BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14790.1 Length=2359 Score E Sequences producing significant alignments: (Bits) Value Ahg890839 jgi|Araly1|890839|Al_scaffold_0007_2825 2750 0.0 > Ahg890839 jgi|Araly1|890839|Al_scaffold_0007_2825 Length=1710 Score = 2750 bits (1489), Expect = 0.0 Identities = 1637/1710 (96%), Gaps = 4/1710 (0%) Strand=Plus/Plus Query 324 ATGGCGTATTCTGTTGTTCGGCTTCGAAAGGTTTCAGCTTTGGGGATTTCTCGTGTTCTT 383 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGTATTCTGTTCTTCGGCTTCGAAAGGTTTCAGCTTTGGGGATTTCTCGTGTTCTT 60 Query 384 CAAGCTGATAAAGGAAGTTTGTGGCGGTTTCACTTTGAACCTGAGTTTGGTGACCTTTTG 443 ||||||||| | |||||||||||||||||| ||| ||||||||||||||||| ||||| Sbjct 61 CAAGCTGATCAGGGAAGTTTGTGGCGGTTTTACTCCGAACCTGAGTTTGGTGAGTTTTTG 120 Query 444 AGATTAGGTGTCTTGACTAGGAATTATAGAAAGAACTCTGGATCTCCAAAGTTTGATTTC 503 ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 121 AGATTAGGTGTCTTGACTAGGAACTACAGAAAGAACTCAGGATCTCCAAAGTTTGATTTC 180 Query 504 ACTGGCACTGGAACCACCTCAAAGTTCGATTTCACTGATCTCACCTGTCCTCATACATGG 563 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ACTGGCACGGGAACTACCTCAAAGTTCGATTTCACTGATCTCACCTGTCCTCATACATGG 240 Query 564 TATCCTATAGCTCGGAAGAAGAAGCGTAAGGTCATTCTACATGTTGGCCCGACAAACAGC 623 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 TATCCAATAGCTCGGAAGAAGAAGCGTAAGGTTATTCTACATGTTGGCCCGACAAACAGT 300 Query 624 GGGAAGACATATAGTGCCCTTAAGCACCTTGAACAGAGTTCTTCAGGTGTATATTGTGGT 683 ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| Sbjct 301 GGGAAGACATATAGTGCTCTTAAGCACCTTGAGCAGAGTTCTTCAGGCGTATATTGTGGT 360 Query 684 CCGTTAAGATTGTTGGCATGGGAGGTAGCTAAACGGTTAAACAAAGCAAATGTTCCATGT 743 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CCGTTAAGATTGTTGGCATGGGAGGTAGCTAAACGGTTAAACAAAGCAAATGTTCCATGT 420 Query 744 GATTTGATCACGGGACAAGAGAAAGACTTAGTGGAAGGGGCAACACACAAAGCTGTGACA 803 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GATTTGATCACGGGACAAGAGAAAGACTTAGTGGAAGGGGCAACACACAAAGCTGTGACA 480 Query 804 GTTGAAATGGCTGATGTTACATCTGTCTACGATTGTGCCATCATTGACGAAATTCAGATG 863 |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 481 GTTGAAATGGCTGATGTTACGTCGGTCTATGATTGTGCCATCATTGACGAAATTCAGATG 540 Query 864 GTGGGATGTAAACAAAGGGGATTTGCATTTACTCGTGCTTTACTTGGAATCGCGGCTGAT 923 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 541 GTGGGATGTACACAAAGGGGATTTGCATTTACTCGTGCTCTACTTGGAATCGCGGCTGAT 600 Query 924 GAGCTACATTTATGTGGCGATCCAGCTGTCGTACCTCTTGTTGAAGATATACTGAAAGTA 983 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 601 GAGCTACATCTATGTGGCGATCCTGCTGTCGTACCTCTTGTTGAAGATATACTGAAAGTA 660 Query 984 ACTGGAGATGATGTCGAGGTTC-ATACCTATGAGAGGCTTTCACCATTAGTCCCTTTGAA 1042 |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| Sbjct 661 ACTGGAGATGATGTCGAGGTTCGA-ACATATGAGAGGCTTTCACCATTAGTCCCTTTGAA 719 Query 1043 GGTTCCTGTTTCATCAGTTTCCAGTATTAAAACTGGGGATTGTCTTGTCACTTTTTCCCG 1102 ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 720 GGTGCCTGTTTCATCAGTTTCCAGTATCAAAACTGGGGATTGTCTTGTCACCTTTTCCCG 779 Query 1103 AAAAGATATATATGCGTATAAGAAAACAATTGAACGTGCGGGGAAGCATCTTTGCTCTGT 1162 ||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| Sbjct 780 AAAAGATATATATGCATATAAGAAAATAATTGAACGTGCGGGGAATCATCTTTGCTCTGT 839 Query 1163 GGTTTATGGTTCGTTGCCTCCAGAGACTCGCACGGCACAGGCAACAAGGTTTAACGATGA 1222 |||||||||||| ||||||||||||||||| || |||||||||||||||||||| || || Sbjct 840 GGTTTATGGTTCATTGCCTCCAGAGACTCGGACAGCACAGGCAACAAGGTTTAATGACGA 899 Query 1223 GACCAATGACTTTGATGTGCTTGTTGCCAGCGATGCGATTGGCATGGGTCTTAATTTGAA 1282 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 900 GACCAATGACTTTGATGTGCTTGTTGCCAGCGATGCAATTGGCATGGGTCTTAATTTGAA 959 Query 1283 TATTTCAAGGATTATCTTCTCGACCCTTCAAAAATATGATGGTTCCGAGACCAGAGACCT 1342 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 960 TATTTCAAGGATTATCTTCTCGACCCTTCAAAAATTTGATGGTTCCGAGACCAGAGACCT 1019 Query 1343 AACAGTATCTGAGATTAAACAAATTGCAGGGAGAGCTGGCAGGTTTCAATCAAAGTTCCC 1402 |||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| Sbjct 1020 AACAGTATCTGAGATTAAACAAATTGCAGGGAGAGCTGGCAGATTCCGATCAAAGTTCCC 1079 Query 1403 TATTGGCGAAGTAACTTGTTTGCACAAAGAGGATCTTCCGTTGCTTCACTCTTCTCTCAA 1462 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1080 TATTGGCGAAGTAACTTGTTTGCACAAAGAGGATCTTCCGTTGCTCCACTCTTCTCTCAA 1139 Query 1463 GTCTCCATCACCTATTCTTGAGCGTGCTGGACTATTTCCAACATTTGACCTCCTATCTGG 1522 |||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1140 GTCTCCTTCACCTCTTCTTGAGCGTGCTGGACTATTTCCAACATTTGACCTCCTTTCTAG 1199 Query 1523 GTATTCCCAAGCACACCCTACACACGGGTTGTACCAGATATTGGAACATTTTGTTGAAAA 1582 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1200 GTATTCCCAAGCACACCCTAAACACGGGTTGTACCAGATATTGGAACATTTTGTTGAAAA 1259 Query 1583 TGCTAAGCTGTCTTCAAACTACTTCATCTCTAATGTTGAAGACATGATGAAAGTTGCTGC 1642 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1260 TGCTAAGCTGTCTTCAAACTATTTCATCTCAAATGTTGAAGACATGATGAAAGTTGCTGC 1319 Query 1643 CATTGTTGATGAATTACCCCTCGGATTGCAAGAGAAGTATCTTTTCGTGGTCAGTCCAGT 1702 ||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 1320 CATTGTTGATGAATTACCCCTCGGATTGCAAGAGAAGTACCTCTTCGTAGTCAGTCCAGT 1379 Query 1703 TGATGTAAATGACGAAATTTCAGGTCAGGGACTTGCACAGTTTGCTCAAAACTTCTCGAA 1762 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1380 TGATATAAATGACGAAATTTCAGGTCAGGGACTTGCACAGTTTGCTCACAACTTCTCGAA 1439 Query 1763 GGCAGGCATTGTGAGGCTCCGGGAGATACTTGCA-CCTGACAGAGTGAAGGTTCCCAAAA 1821 ||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct 1440 GGCAGGCGTTGTGAGGCTCCGGGAGATACTTGCAGCC-GACAGAGTTAAGGTTCCCAAAA 1498 Query 1822 CACCTACAGAACTCAAGGAACTTGAATCCATTCACAAGGTTTTGGATCTGTACGTATGGT 1881 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 CACCAACAGAACTAAAGGAACTTGAATCCATTCACAAGGTTTTGGATCTGTACGTATGGT 1558 Query 1882 TAAGCTTAAGGCTAGAGGATTCTTTTCCTGACCGCGAAGTAGCAGCTTCGCAAAAGTCAA 1941 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 TAAGCTTAAGGCTAGAGGATTCTTTTCCTGACCGCGAAGTAGCAGCTTCGCAAAAGTCAA 1618 Query 1942 TCTGCAATTTATTGATTGAGCAATTCTTAGAGGGAAATAGACTAAACTCTCCTGCCCGCT 2001 |||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||| Sbjct 1619 TCTGCAATATATTGATTGAGCAATTCTTGGAGGGAAATAGATTAAACTCTCCTACCCGCG 1678 Query 2002 TCTCACGATATCTAAGGCGGCAAAAACTCT 2031 |||||||||||||||| ||||||| ||| Sbjct 1679 TCTCACGATATCTAAGAAAGCAAAAATTCT 1708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88864541585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5