BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14880.1
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493405 jgi|Araly1|493405|fgenesh2_kg.7__2838__AT4G14880.2 1971 0.0
Ahg318977 jgi|Araly1|318977|fgenesh1_pm.C_scaffold_3001993 577 9e-164
> Ahg493405 jgi|Araly1|493405|fgenesh2_kg.7__2838__AT4G14880.2
Length=1203
Score = 1971 bits (1067), Expect = 0.0
Identities = 1159/1203 (96%), Gaps = 8/1203 (1%)
Strand=Plus/Plus
Query 92 TTTTCTTCAAAACGATTCGGGTCAAGGTTATTGACTTTCTCATT---CAGTGAAGCTTGA 148
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTTTCTTCAAAACGATTCGGGTCAAGGTTATTGACTTTCTCATTCAGCAGTGAAGCTTGA 60
Query 149 ATCATGGCCTCGAGAATTGCTAAAGATGTGACTGAATTGATTGGGAACACTCCATTGGTG 208
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCATGGCCTCTAGAATTGCTAAAGATGTGACTGAATTGATTGGGAACACTCCATTGGTG 120
Query 209 TATTTGAACAATGTTGCTGAAGGATGTGTTGGTCGTGTTGCTGCTAAGCTTGAGATGATG 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATTTGAACAATGTTGCTGAAGGATGTGTTGGTCGTGTTGCTGCTAAGCTTGAGATGATG 180
Query 269 GAACCGTGCTCTAGCGTCAAAGACAGGATTGGTTTTAGCATGATTTCTGATGCAGAAAAG 328
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GAACCATGCTCTAGCGTTAAAGACAGGATTGGTTTCAGCATGATTTCTGATGCAGAAAAG 240
Query 329 AAGGGTCTTATCAAACCAGGAGAGAGTGTGCTGATTGAGCCAACAAGTGGAAACACTGGA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGGGTCTTATCAAACCAGGAGAGAGTGTGCTGATTGAGCCAACAAGTGGAAACACTGGA 300
Query 389 GTTGGGTTAGCATTCACGGCAGCTGCCAAAGGCTACAAGCTTATTATTACAATGCCAGCT 448
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 301 GTTGGGTTAGCATTCACGGCGGCTGCCAAGGGCTACAAGCTTATTATTACCATGCCAGCT 360
Query 449 TCTATGAGTACTGAGAGAAGAATCATTCTCTTAGCTTTTGGAGTTGAGTTGGTTTTAACT 508
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCGATGAGTATTGAGAGAAGAATCATTCTCTTAGCTTTTGGAGTTGAGTTGGTTTTAACT 420
Query 509 GACCCAGCTAAGGGCATGAAAGGAGCTATCGCAAAGGCGGAAGAGATTTTGGCGAAAACA 568
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 421 GACCCAGCTAAGGGCATGAAAGGTGCTATCGCAAAGGCGGAAGAGATTTTGGCTAAAACG 480
Query 569 CCCAATGGTTACATGCTTCAGCAGTTTGAGAACCCTGCCAACCCTAAGATCCACTATGAG 628
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 481 CCCAATGGTTACATGCTCCAACAGTTTGAGAACCCTGCTAACCCTAAGATCCACTATGAG 540
Query 629 ACTACGGGACCTGAGATATGGAAAGGCACTGGTGGCAAAATCGATGGCTTTGTTTCTGGG 688
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 ACTACTGGACCTGAGATATGGAAAGGCACTGGTGGCAAAATTGATGGCTTTGTTTCTGGG 600
Query 689 ATTGGTACTGGTGGTACCATTACAGGTGCTGGGAAGTATCTTAAAGAACAGAACGCAAAC 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTGGTACTGGTGGTACCATTACAGGTGCTGGGAAGTATCTTAAAGAACAGAACGCAAAC 660
Query 749 GTCAAGCTGTATGGAGTGGAGCCAGTTGAAAGTGCTATTCTATCCGGTGGGAAGCCAGGT 808
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTAAAGCTGTATGGAGTGGAGCCAGTTGAAAGTGCTATTCTATCCGGTGGGAAGCCAGGC 720
Query 809 CCTCACAAGATTCAAGGGATAGGAGCTGGTTTTATACCAAGTGTATTGAATGTTGATCTT 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCTCACAAGATTCAAGGGATAGGAGCTGGTTTTATACCAAGTGTATTGAATGTTGATCTT 780
Query 869 ATTGACGAAGTTGTTCAGGTTTCAAGTGATGAATCCATTGACATGGCAAGGCAGCTTGCT 928
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATTGATGAAGTTGTTCAGGTTTCAAGTGATGAATCCATTGACATGGCAAGGCAGCTTGCT 840
Query 929 CTTAAAGAAGGTCTTCTTGTGGGAATATCATCCGGTGCAGCAGCTGCTGCAGCAATTAAA 988
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 841 CTTAAAGAAGGTCTTCTTGTGGGAATATCATCTGGTGCAGCAGCTGCTGCAGCAATCAAA 900
Query 989 CTTGCACAGAGGCCAGAAAACGCTGGGAAGCTATTTGTGGCGATATTCCCGAGTTTCGGG 1048
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 901 CTTGCACAGAGGCCAGAAAACGCCGGGAAGCTTTTTGTGGCGATATTCCCGAGTTTCGGG 960
Query 1049 GAGAGGTATCTATCAACGGTACTTTTCGATGCGACAAGGAAAGAAGCGGAAGCCATGACC 1108
|||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 961 GAGAGGTATCTATCGACTGTACTATTCGATGCGACAAGGAAAGAAGCGGAATCCATGACC 1020
Query 1109 TTCGAGGCTTGAA-CATTCTCCATTTCTTCTTAAGAGACGCCAAAATAAAAGAGATGTTC 1167
|| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1021 TTTGAGGCTTGAAACATTCTCCATTTCTTCTTAAGAGACGCCGAAATAAAAGAGATGTTT 1080
Query 1168 AGTTTCTCCTATAGAGACTCTTCATCTTTAGTTACATTGCGTCTTTGCTTCCATCTGTAT 1227
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1081 AGTTTCTCCTATAGAGACTCTTCATCTTTAGCTACATTGCGTCTTTGCTTCCATATGTAT 1140
Query 1228 CTTCT-CTT--GTGTGCCAATAAAAG-TCAAACTAGATTTTCTCTGTTTCTTTTGTGAAC 1283
||||| ||| |||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 1141 CTTCTTCTTTTGTGTGCCAATAAAAAATCAAACTAGATTTTCTCTATTTCGTTTGTGAAC 1200
Query 1284 CAC 1286
|||
Sbjct 1201 CAC 1203
> Ahg318977 jgi|Araly1|318977|fgenesh1_pm.C_scaffold_3001993
Length=918
Score = 577 bits (312), Expect = 9e-164
Identities = 436/496 (88%), Gaps = 8/496 (2%)
Strand=Plus/Plus
Query 163 AATTGCTAAAGATGTGACTGAATTGATTGGGAACACTCCATTGGTGTATTTGAACAATGT 222
||| ||||||||||| |||||||| || || ||||||||||| |||||| | ||||| ||
Sbjct 21 AATCGCTAAAGATGTTACTGAATTAATAGGTAACACTCCATTAGTGTATCTAAACAAAGT 80
Query 223 TGCTGAAGGA-TGTGTTGGTCGTGTTGCTGCTAAGCTTGAGATGATGGAACCGTGCTCTA 281
||| || || |||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 81 GGCT-AAAGATTGTGTTGGTCATGTTGCTGCTAAGCTTGAGATGATGGAACCATGCTCTA 139
Query 282 GCGTCAAAGACAGGATTGGTTTTAGCATGATTTCTGATGCAGAAAAGAAGGGTCTTATCA 341
||||||||||||||||||||| ||| |||||| ||||||||||| || |||||||| |
Sbjct 140 GCGTCAAAGACAGGATTGGTTATAGTATGATTGCTGATGCAGAAGCTAAAGGTCTTATTA 199
Query 342 AACCAGGAGAGAGTGTGCTGATTGAGCCAACAAGTGGAAACACTGGAGTTGGGTTAGCAT 401
||||||||||||||||| |||| |||||||||||||| || ||||||||||| |||||||
Sbjct 200 AACCAGGAGAGAGTGTGTTGATGGAGCCAACAAGTGGGAATACTGGAGTTGGTTTAGCAT 259
Query 402 TCACGGCAGCTGCCAAAGGCT-ACAAGCTTATTATTACAATGCCAGCTTCTATGAGTACT 460
| || |||||||| ||||| | | |||||| ||||||||||||||||||| |||||| |
Sbjct 260 TTACTGCAGCTGC-AAAGGGTTATAAGCTTGTTATTACAATGCCAGCTTCAATGAGTG-T 317
Query 461 -GAGAGAAGAATCATTCTCTTAGCTTTTGGAGTTGAGTTGGTT-TTAACTGACCCAGCTA 518
||||||||||||||||||||||||||||||| ||||||| || ||| |||| || ||||
Sbjct 318 AGAGAGAAGAATCATTCTCTTAGCTTTTGGAGCTGAGTTGATTCTTA-CTGATCCGGCTA 376
Query 519 AGGGCATGAAAGGAGCTATCGCAAAGGCGGAAGAGATTTTGGCGAAAACACCCAATGGTT 578
| || |||||||| ||| | ||||||||||| ||||||||||||||||| || || ||||
Sbjct 377 AAGGTATGAAAGGCGCTGTTGCAAAGGCGGAGGAGATTTTGGCGAAAACGCCTAACGGTT 436
Query 579 ACATGCTTCAGCAGTTTGAGAACCCTGCCAACCCTAAGATCCACTATGAGACTACGGGAC 638
| |||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||
Sbjct 437 ATATGCTTCAACAGTTTGAGAACCCTGCCAATCCAAAGATCCATTATGAGACTACAGGAC 496
Query 639 CTGAGATATGGAAAGG 654
||||||||||||||||
Sbjct 497 CTGAGATATGGAAAGG 512
Score = 396 bits (214), Expect = 3e-109
Identities = 345/408 (85%), Gaps = 10/408 (2%)
Strand=Plus/Plus
Query 712 AGGTGCTGGGAAGTATCTTAAAGAACAGAACGCAAACGTCAAGCTGTATGGAGTGGAGCC 771
|||||||||||||||||| || ||||||||| |||| | ||||||||||| || |||||
Sbjct 510 AGGTGCTGGGAAGTATCTCAAGGAACAGAACAAAAACATAAAGCTGTATGGTGTCGAGCC 569
Query 772 AGTTGAAAGTGCTATTCTATCCGGTGGGAAGCCAGGTCCTCACAAGATTCAAGGGATAGG 831
|||||||| ||||||| |||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 570 TGTTGAAAGCCCTATTCTTTCCGGTGGAAAGCCAGGTCCCCACAAAATTCAAGGTATAGG 629
Query 832 AGCTGGTTTTATACCAAGTGTATTGAATGTTGATCTTATTGACGAAGTTGTTCAGGTTTC 891
||||||||||| ||| | | ||| ||||||||||||| || |||||||||||||||||
Sbjct 630 TGCTGGTTTTATTCCAGGCATTTTGGATGTTGATCTTATAGATGAAGTTGTTCAGGTTTC 689
Query 892 AAGTGATGAATCCATTGACATGGCAAGGCAGCTTGCTCTTAAAGAAGGTCTTCTT-GTGG 950
||||||||||||||||||||||||||||| ||||| |||| ||||| || ||||
Sbjct 690 AAGTGATGAATCCATTGACATGGCAAGGCTTCTTGCAAAGGAAGAGGGTCTG-TTAGTGG 748
Query 951 GAATATCATCCGGTGCAGCAGCTGCTGCAGCAATTAAACTTGCACAGAGGCCAGAAAACG 1010
|||| ||||| || ||||||||||| |||||||| ||||||||| ||||||||||||| |
Sbjct 749 GAATCTCATCTGGAGCAGCAGCTGCCGCAGCAATCAAACTTGCAAAGAGGCCAGAAAATG 808
Query 1011 CTGGGAAGCT-ATTTGTGGCGATATTCCCGAGTTTCGGGGAGAGG-TATCTATCAACGGT 1068
|||||||||| || |||||| | ||||||||||| ||||| | | |||||||| || ||
Sbjct 809 CTGGGAAGCTTATA-GTGGCGGTGTTCCCGAGTTTTGGGGA-ACGATATCTATCGACTGT 866
Query 1069 ACTTTTCGATGC-GACAAGGAAAGAAGCGGAAGCC-ATGACCTTCGAG 1114
||| |||||||| | |||||||||| || || | | |||||||| |||
Sbjct 867 ACTGTTCGATGCAG-CAAGGAAAGAGGCAGA-GACTATGACCTTTGAG 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51237200448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5