGAAGGAAG-AGA 1093
| |||||| ||||| || ||||| | | ||| | | | || |||||| |||| |||
Sbjct 1085 GAAGATGATTGGGGAGAATTTAGGTTATGTAGTGAAGAAGAAGATGAAGAAAGAAGGAGA 1144
Query 1094 --CTAAGGTGGTGGGATT-GGGAAAAGGAAGAACTGCGGTGGTGGTTGAGGTGGTGGAGT 1150
| ||||| || ||||| |||| | |||||||||||| | ||||| || | ||| ||||
Sbjct 1145 AGCGAAGGTTGTTGGATTAGGGAGA-GGAAGAACTGCGATTGTGGTGGAAGCGGTTGAGT 1203
Query 1151 TTGCGGAAGG--GTTGGTTGTGGCGGATGTGAAGGTTGTGGTGGAAGGTGAAGA 1202
| ||| || |||| | |||| || ||||| ||||| || ||||||||||
Sbjct 1204 TAACGGT-GGATGTTG-TGGTGGTTGAAGTGAAAGTTGT--TG-AAGGTGAAGA 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5