BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14690.1
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330043 jgi|Araly1|330043|fgenesh1_pm.C_scaffold_7002270 915 0.0
> Ahg330043 jgi|Araly1|330043|fgenesh1_pm.C_scaffold_7002270
Length=954
Score = 915 bits (495), Expect = 0.0
Identities = 551/578 (95%), Gaps = 3/578 (1%)
Strand=Plus/Plus
Query 91 ATGGCAACGGCGTCGTTTAACATGCAGTCAGTGTTCGCTGCTCCTTCCGGTGTATTG-AC 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGCAACGGCGTCGTTTAACATGCAGTCAGTGTTCGCTGCTCCTTCCGGTGTATTGAAA 60
Query 150 T-A-CACGCAACATCAGAAACACAAACCAACTCTTCTTCAAGAGGATTGCTCCGGTAGGA 207
| | |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 61 TCATCACGTAACATCAGAAACACAAACCAACTCTTCTTCAAGAGGAATGCTCCGGTGGGA 120
Query 208 GTCAGATGCATGGCTCAGGGCGATCCTATCAAGGAAGATCCTTCTGTGCCCTCGACCTCG 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCAGATGCATGGCTCAGGGCGATCCTATCAAGGAAGATCCTTCTGTGCCCTCGACCTCG 180
Query 268 ACTTCGGCCACTCCACCACAAATGCCACAGTCTCCTCCTCCACCAGTTAGCAAGCCTAAG 327
||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 ACTTCGGCCGCTCCGCCGCAAATGCCACCGTCTCCTCCTCCACCAGTTAGCAAGCCTAAG 240
Query 328 GTGAGTACGAAGTTTGGAGATTTGCTAGCGTTTAGCGGTCCAGCACCCGAGAGGATCAAC 387
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 241 GTGAGTACGAAGTTTGGAGATTTACTAGCATTTAGCGGTCCAGCACCTGAGAGGATCAAC 300
Query 388 GGGAGACTAGCAATGGTTGGATTCGTGGCGGCCATCGCCATGGAGTTATCAAAGGGAGAA 447
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 301 GGGAGACTAGCAATGGTTGGATTCGTGGCGGCCATCGCCGTGGAGTTGTCAAAGGGAGAA 360
Query 448 AACGTGTTTGCTCAGATCTCTGACGGTGGTGTCGGGTGGTTTCTAGGAACAACAGCGTTG 507
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 361 AACGTGTTTGCTCAGATCTCTGACGGTGGCGTTGGGTGGTTTCTTGGAACAACAGCGTTG 420
Query 508 TTGACGTTGGCATCGATGGTTCCGTTGTTCAAGGGAATAAGGGCAGAGGCAAAGTCAAAA 567
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 421 CTGACGTTGGCATCGATGGTTCCGTTGTTCAAGGGAATAAGAGCAGAGTCAAAGTCAAAA 480
Query 568 GGGTTCATGACTTCAGACGCCGAGCTATGGAACGGTCGGTTTGCGATGCTCGGTCTCGTT 627
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 481 GGGTTCATGACCTCAGACGCCGAGCTATGGAACGGTCGGTTCGCTATGCTTGGTCTCGTT 540
Query 628 GCGTTGGCCTTCACCGAGTACGTCACTGGTGGGACTCT 665
|||||||||||||| |||||||||||||||||||||||
Sbjct 541 GCGTTGGCCTTCACTGAGTACGTCACTGGTGGGACTCT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29773998177
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5