BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14605.1 Length=1787 Score E Sequences producing significant alignments: (Bits) Value Ahg946917 jgi|Araly1|946917|scaffold_703146.1 2204 0.0 > Ahg946917 jgi|Araly1|946917|scaffold_703146.1 Length=1539 Score = 2204 bits (1193), Expect = 0.0 Identities = 1415/1521 (93%), Gaps = 19/1521 (1%) Strand=Plus/Plus Query 155 AATGCAAAGTCTTAGTCAACTTGGACCTTCAGAGATTTTCCTTGTCGCCAGAAGAGAAAA 214 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 21 AATGCAAAGTCTTAGTCAAATTGGACCTTCAGAGATTTTCCTTGTCGCCAGAAGAGAAAA 80 Query 215 ACCCAGTAC--G---AG--------A--GCACAGCTTTGGTTTACGGGAAGACTCTCTTT 259 ||||||||| | || | |||||||||||||| || |||||| | ||||| Sbjct 81 ACCCAGTACTAGCTTAGTTATTACCAGGGCACAGCTTTGGTTCACAGGAAGATTGTCTTT 140 Query 260 TAGACAAGAAACAAATGGGATTCGTTTAAAGAATAGAGTAGAGTTTAGTCCAAGACCTGT 319 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 141 TCGACAAGAAACAAATGGGATTCGTTTAAAGAATAGAGTAGAGTTTAGTCCGAGACCTGT 200 Query 320 ACCTCCAAATCTGATCGCAGCAGAGAAAGAAGAAGCTAAAGCTGTTTTAACTCTATTCTT 379 |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 201 ACCTCCTAATCTGATTGCTGCAGAGAAAGAAGAAGCTAAAGCTGTTTTAACTCTATTCTT 260 Query 380 CAAGAAGCAAGGTCTTAGCAACAGTCTCTCTTCTCGGTTAATCAACAAATCCGATCTATT 439 |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||| Sbjct 261 CAAGAAGCAAGGTCTTAGCAACAGTCTCTCTTCTCGCTTAATCAATAAATCTGATCAATT 320 Query 440 CATTGACCATTTAGTGTCCAGGCTCCATTCTGTTCATAAAGCTCGATACCTCGTAGGAAG 499 |||||| |||||||| || || || ||||||||||||||||| || || ||||||||||| Sbjct 321 CATTGATCATTTAGTCTCTAGACTTCATTCTGTTCATAAAGCACGGTATCTCGTAGGAAG 380 Query 500 AGAGCTTACTACACTTGAGATTCGAGATTCTCTCATTCCTTACCTCGAACAACTTCATGA 559 ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| Sbjct 381 AGAGCTTACTACACTTGAGATTCGAGATTCTCTTATTCCTTATCTCGAAGAACTTCATGA 440 Query 560 AGAACATGGTGATCTTCTCGCTGAGCTTGTTGTGAGCTTCCCTGATCCACCAGCTGA-AC 618 |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| | Sbjct 441 AGAACACGGTGATCTTCTCTCTGAGCTTGTTGTGAGCTACCCTGATCCACCAGCTGAGA- 499 Query 619 CTAGACTTGTTGCTTCATCTCCAGTTTCTG-TCCTACCACCTCGTGGTGACACAGATTCT 677 |||||||||||||||||||| |||| ||| | | ||| ||||||||||||||||||||| Sbjct 500 CTAGACTTGTTGCTTCATCTTTAGTTCCTGTTTC-ACCGCCTCGTGGTGACACAGATTCT 558 Query 678 GCTGCAGACACTCGTAAACTCAGAGCGGTGTCTCGAGTCAGCGAACTTGACACAGAAGGT 737 |||||||| ||||| ||||||||||| |||||||| || || ||||||||| |||||||| Sbjct 559 GCTGCAGAGACTCGGAAACTCAGAGCTGTGTCTCGGGTTAGTGAACTTGACCCAGAAGGT 618 Query 738 GCATTACGTCCTCAGACCCTTTACCTTCTTGACCTCGGTTTAAACCTCGAGCAGATCAAA 797 ||||||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||| Sbjct 619 GCATTACGTCCTCAGACTCTTTACCTTCTTGACCTTGGTTTAAACTTAGAGCAGATCAAA 678 Query 798 ACGATCACTCGAAAGTTCGCTGCCTTTCCTTATTACAGCCTCGATGGAAAAATAAAACCT 857 ||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||| Sbjct 679 ACGATCACTCGTAAGTTTGCTGCTTTTCCTTATTACAGCCTCGACGGAAAAATCAAACCC 738 Query 858 GTTGTGGAATTCCTTCTAGACCTCGGAATTCCTAAATCAGATATCCCCACAATCCTCTGC 917 ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 739 GTTGTTGAGTTCCTTCTAGACCTTGGAATTCCTAAATCAGATATCCCCACAATCCTCTGC 798 Query 918 AAACGCCCACAGATATGCGGAATCAGCCTAACCGATAACCTGAAACCGACAATGGCCTTT 977 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 AAACGTCCACAGATCTGCGGAATCAGCCTAACCGATAACCTGAAACCGACAATGGCCTTT 858 Query 978 CTTGAGACACTTGGCATTGACAAGAACCAATGGGCAAAGATCATTTCCCGTTTCCCAGCC 1037 |||||||||||||||||||| ||||| || |||||||||||||||| |||||||||||| Sbjct 859 CTTGAGACACTTGGCATTGATAAGAATCAGTGGGCAAAGATCATTTACCGTTTCCCAGCA 918 Query 1038 ATCCTCACTTACAGCCGCCAGAAACTTACTTCAACTGTCGAGTTCTTATCACAAACTGGT 1097 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 919 ATCCTCACTTACAGCCGCCAGAAACTTACTTCAACTGTCGAGTTCTTATCCCAAACCGGT 978 Query 1098 CTCACAGAAGAACAGATAGGGAGAATCCTAACCCGATGTCCAAACATCATGAGTTACAGT 1157 ||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||| Sbjct 979 CTCACAGAAGAACAGATTGGGAGAATCCTAACCCGCTGTCCTAACATAATGAGTTACAGT 1038 Query 1158 GTAGAAGACAAGCTCCGTCCAACTATGGAGTACTTTAGATCGCTAAATGTCGATGTTGCG 1217 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1039 GTCGAAGACAAGCTCCGTCCAACTATGGAGTACTTTAGATCGCTAAATGTCGATGTTGCG 1098 Query 1218 GTTCTCCTACATCGATGTCCCCAAACGTTTGGATTAAGCATAGAGTCGAATTTGAAGCCA 1277 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1099 GTTCTCCTACATCGATGTCCCCAAACGTTTGGATTAAGCATAGAGTCGAATTTGAAGCCT 1158 Query 1278 GTAACAGAGTTCTTCCTCGAAAAGGGTTTTGGTTTAGATGAAATTGGAATCATGATCTCT 1337 ||||||||||||||| | ||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 1159 GTAACAGAGTTCTTCTTGGAAAAAGGTTTTGGTTTAGATGAGATTGGGATCATGATCTCC 1218 Query 1338 AGATATGGAGCTTTGTACACATTCAGCTTGAAAGAGAATGTCATGCCGAAATGGGATTAC 1397 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 1219 AGATATGGAGCTTTGTACACTTTCAGCTTGAAAGAGAATCTCATGCCGAAATGGGATTAC 1278 Query 1398 TTTCAGACAATGGACTATCCAAAATCCGAGCTTGTGAAGTTCCCTCAGTTTTTTGGGTAC 1457 |||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||||||| Sbjct 1279 TTTCAGACAATGGATTATCCGCAATCCGAGCTCGTGAAGTTCCCGCAGTTTTTTGGGTAC 1338 Query 1458 AGTTTACAAGAGAGGATCAAGCCGAGATATGAGCTGGTTCAGAGAAGTGGAGTGAGACTG 1517 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1339 AGTTTACAAGAGAGGATCAAGCCGAGATACGAGCTGGTGAAGAGAAGTGGAGTGAGACTG 1398 Query 1518 CTGTTGAACCAGGTTTTATCGCTGTCGGGAATTGAGTTCGAGAAAGTTGTTAAGAAGAAG 1577 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1399 CTGTTGAACCAGGTTTTGTCGCTCTCGGGAATTGAGTTCGAGAAAGTTGTTAAGAAGAAG 1458 Query 1578 ATGATGAAACTTGTGTCTAATAACGTAATTGCTGAACAAAGTAGTGGTGGTTTGTTGTGA 1637 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1459 ATGATGAAACTTGTGTCTAATAACGTAATTGCTAAACAAAGTAGTGGTGGTTTGTTGTGA 1518 Query 1638 ATGTTTTAGTTTTAGAGTAAT 1658 ||||||||||||||||||||| Sbjct 1519 ATGTTTTAGTTTTAGAGTAAT 1539 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67076921445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5