BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14680.1
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493438 jgi|Araly1|493438|fgenesh2_kg.7__2871__AT4G14680.1 2322 0.0
Ahg479799 jgi|Araly1|479799|fgenesh2_kg.3__2500__AT3G22890.1 1184 0.0
Ahg494627 jgi|Araly1|494627|fgenesh2_kg.8__443__AT5G43780.1 671 0.0
Ahg333305 jgi|Araly1|333305|fgenesh1_pm.C_scaffold_375000001 422 5e-117
> Ahg493438 jgi|Araly1|493438|fgenesh2_kg.7__2871__AT4G14680.1
Length=1590
Score = 2322 bits (1257), Expect = 0.0
Identities = 1490/1599 (93%), Gaps = 30/1599 (2%)
Strand=Plus/Plus
Query 54 ttttttGTTTTCGATTCTCCTTCTTCAATGGCTTCCATGTCCACCGTCTTCCCCAAACCA 113
||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TTTTTGGCTTTCGATTCTCCTCCTTCAATGGCTTCCATGTCCACCGTCTTCCCCAAATCA 60
Query 114 ACCTCTTTCATCTCTCAACCTCT-AACAAAATCTCACAAATCCGATTCCGTAACCACATC 172
||||||||| ||||||||||||| | ||||| | ||||||||| ||||| ||||||||||
Sbjct 61 ACCTCTTTCCTCTCTCAACCTCTCACCAAAA-CCCACAAATCCAATTCCATAACCACATC 119
Query 173 CATTTCATTCCCTTCGAATTCGA-AAACTCGTAGCTTAAGAACCATCTC-TGTACGAGCT 230
|||||||||||||||| |||| | |||| |||| | ||| |||| || | ||||||||||
Sbjct 120 CATTTCATTCCCTTCGTATTCAAGAAAC-CGTAACCTAACAACCCTC-CGTGTACGAGCT 177
Query 231 GGCTTAATCGAGCCAGATGGTGGGAAACTTGTGGATCTTGTTGTACCGGAACCGA-GACG 289
|||||||||||||||||||||||||||||||| |||||||||||| |||| || | ||||
Sbjct 178 GGCTTAATCGAGCCAGATGGTGGGAAACTTGTAGATCTTGTTGTATCGGAGCC-ACGACG 236
Query 290 GCGAGAGAAGAAACACGAAGCGGCGGATTTGCCGAGAGTGAGATTGACGGCGATTGATTT 349
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 237 GCGAGAGAAGAAACACGAAGCGGCGGATTTGCCGAAAGTGAGATTGACGGCGATTGATTT 296
Query 350 GCAATGGATGCATGTGTTGAGTGAAGGTTGGGCTAGTCCTCTTCGTGGGTTTATGAGGGA 409
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 GCAATGGATGCATGTATTGAGTGAAGGTTGGGCTAGTCCTCTTCGAGGGTTTATGAGGGA 356
Query 410 ATCTGAGTTCCTCCAAACTCTTCATTTCAATTTGTTGAATCTCGATGATGGGTCTGTTGT 469
|||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||
Sbjct 357 ATCTGAGTTCCTCCAAACTCTTCATTTCAATTTGCTCAATCTTGATGATGGATCTGTTGT 416
Query 470 TAATATGTCTGTGCCTATTGTTCTTGCGATTGATGATCAACAAAAAGCCCTAATCGGTGA 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 TAATATGTCTGTGCCTATTGTTCTTGCGATTGATGATCAACAAAAAGCCCTAATTGGTGA 476
Query 530 ATCTAAACGTGTCTCCCTTGTTGATTCTGATGATAATCCAATCGCTATTCTCAATGATAT 589
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATCGAAACGTGTCTCTCTTGTTGATTCTGATGATAATCCAATCGCTATTCTCAATGATAT 536
Query 590 TGAGATTTATAAACATCCGAAAGAAGAGCGAATAGCGAGAACTTGGGGTACGACTGCACC 649
|||||||||||||||||||||||| || || || ||||||||||||||||||||||||||
Sbjct 537 TGAGATTTATAAACATCCGAAAGAGGAACGGATTGCGAGAACTTGGGGTACGACTGCACC 596
Query 650 GGGTTTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAGACTGGCTCATTGGGGGTGA 709
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 597 GGGTTTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAAACTGGCTCATTGGTGGTGA 656
Query 710 TCTTGAGGTTTTGGAACCTGTTAAGTACAATGATGGGCTTGATCGTTTCAGGCTTTCCCC 769
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 TCTTGAGGTTTTAGAACCTGTTAAGTACAATGATGGGCTTGATCGTTTCAGGCTTTCGCC 716
Query 770 GTTTGAACTGCGTAAGGAGCTAGAGAAACGTGGTGCGGATGCGGTCTTTGCGTTTCAGCT 829
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 717 GTTTGAACTGCGTAAGGAGCTAGAGAAGCGTGGCGCGGATGCTGTCTTTGCGTTCCAGCT 776
Query 830 TAGGAACCCAGTTCATAATGGACATGCTCTTCTTATGACTGATACTCGTAGGAGACTTCT 889
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TAGGAACCCGGTTCATAATGGACATGCTCTTCTTATGACTGATACTCGTAGGAGACTTCT 836
Query 890 TGAGATGGGTTATAAAAACCCTATCCTTTTGCTTCATCCATTGGGAGGGTTTACAAAAGC 949
||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 837 TGAGATGGGTTATCAAAACCCAATCCTTTTGCTTCATCCATTGGGAGGGTTTACGAAAGC 896
Query 950 TGATGATGTTCCTCTAAGCTGGCGAATGAAACAGCACGAGAAGGT------GCTAGAGGA 1003
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 897 GGATGATGTTCCTTTAAGCTGGCGAATGAAACAGCACGAGAAGGTAATAATGCTAGAGGA 956
Query 1004 TGGTGTTCTTGATCCAGAGACTACTGTGGTTTCCATATTCCCATCTCCAATGCTCTATGC 1063
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 957 CGGTGTTCTTGATCCAGAGACGACTGTGGTTTCTATATTCCCATCTCCAATGCTCTATGC 1016
Query 1064 TGGTCCAACCGAAGTCCAATGGCACGCAAAGGCTAGGATCAATGCTGGTGCTAACTTCTA 1123
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGGATCAATGCTGGTGCTAACTTCTA 1076
Query 1124 CATTGTCGGTAGGGATCCGGCTGGAATGGGTCATCCCGTGGAGAAACGTGATCTGTACGA 1183
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1077 CATTGTGGGTAGGGATCCAGCTGGAATGGGTCATCCTGTGGAGAAACGTGATCTGTATGA 1136
Query 1184 TGCTGATCACGGGAAGAAAGTTCTAAGCATGGCTCCTGGACTCGAACGACTCAACATTCT 1243
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1137 TGCTGATCACGGGAAGAAAGTACTTAGCATGGCTCCTGGACTCGAACGACTCAACATTCT 1196
Query 1244 TCCTTTCAGGGTTGCTGCGTACGATAAGACACAAGGAAAGATGGCTTTCTTTGATCCCTC 1303
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1197 TCCTTTCAGGGTTGCTGCTTACGATAAGACACAAGGCAAGATGGCTTTCTTTGATCCCAC 1256
Query 1304 AAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAGATGAGAGCATTGGCAAAGAACAG 1363
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TAGGGCACAGGATTTCTTGTTCATTTCTGGCACTAAGATGAGAGCATTGGCAAAGAACAG 1316
Query 1364 AGAGAACCCACCAGATGGATTTATGTGCCCTGGAGGCTGGAAAGTCCTTGTGGATTACTA 1423
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1317 AGAGAACCCTCCAGATGGATTTATGTGCCCTGGAGGCTGGAAGGTGCTTGTGGATTACTA 1376
Query 1424 CGACAGTTTGACACTAACCGGAAACACCAAACTTCCGGAAAAGATTCCGGTTTAAGACCG 1483
|||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1377 CGACAGTTTGACTGTAACCGGAAACACCAAACTCCCCGAAAAGATTCCGGTTTAAGACCG 1436
Query 1484 ATAAAACCATTTATTTGTTTTTGTTT--------CTCAACATAATGATT-ATTCCTTCTT 1534
||||| ||||||||||||||| |||| ||||||||||||||| || || ||||
Sbjct 1437 ATAAACCCATTTATTTGTTTTCGTTTTTTAAGAACTCAACATAATGATTGAT-CCATCTT 1495
Query 1535 GTTGTAAGATTTAGAAAGCT-ATATGAACAAAAGTAACACAAATCTTACATACATATAAA 1593
||||||||||| ||||||| ||||||||||| |||| |||||||||||||| || ||
Sbjct 1496 ATTGTAAGATTTGGAAAGCTTATATGAACAAAGGTAAAACAAATCTTACATA--TA-AA- 1551
Query 1594 CTaaaa-aaaaaaaCCAGAATGAATCTAACTTTTAATCC 1631
|||||| ||||||| |||||||||||||||||| |||||
Sbjct 1552 CTAAAATAAAAAAAGCAGAATGAATCTAACTTTCAATCC 1590
> Ahg479799 jgi|Araly1|479799|fgenesh2_kg.3__2500__AT3G22890.1
Length=1596
Score = 1184 bits (641), Expect = 0.0
Identities = 1037/1227 (85%), Gaps = 32/1227 (3%)
Strand=Plus/Plus
Query 225 CGAGCTGGCTTAATCGAGCCAGATGGTGGGAAACTTGTGGATCTTGTTGTACCGGAACCG 284
||||| |||||||||| ||| || ||||| || ||||| || || | || || ||
Sbjct 259 CGAGCCGGCTTAATCGCGCCTGACGGTGGTAAGCTTGTAGAGCTCATCGTGGAAGAGCC- 317
Query 285 AGA-CGGCGAGAGAAGAAACACGAAGCGGCGGATTTGCCGA-GAG-TGAGATTGACGGCG 341
| | || || |||||||||||||| |||||||| |||| | | | |||| ||||| ||
Sbjct 318 AAAGCGACGGGAGAAGAAACACGAGGCGGCGGAGCTGCC-ACGTGTTGAG-CTGACGACG 375
Query 342 ATTGATTTGCAATGGATGCATGTGTTGAGTGAAGGTTGGGCTAGTCCTCTTCGTG-GGTT 400
||||| ||||||||||||||||| || || ||||| ||||| ||||| | ||| | ||||
Sbjct 376 ATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCAAGTCCAC-TCG-GAGGTT 433
Query 401 T-ATGAGGGAATCTGAGTTCCTCCAAACTCTTCATTTCAATTTGTTGA-ATCTCGATGAT 458
| ||||| ||||| ||||||||||||||||||||||| || | | | ||| || ||
Sbjct 434 TCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCACT-ACGTCTTGACGAC 492
Query 459 GGGTCTGTTGTTAATATGTCTGTGCCTATTGTTCTTGCGATTGATGATCAACAAAAAGC- 517
|| || || ||||||||||| |||||||||||||| || ||||| ||| | ||||||||
Sbjct 493 GGCTCCGTCGTTAATATGTCGGTGCCTATTGTTCTCGCTATTGACGATGAGCAAAAAGCA 552
Query 518 CCTAATCGGTGAATCTAAACGTGTCTCCCTTGTTGATTCTGATGATAATCCAATCGCTAT 577
| | ||||| || |||||||||||| | ||| ||||||| |||| |||||| |||||||
Sbjct 553 CGT-ATCGGCGAGTCTAAACGTGTCGCTCTTTTTGATTCCGATGGTAATCCCGTCGCTAT 611
Query 578 TCTCAATGATATTGAGATTTATAAACATCCGAAA-GAAGAGCGAATAGCGAGAACTTGGG 636
|||| || |||||||||||||| ||||| ||| ||||| | ||||| ||||| ||||
Sbjct 612 CCTCAGCGACATTGAGATTTATAAGCATCC-AAAGGAAGAAAGGATAGCTAGAACATGGG 670
Query 637 GTACGACTGCACCGGGTTTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAGACTGGC 696
||||||| || || ||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 671 GTACGACGGCTCCAGGTTTGCCTTATGTAGATGAGGCGATAACTAATGCTGGAAACTGGC 730
Query 697 TCATTGGGGGTGATCTTGAGGTT-TTGGAACCTGTTAAGTACAATGATGGGCTTGATCGT 755
| ||||||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 731 TTATTGGGGGTGATCTTGAGGTTCTT-GAGCCAGTTAAGTACAATGATGGGCTTGATCGT 789
Query 756 TTCAGGCTTTC-CCCGTTTGAACTGCGTAAGGAGCTAGAGAAACGTGGTGCGGATGCGGT 814
||||| ||||| || | ||| || ||||| ||| | ||||| ||| ||||||||| ||
Sbjct 790 TTCAGACTTTCGCCTG-CTGAGCTACGTAAAGAGTTGGAGAAGCGTAATGCGGATGCTGT 848
Query 815 CTTTGCGTTT-CAGCTTAGGAACCCAGTTCATAATGGACATGCTCTTCTTATGACTGATA 873
||||| ||| ||||| ||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 849 GTTTGC-TTTCCAGCTGAGGAATCCGGTTCACAATGGTCATGCTCTTCTTATGACTGATA 907
Query 874 CTCGTAGGAGACTTCTTGAGATGGGTTATAAAAACCCTATCCTTTTGCTTCATCCATTGG 933
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 908 CTCGTAGGAGACTTCTTGAGATGGGATATAAAAACCCTATCCTTTTGCTTCATCCGTTAG 967
Query 934 GAGGGTTTACAAAAGCTGATGATGTTCCTCTAAG-CTGGCGAATGAAACAGCACGAGAAG 992
||||||| ||||| ||||||||||||||||| || |||| | ||||| || |||||||||
Sbjct 968 GAGGGTTCACAAAGGCTGATGATGTTCCTCT-AGACTGGAGGATGAAGCAACACGAGAAG 1026
Query 993 GTGCTAGAGGATGGTGTTCTTGATCCAGAGACTACTGTGGTTTCCATATTCCCATCTCCA 1052
||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1027 GTGCTAGAGGATGGTGTTCTTGATCCAGAGACTACAGTGGTTTCGATATTCCCGTCTCCT 1086
Query 1053 ATGC-TCTATGCTGGTCCAACCGAAGTCCAATGGCACGCAAAGGCTAGGATCAATGCTGG 1111
|||| | || ||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1087 ATGCAT-TACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATCAATGCTGG 1145
Query 1112 TGCTAACTTCTACATTGTCGGTAGGGATCCGGCTGGAATGGGTCATCCCGTGGAGAAACG 1171
||||||||| |||||||| ||| | ||||| || || ||||||||||| || || |||||
Sbjct 1146 TGCTAACTTTTACATTGTGGGTCGTGATCCAGCCGGGATGGGTCATCCAGTAGAAAAACG 1205
Query 1172 TGATCTGTACGATGCTGATCACGGGAAGAAAGTTCTAAGCATGGCTCCTGGACTCGAACG 1231
|||||| |||||||||||||| || |||||||| ||||||||||| || |||||||||||
Sbjct 1206 TGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGACTCGAACG 1265
Query 1232 ACTCAACATTCTTCCTTTCAGGGTTGCTGCGTACGATAAGACACAAGGAAAGATGGCTTT 1291
||||||||| ||||| |||||||||||||| || || ||||||||||| |||||||||||
Sbjct 1266 ACTCAACATCCTTCCATTCAGGGTTGCTGCATATGACAAGACACAAGGCAAGATGGCTTT 1325
Query 1292 CTTTGATCCCTCAAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAGATGAG-AGCAT 1350
||| |||||||| ||| |||| || ||||||||||| || |||||||||||| | | |||
Sbjct 1326 CTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATGCGCA-CAT 1384
Query 1351 TGGCAAAGAACAGA-GAGAACCCACCAGATGGATTT-ATGTGCCCTGGAGGCTGGAAAGT 1408
|||||||||||| | || ||||| || || || ||| |||||||| || || ||||||||
Sbjct 1385 TGGCAAAGAACA-ACGAAAACCCTCCTGACGG-TTTCATGTGCCCAGGTGGATGGAAAGT 1442
Query 1409 CCTTGTGGATTACTACGACAGTTTGAC 1435
|| ||||||||||| || || |||||
Sbjct 1443 TCTGGTGGATTACTATGAGAGCTTGAC 1469
> Ahg494627 jgi|Araly1|494627|fgenesh2_kg.8__443__AT5G43780.1
Length=1621
Score = 671 bits (363), Expect = 0.0
Identities = 860/1096 (78%), Gaps = 50/1096 (5%)
Strand=Plus/Plus
Query 360 CATGTGTTGAGTGAAGGTTGGGCTAGTCCTCTTCGTGGGTTT-ATGAGGGAATCTGAGTT 418
|||||| | || ||||| ||||| ||||||| || ||||| ||||| | || |||||
Sbjct 340 CATGTGCTAAGCGAAGGCTGGGCAAGTCCTC-TCAAAGGTTTCATGAGACAGTCAGAGTT 398
Query 419 CCTCCAAACTCTTCATTTCAATTTGTTGAATCTCGATGATGGGTCTGTTGTTAATATGTC 478
||||||||| |||||||| || | ||| || || || || || || || || |||||
Sbjct 399 CCTCCAAACACTTCATTTTAACTCGTTCCGGCTTGAAGACGGCTCCGTCGTCAACATGTC 458
Query 479 TGTGCCTATTGTTCTTGCGATTGATGATC-AACAAAAAG--CCCTAATCGGTGAATCTAA 535
|| || || || || || || || || | | | | ||| | | ||||| || || ||
Sbjct 459 GGTTCCGATCGTCCTCGCTATCGACGA-CGATC-AGAAGTTTCGT-ATCGGAGATTCCAA 515
Query 536 ACGTGTCTCCCTTGTTGATTCTGATGATAATCCAATCGCTATTCTCAATGATATTGAGAT 595
|| ||| | || ||||| || | || |||||| ||||| ||||| || |||||||||||
Sbjct 516 CCGAGTCACGCTCGTTGACTCGGTTGGTAATCCGATCGCGATTCTTAACGATATTGAGAT 575
Query 596 TTATAAACATCCGAAAGAAGAGCGAATAGCGAGAACTTGGGGTACGACTGCACCG-GG-T 653
||| || |||||||||||||||||||| |||||||| ||||| || || || || ||
Sbjct 576 TTACAAGCATCCGAAAGAAGAGCGAATCGCGAGAACATGGGGAACCACGGC-TCGTGGAC 634
Query 654 TTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAGACTGGCTCATTGGGGGTGATCTT 713
|| ||||||| ||||| || || ||||| |||||| ||||| | ||||| |||||| ||
Sbjct 635 TT-CCTTATGCGGAAGAAGCAATCACCAAAGCTGGAAACTGGTTGATTGGAGGTGAT-TT 692
Query 714 G-AGGTTTTGGAACCTG-TTAAGTACAATGATGGGCTT-GATC-GTTTCAGGCTT-TCCC 768
| | || |||| || | | |||||||||||| || || |||| ||||| | || || |
Sbjct 693 GCAAGTCCTGGAGCC-GATCAAGTACAATGAT-GGTTTAGATCGGTTTC--GTTTATCTC 748
Query 769 CGTTTGAACTGCGTAAGGAGCTAGAGAA-ACGTGGTGCGGATGCGGTCTTTGCGTTT-CA 826
| | | | ||||| ||||| | | || || |||||||| ||||| ||||| ||| ||
Sbjct 749 CATCTCAGCTGCGGGAGGAG-TTTATAAGGCGCGGTGCGGACGCGGTTTTTGC-TTTCCA 806
Query 827 GCTT-AGGAACCCAGTTCATAATGGACATGCTCTTCTTATGACTGATACTCGTAGGAGAC 885
| || |||||||| ||||| ||||| ||||| ||||||||||||||||||||||| || |
Sbjct 807 G-TTAAGGAACCCGGTTCACAATGGTCATGCGCTTCTTATGACTGATACTCGTAGAAGGC 865
Query 886 TTCTTGAGATGGGTTATAAAAACCCTATCCTT-TTGCTT-CATCCA-TTGGGAGGGTTTA 942
|||||||||||||||| ||||||||| | ||| ||| || ||||| || || || || |
Sbjct 866 TTCTTGAGATGGGTTACAAAAACCCTGT-CTTGTTG-TTGAATCCACTT-GGTGGATTCA 922
Query 943 CAAAAGCTGATGATGTTCCTCTAAGCTGGCGAATGAAACAGCACGAGAAGGTGCTAGAGG 1002
| || ||||||||||| ||||| |||||||| |||| || |||||||||||| | ||||
Sbjct 923 CTAAGGCTGATGATGTACCTCTCAGCTGGCGTATGAGGCAACACGAGAAGGTGTTGGAGG 982
Query 1003 ATGGTGTTCTTGATCCAGAGACTACTGTGGTTTCCATATTCCCATCTCCAATGCTCTATG 1062
||||||| || ||||| ||||| ||||| || ||||| ||||||||||||||||||||||
Sbjct 983 ATGGTGTACTGGATCCTGAGACCACTGTAGTGTCCATCTTCCCATCTCCAATGCTCTATG 1042
Query 1063 CTGGTCCAACCGAAGTCCAATGGCACGC-AAAGGCTAGGATCAATGCTGGTGCTAACTTC 1121
||||||| || || || || ||||| || |||| |||||||||| || || ||||| |||
Sbjct 1043 CTGGTCCGACTGAGGTTCAGTGGCATGCCAAAG-CTAGGATCAACGCGGGAGCTAATTTC 1101
Query 1122 TACATTGTCGGTAGGGATCCGGCTGGAATGGGTCATCCCGTG-GAGAA-ACGTGATCTGT 1179
|||||||| ||| | ||||| ||||| ||||| ||||| | ||||| | | ||||| |
Sbjct 1102 TACATTGTTGGTCGCGATCCAGCTGGTATGGGCCATCC-GACAGAGAAGA-GAGATCTCT 1159
Query 1180 ACGATGCTGATCACGGGAAGAAAGTTCTAAGCATGGCTCCTGGACTCGAACGACTCAACA 1239
| ||||| |||||||| |||||||| || |||||||| || ||||||||||| |||||||
Sbjct 1160 ATGATGCCGATCACGGCAAGAAAGTGCTTAGCATGGCCCCAGGACTCGAACGTCTCAACA 1219
Query 1240 TTCTTCCTTTCAGGGTTGCTGCGTACGATAAGACACAAGG-AAAGATGGCTTTCTTTGAT 1298
||||||| |||| ||| ||||| || ||||| || || || ||| ||||||||||| |||
Sbjct 1220 TTCTTCCCTTCAAGGTCGCTGCATATGATAAAACCCAGGGGAAA-ATGGCTTTCTTCGAT 1278
Query 1299 CCCTCAAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAGATGAGAG-CATTGGCAAA 1357
|| || ||| |||| |||||| | ||||| || || || |||||| | | | ||||| ||
Sbjct 1279 CCTTCTAGGTCTCAAGACTTCCTCTTCATATCAGGAACCAAGATGCGTGGC-TTGGCGAA 1337
Query 1358 GAACAGAGAGAACCCACCAGATGGATTT-ATGTG-CCCTGGAGGCTGGAAAGTCCTTG-T 1414
||| | |||||| ||||||||||| ||| ||||| |||| || ||||| || ||| |
Sbjct 1338 GAAGAAAGAGAATCCACCAGATGG-TTTCATGTGTCCCTCT-GGTTGGAAGGTG-TTGGT 1394
Query 1415 GGATTACTACGACAGT 1430
|||||||| ||||||
Sbjct 1395 TGATTACTATGACAGT 1410
> Ahg333305 jgi|Araly1|333305|fgenesh1_pm.C_scaffold_375000001
Length=267
Score = 422 bits (228), Expect = 5e-117
Identities = 254/267 (95%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 1212 ATGGCTCCTGGACTCGAACGACTCAACATTCTTCCTTTCAGGGTTGCTGCGTACGATAAG 1271
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCTCCTGGACTCGAACGACTCAACATTCTTCCTTTCAGGGTTGCTGCTTACGATAAG 60
Query 1272 ACACAAGGAAAGATGGCTTTCTTTGATCCCTCAAGGGCTCAGGACTTCTTGTTCATTTCT 1331
|||||||| ||||||||||||||||||||| | ||||| ||||| |||||||||||||||
Sbjct 61 ACACAAGGCAAGATGGCTTTCTTTGATCCCACTAGGGCACAGGATTTCTTGTTCATTTCT 120
Query 1332 GGCACTAAGATGAGAGCATTGGCAAAGAACAGAGAGAACCCACCAGATGGATTTATGTGC 1391
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GGCACTAAGATGAGAGCATTGGCAAAGAACAGAGAGAACCCTCCAGATGGATTTATGTGC 180
Query 1392 CCTGGAGGCTGGAAAGTCCTTGTGGATTACTACGACAGTTTGACACTAACCGGAAACACC 1451
|||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 CCTGGAGGCTGGAAGGTGCTTGTGGATTACTACGACAGTTTGACTGTAACCGGAAACACC 240
Query 1452 AAACTTCCGGAAAAGATTCCGGTTTAA 1478
||||| || ||||||||||||||||||
Sbjct 241 AAACTCCCCGAAAAGATTCCGGTTTAA 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61211023715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5